Bayesian models for CNN using Pyro & Pytorch - deep-learning

I am applying a Bayesian model for a CNN that has many layers (more than 3), using Stochastic Variational Inference in Pyro Package.
However after defining the NN, Model and Guide functions and running the training loop I found that the loss stops decreasing on loss ~8000 (which is extremely high). I tried different learning rates and different optimization functions but non of them reaches a loss lower than 8000.
At last I changed the autoguide function (I tried AutoNormal, AutoGaussian, AutoBeta) they all stopped dicreasing the loss at the same point.
enter image description here
The last thing I did is trying the AutoMultivatiateNormal and for this it reached negative values (it reached -1) but when I looked at the weight matrices I found that they are all turned into scalers!!
The following graph represent the loss pattern for the AutoMultivatiateNormal
enter image description here
Do anyone knows how to solve such problem?? and why is this happening??

Related

PointNet can't predict segmentation on custom point cloud

I'm currently working on my bachelor project and I'm using the PointNet deep neural network.
My project group and I have created a dataset of point clouds(an unsorted list of x amount of 3d coordinates) and segmentation files, but we can't train PointNet to predict segmentation with the dataset.
Each segmentation file is a list containing the same amount of rows, as points in the corresponding point cloud, and each row is either a 1 or a 2, depending on the corresponding point belonging to segment 1 or 2.
When PointNet predicts it outputs a list of x elements, where each element is the segment that PointNet predicts the corresponding point belongs to.
When we run the benchmark dataset from the original PointNet implementation, the system runs and can predict segmentation, so we know that the error is in the dataset somewhere, even though we have tried our best to have our dataset look like the original benchmark dataset.
The implemented PointNet uses pytorch conv2d, maxpool2d and linear transformation. For calculating the loss, both the nn.functional.nll_loss and the nn.NLLLos functions have been used. When using the nn.NLLLos the weight parameter was set to a tensor of [1,100] to combat potential imbalance of the data.
These are the thing we have tried:
We have tried downsampling the point clouds i.e remove points using voxel downsampling
We have tried downscaling and normalize all values so they are between 0 and 1, using this formula (data - np.min(data)) / (np.max(data) - np.min(data))
We have tried running an euclidean clustering function on the data, to have each scanned object for it self
We have tried replicating another dataset, which was created using the same raw data, which we know have worked before
In the attached link, images of the datafiles with a description can be found.
Cheers everyone

Most wierd loss function shape (because of weight decay parameter)

I am training a large neural network model (1 module Hourglass) for a facial landmark recognition task. Database used for training is WFLW.
Loss function used is MSELoss() between the predicted output heatmaps, and the ground-truth heatmaps.
- Batch size = 32
- Adam Optimizer
- Learning rate = 0.0001
- Weight decay = 0.0001
As I am building a baseline model, I have launched a basic experiment with the parameters shown above. I previously had executed a model with the same exact parameters, but with weight-decay=0. The model converged successfully. Thus, the problem is with the weight-decay new value.
I was expecting to observe a smooth loss function that slowly decreased. As it can be observed in the image below, the loss function has a very very wierd shape.
This will probably be fixed by changing the weight decay parameter (decreasing it, maybe?).
I would highly appreciate if someone could provide a more in-depth explanation into the strange shape of this loss function, and its relation with the weight-decay parameter.
In addition, to explain why this premature convergence into a very specific value of 0.000415 with a very narrow standard deviation? Is it a strong local minimum?
Thanks in advance.
Loss should not consistently increase when using gradient descent. It does not matter if you use weight decay or not, there is either a bug in your code (e.g. worth checking what happens with normal gradient descent, not Adam, as there are ways in which one can wrongly implement weight decay with Adam), or your learning rate is too large.

Why filters are trained differently based on the same image in CNN Deep Learning?

I'm a beginner in CNN DeepLearning, I know the basic concept that we use some filters to generate a set of feature maps from an image, we activate it using non-linear method like 'relu' before we downsample it. We keep doing this until the image becomes very small. Then we flatten it and use a fully connected network to calculate its category. And we use the back-propergation technique to calculate all parameters in the map. One thing I don't understand is that when we do Conv2D we create many filters(channels) from an image. Like in the sample code:
model.add(layers.Conv2D(32, (3, 3), activation='relu', input_shape=(150, 150, 3)))
I understand this is to generate as many features as possible. But how these filters are trained to detect different features from one image? If all of them are initialized with the same value (like 0) then they should end up with detecting the same feature, right? Are we giving them random values during initialization so that they can find their local minimum loss using gradient descent?
If you initialize all filters with the same value, then you are right, they will learn the same thing. That's why we never initialize with same value. We initialize each kernel with random values (usually 0 mean and some small variance).
There are many methods to find out a good initialization for your network. One of the most famous and used ones is Xavier initialization.
Adding to what being discussed, the weights in the CONV layer also learns the same way weights learn in FC layer, through backpropagation, using some optimization algorithm (GD, Adam, RMSprop etc). Ending up in local optimum is very unlikely in big networks as a point being local optimum for all the weights is very unlikely as no of weights increases. If weights are initialized with zeros, the gradients become the same for the update and hidden units become the same in a layer. Hence they learn the same features. Hence we use random initialization with mean 0 and variance inversely proportional to the number of units in the previous layer. (eg Xavier)

Tensorflow Multiple Input Loss Function

I am trying to implement a CNN in Tensorflow (quite similar architecture to VGG), which then splits into two branches after the first fully connected layer. It follows this paper: https://arxiv.org/abs/1612.01697
Each of the two branches of the network outputs a set of 32 numbers. I want to write a joint loss function, which will take 3 inputs:
The predictions of branch 1 (y)
The predictions of branch 2 (alpha)
The labels Y (ground truth) (q)
and calculate a weighted loss, as in the image below:
Loss function definition
q_hat = tf.divide(tf.reduce_sum(tf.multiply(alpha, y),0), tf.reduce_sum(alpha,0))
loss = tf.abs(tf.subtract(q_hat, q))
I understand the fact that I need to use the tf functions in order to implement this loss function. Having implemented the above function, the network is training, but once trained, it is not outputting the expected results.
Has anyone ever tried combining outputs of two branches of a network in one joint loss function? Is this something TensorFlow supports? Maybe I am making a mistake somewhere here? Any help whatsoever would be greatly appreciated. Let me know if you would like me to add any further details.
From TensorFlow perspective, there is absolutely no difference between a "regular" CNN graph and a "branched" graph. For TensorFlow, it is just a graph that needs to be executed. So, TensorFlow certainly supports this. "Combining two branches into joint loss" is also nothing special. In fact, it is "good" that loss depends on both branches. It means that when you ask TensorFlow to compute loss, it will have to do the forward pass through both branches, which is what you want.
One thing I noticed is that your code for loss is different than the image. Your code appears to do this https://ibb.co/kbEH95

Hard to understand Caffe MNIST example

After going through the Caffe tutorial here: http://caffe.berkeleyvision.org/gathered/examples/mnist.html
I am really confused about the different (and efficient) model using in this tutorial, which is defined here: https://github.com/BVLC/caffe/blob/master/examples/mnist/lenet_train_test.prototxt
As I understand, Convolutional layer in Caffe simply calculate the sum of Wx+b for each input, without applying any activation function. If we would like to add the activation function, we should add another layer immediately below that convolutional layer, like Sigmoid, Tanh, or Relu layer. Any paper/tutorial I read on the internet applies the activation function to the neuron units.
It leaves me a big question mark as we only can see the Convolutional layers and Pooling layers interleaving in the model. I hope someone can give me an explanation.
As a site note, another doubt for me is the max_iter in this solver:
https://github.com/BVLC/caffe/blob/master/examples/mnist/lenet_solver.prototxt
We have 60.000 images for training, 10.000 images for testing. So why does the max_iter here only 10.000 (and it still can get > 99% accuracy rate)? What does Caffe do in each iteration?
Actually, I'm not so sure if the accuracy rate is the total correct prediction/test size.
I'm very amazed of this example, as I haven't found any example, framework that can achieve this high accuracy rate in that very short time (only 5 mins to get >99% accuracy rate). Hence, I doubt there should be something I misunderstood.
Thanks.
Caffe uses batch processing. The max_iter is 10,000 because the batch_size is 64. No of epochs = (batch_size x max_iter)/No of train samples. So the number of epochs is nearly 10. The accuracy is calculated on the test data. And yes, the accuracy of the model is indeed >99% as the dataset is not very complicated.
For your question about the missing activation layers, you are correct. The model in the tutorial is missing activation layers. This seems to be an oversight of the tutorial. For the real LeNet-5 model, there should be activation functions following the convolution layers. For MNIST, the model still works surprisingly well without the additional activation layers.
For reference, in Le Cun's 2001 paper, it states:
As in classical neural networks, units in layers up to F6 compute a dot product between their input vector and their weight vector, to which a bias is added. This weighted sum, denoted a_i, for unit i, is then passed through a sigmoid squashing function to produce the state of unit i ...
F6 is the "blob" between the two fully connected layers. Hence the first fully connected layers should have an activation function applied (the tutorial uses ReLU activation functions instead of sigmoid).
MNIST is the hello world example for neural networks. It is very simple to today's standard. A single fully connected layer can solve the problem with accuracy of about 92%. Lenet-5 is a big improvement over this example.