It seems that after knitting my rmarkdown file, only the figures are saved in my working directory. I cannot find any html file.
Running the file takes a long time and somehow Rstudio closes right before finishing the knit.
Could someone help solving this problem? Thanks
Trying to knit a Rmarkdown file, but it didn’t save. Only figures were saved
Related
Rmarkdown after knit the Flexdashboard .doc doesn't display the content in a tab, but it will display the output from .html generated file. I don't know what the issue is.
Here is a link to code on Pastebin and dataset on Easyupload
Thanks in advance for any tips.
.html generated file output
flexdashboard file
In RStudio, I set the knit option to current folder :
When I knit a Markdown document to HTML, this surprisingly happens in a temporary directory (for example : 'Temp\RtmpOa3xSM\preview-11e8c6644fdd.dir' directory).
As far as I can remember, this didn't happen previously : the knit would happen in the directory I selected in the options.
Option rstudio.markdownToHTML isn't set :
getOption('rstudio.markdownToHTML')
NULL
When I close the HTML preview, the HTML document disappears.
The only solution I found to keep the HTML document is to open the document in a Browser and to save it from there.
Bug or am I missing something?
Thanks for your help!
[EDIT] other Win 10 users reported to me the same problem
Under certain conditions, RStudio moves the knitted (HTML or PDF) file to a temporary directory (located under tempdir()). These conditions are:
You are in a RStudio Project.
The "Project build tools" are set to "Package".
The RMD file is located in a subdirectory vignettes.
Knitting is initiated with the "Knit" button in RStudio.
Typically, this happens when knitting a package vignette and has the purpose of "keep[ing] your vignettes folder from becoming cluttered with HTML files".
Changing the Project build tools, changing the folder name or closing the project prevents this behavior. Another way to keep the generated (HTML or PDF) file is to call rmarkdown::render interactively (although this is not exactly equivalent to the "Knit" button).
Note that this only affects where the generated file will be saved. The Working Directory while knitting is unaffected.
I am using GitHub pages for my website!. I add new pages as md files, which nicely works when there are no figure included.
However, when I did some analyses in RStudio (.Rmd file) the final md file does not display any figure or leaflet object when used with GitHub pages. When I include the html file directly everything works nicely except for the fact that it does not look like the rest of my site (which I want, of course). I have to mention that I use an adapted version of the beautiful-jekyll template! by Dean Attali!.
I was wondering why it is not working. Maybe it is due to an issue with some css file. Remember: When I load RStudio's html output everything is displayed as intended. Here! is a link to the respective GitHub repository.
I hope that there is someone out there having an answer to this.
Thanks!
Note: In case you cannot access the repository/files, you can download the files here. It's the .Rmd as well as the output as .md and .html, and the .RData. As said before, including the .html works, but doesn't have the formatting according to my .css. .md fails in the way it doesn't show figures or leaflet objects, but the formatting is fine. Have a look.
Now, the issue with missing figures was solved.
One has to be careful where to place the folder containing all figures. It has to have the same path as the .md files.
Additionally, the embedding has to be changed in the .md file from  to .
That's it for the figures. Now I'm looking for a smart way of handling the leaflet objects.
I'm working with some pre-existing web files for a website, and I see there are files with .hinc ending. The code inside them is HTML, but Sublime Text 2 doesn't seem to recognize it, and doesn't color anything. Also, the code still runs on the website.
.hinc is an included HTML source file in c++. See this link http://www.open-std.org/jtc1/sc22/wg21/docs/papers/2012/n3325.html#style.hinc
I had to write some documentation. I wrote each page in MS Word and then save each *.docx as htm file. I'm using "HTML Help Workshop" (from microsoft) to compile a chm file.
I was able to sucessfully create a chm file but the problem is that not all images in chm file are displayed. I tried decompiling the *.chm file into another folder and opened each .htm file in web browser. All images are correctly displayed.
Then why aren't they displayed in chm file. Strangely, only some of them aren't displayed. I checked if image format is causing problem, but all images are of same format. I checked if file naming is a problem, but all images are named like image[001-100].jpg in their corresponding folders.
Any idea about whats going wrong?
HTML Help Workshop (HHW) is known to have problems with the HTML generated by Word (or better put: Word generates terrible HTML). Some versions put VML coding around the IMG tags that HHW cannot handle.
Possible solutions:
In Word: Deselect the option 'Rely on VML for displaying graphics in browsers' (Tools > Options > General > Web Options)
In Word: Save as 'filtered HTML'.
In HHW: Manually add the images to the project's [FILES] section.
Let me know if any of this helps.
More information can be found in the HTML Help 1.X FAQ