Python script that can auto-annotate the images - json

Question

I am using the https://github.com/mdhmz1/Auto-Annotate repo. I have tried to custom train my own dataset which has it own COCO JSON format file.
When I try to run
python3 customTrain.py train --dataset=path/to/dir --weights=coco
I get the following error:
Traceback (most recent call last):
File "customTrain.py", line 279, in
train(model)
File "customTrain.py", line 179, in train
dataset_train.load_custom(args.dataset, "train")
File "customTrain.py", line 87, in load_custom
annotations = [a for a in annotations if a['regions']]
File "customTrain.py", line 87, in
annotations = [a for a in annotations if a['regions']]
TypeError: list indices must be integers or slices, not str
My customtrain.py looks like the following:
import os
import sys
import json
import datetime
import numpy as np
import skimage.draw
Root directory of the project
ROOT_DIR = "/home/hiwi/Auto-Annotate"
Import Mask RCNN
sys.path.append(ROOT_DIR) # To find local version of the library
from mrcnn.config import Config
from mrcnn import model as modellib, utils
Path to trained weights file
COCO_WEIGHTS_PATH = os.path.join(ROOT_DIR, "mask_rcnn_coco.h5")
Directory to save logs and model checkpoints, if not provided
through the command line argument --logs
DEFAULT_LOGS_DIR = os.path.join(ROOT_DIR, "logs")
############################################################
Configurations
############################################################
class CustomConfig(Config):
"""Configuration for training on the toy dataset.
Derives from the base Config class and overrides some values.
"""
# Give the configuration a recognizable name
NAME = "custom"
IMAGES_PER_GPU = 1
# Number of classes (including background)
NUM_CLASSES = 1 + 2 # Background + 2 classes
# Number of training steps per epoch
STEPS_PER_EPOCH = 100
# Skip detections with < 90% confidence
DETECTION_MIN_CONFIDENCE = 0.9
############################################################
Dataset
############################################################
class CustomDataset(utils.Dataset):
def load_custom(self, dataset_dir, subset):
"""Load a subset of the Custom dataset.
dataset_dir: Root directory of the dataset.
subset: Subset to load: train or val
"""
# Add classes. We have only one class to add.
self.add_class("custom", 0, "Primary_Track")
self.add_class("custom", 1, "Secondary_Track")
# Train or validation dataset?
assert subset in ["train", "val"]
dataset_dir = os.path.join(dataset_dir, subset)
# Load annotations
# VGG Image Annotator (up to version 1.6) saves each image in the form:
# { 'filename': '28503151_5b5b7ec140_b.jpg',
# 'regions': {
# '0': {
# 'region_attributes': {},
# 'shape_attributes': {
# 'all_points_x': [...],
# 'all_points_y': [...],
# 'name': 'polygon'}},
# ... more regions ...
# },
# 'size': 100202
# }
# We mostly care about the x and y coordinates of each region
# Note: In VIA 2.0, regions was changed from a dict to a list.
annotations1 = json.load(open(os.path.join(dataset_dir, "train.json")))
annotations = list(annotations1.values()) # don't need the dict keys
# The VIA tool saves images in the JSON even if they don't have any
# annotations. Skip unannotated images.
annotations = [a for a in annotations if a['regions']]
# Add images
for a in annotations:
# Get the x, y coordinaets of points of the polygons that make up
# the outline of each object instance. These are stores in the
# shape_attributes (see json format above)
# The if condition is needed to support VIA versions 1.x and 2.x.
if type(a['regions']) is dict:
polygons = [r['shape_attributes'] for r in a['regions'].values()]
else:
polygons = [r['shape_attributes'] for r in a['regions']]
#labelling each class in the given image to a number
custom = [s['region_attributes'] for s in a['regions']]
num_ids=[]
#Add the classes according to the requirement
for n in custom:
try:
if n['name']=="Primary_Track":
num_ids.append(0)
elif n['name']=='Secondary_Track':
num_ids.append(1)
except:
pass
# load_mask() needs the image size to convert polygons to masks.
# Unfortunately, VIA doesn't include it in JSON, so we must read
# the image. This is only managable since the dataset is tiny.
image_path = os.path.join(dataset_dir, a['filename'])
image = skimage.io.imread(image_path)
height, width = image.shape[:2]
self.add_image(
"custom",
image_id=a['filename'], # use file name as a unique image id
path=image_path,
width=width, height=height,
polygons=polygons,
num_ids=num_ids)
def load_mask(self, image_id):
"""Generate instance masks for an image.
Returns:
masks: A bool array of shape [height, width, instance count] with
one mask per instance.
class_ids: a 1D array of class IDs of the instance masks.
"""
# If not a custom dataset image, delegate to parent class.
image_info = self.image_info[image_id]
if image_info["source"] != "custom":
return super(self.__class__, self).load_mask(image_id)
num_ids = image_info['num_ids']
#print("Here is the numID",num_ids)
# Convert polygons to a bitmap mask of shape
# [height, width, instance_count]
info = self.image_info[image_id]
mask = np.zeros([info["height"], info["width"], len(info["polygons"])],
dtype=np.uint8)
for i, p in enumerate(info["polygons"]):
if p['name'] == 'polygon':
# Get indexes of pixels inside the polygon and set them to 1
rr, cc = skimage.draw.polygon(p['all_points_y'], p['all_points_x'])
else:
rr, cc = skimage.draw.rectangle((p['y'], p['x']), extent=(p['height'], p['width']))
rr[rr > mask.shape[0]-1] = mask.shape[0]-1
cc[cc > mask.shape[1]-1] = mask.shape[1]-1
mask[rr, cc, i] = 1
# Return mask, and array of class IDs of each instance. Since we have
# one class ID only, we return an array of 1s
num_ids = np.array(num_ids, dtype=np.int32)
return mask.astype(np.bool), num_ids.astype(np.bool), np.ones([mask.shape[-1]], dtype=np.int32)
#return mask.astype(np.bool), np.ones([mask.shape[-1]], dtype=np.int32)
def image_reference(self, image_id):
"""Return the path of the image."""
info = self.image_info[image_id]
if info["source"] == "Railtrack":
return info["path"]
else:
super(self.__class__, self).image_reference(image_id)
def train(model):
"""Train the model."""
# Training dataset.
dataset_train = CustomDataset()
dataset_train.load_custom(args.dataset, "train")
dataset_train.prepare()
# Validation dataset
dataset_val = CustomDataset()
dataset_val.load_custom(args.dataset, "val")
dataset_val.prepare()
# *** This training schedule is an example. Update to your needs ***
# Since we're using a very small dataset, and starting from
# COCO trained weights, we don't need to train too long. Also,
# no need to train all layers, just the heads should do it.
print("Training network heads")
model.train(dataset_train, dataset_val,
learning_rate=config.LEARNING_RATE,
epochs=30,
layers='heads')
############################################################
Training
############################################################
if name == 'main':
import argparse
# Parse command line arguments
parser = argparse.ArgumentParser(
description='Train Mask R-CNN to detect custom objects.')
parser.add_argument("command",
metavar="<command>",
help="'train' or 'splash'")
parser.add_argument('--dataset', required=False,
metavar="/path/to/custom/dataset/",
help='Directory of the Custom dataset')
parser.add_argument('--weights', required=True,
metavar="/path/to/weights.h5",
help="Path to weights .h5 file or 'coco'")
parser.add_argument('--logs', required=False,
default=DEFAULT_LOGS_DIR,
metavar="/path/to/logs/",
help='Logs and checkpoints directory (default=logs/)')
parser.add_argument('--image', required=False,
metavar="path or URL to image",
help='Image to apply the color splash effect on')
parser.add_argument('--video', required=False,
metavar="path or URL to video",
help='Video to apply the color splash effect on')
args = parser.parse_args()
# Validate arguments
if args.command == "train":
assert args.dataset, "Argument --dataset is required for training"
elif args.command == "splash":
assert args.image or args.video,\
"Provide --image or --video to apply color splash"
print("Weights: ", args.weights)
print("Dataset: ", args.dataset)
print("Logs: ", args.logs)
# Configurations
if args.command == "train":
config = CustomConfig()
# Create model
if args.command == "train":
model = modellib.MaskRCNN(mode="training", config=config,
model_dir=args.logs)
# Select weights file to load
if args.weights.lower() == "coco":
weights_path = COCO_WEIGHTS_PATH
# Download weights file
if not os.path.exists(weights_path):
utils.download_trained_weights(weights_path)
elif args.weights.lower() == "last":
# Find last trained weights
weights_path = model.find_last()
elif args.weights.lower() == "imagenet":
# Start from ImageNet trained weights
weights_path = model.get_imagenet_weights()
else:
weights_path = args.weights
# Load weights
print("Loading weights ", weights_path)
if args.weights.lower() == "coco":
# Exclude the last layers because they require a matching
# number of classes
model.load_weights(weights_path, by_name=True, exclude=[
"mrcnn_class_logits", "mrcnn_bbox_fc",
"mrcnn_bbox", "mrcnn_mask"])
else:
model.load_weights(weights_path, by_name=True)
# Train or evaluate
if args.command == "train":
train(model)
else:
print("'{}' is not recognized. "
"Use 'train' or 'splash'".format(args.command))