I have a simple pentaho transformation: One input from SQL Server, and two outputs, one to local MySQL and another to Google cloud MySQL. The total rows from input are 3000 with six columns
My problem is that in Google cloud MySQL ouput is too slow, the performance is 6 minutes in to insert 3000 rows!, howerever in local MySQL output the performance is 1 second.
is there any reason for this problema?, Can I fix it?.
Pentaho Transformation image
Thanks!
EDIT:
BEFORE INSERT
Screenshot before insert
AFTER INSERT
Screenshot after insert
Here are a few things to verify in terms of Cloud SQL performance in this case:
Enable lock monitoring which can be used for performance tuning. Here is how
If using a First Generation instance, using asynchronous mode might be much faster. Here is how
Check the locations of the writer and database; sending data a long distance introduces latency.
Caching is extremely important for read performance, which may come into play depending on the query for the insert. The entire data set should fit in 70% of the instance’s RAM.
If the query is CPU intensive and constitutes the majority of the workload, the instance might be throttled; increase the tier.
Since the connection to the database seems to be done from an external application, here is how to set this up properly. More information about the connection configuration and the insert statement is required to determine if indeed connections are established for each requests as suspected by others.
If using InnoDB (mandatory for 2nd generation instances and recommended for 1st generation ones), here are some best practices to follow to optimize performance, from the official MySQL documentation.
You should add this parameter to your connection parameter:
rewriteBatchedStatements=true
This will drastically improve the inserts speed.
Check this for more info: https://anonymousbi.wordpress.com/2014/02/11/increase-mysql-output-to-80k-rowssecond-in-pentaho-data-integration/
Related
Just some contexts: In our old data pipeline system, we are running MySQL 5.6. or Aurora on Amazon rds. Bad thing about our old data pipeline is running a lot of heavy computations on the database servers because we are handcuffed by what was designed: treating transactional databases as data warehouse and our backend API directly “fishing” the databases heavily in our old system. We are currently patching this old data pipeline, while re-design the new data warehouse in SnowFlake.
In our old data pipeline system, the data pipeline calculation is a series of sequential MySQL queries. As our data grows bigger and bigger in the old data pipeline, what the problem now is the calculation might just hang forever at, for example, the step 3 MySQL query, while all metrics in Amazon CloudWatch/ grafana we are monitoring (CPU, database connections, freeable memory, network throughput, swap usages, read latency, available storage, write latency, etc. ) looks normal. The MySQL slow query log is not really helpful here because each of our query in the data pipeline is essentially slow anyway (can takes hours to run a query because the old data pipeline is running a lot of heavy computations on the database servers). The way we usually solve these problems is to “blindly” upgrade the MySQL/Aurora Amazon rds service and hoping it will solve the issue. I am wondering
(1) What are the recommended database metrics in MySQL 5.6. or Aurora on Amazon rds we should monitor real-time to help us identify why a query freezes forever? Like innodb_buffer_pool_size?
(2) Is there any existing tool and/or in-house approach where we can predict how many hardware resources we need before we can confidently execute a query and know it will succeed? Could someone share some 2 cents?
One thought: Since Amazon rds sometimes is a bit blackbox, one possible way is to host our own MySQL server on an Amazon EC2 instance in parallel to our Amazon MySQL 5.6/Aurora rds production server, so we can ssh into MySQL server and run a lot of command tools like mytop (https://www.tecmint.com/mysql-performance-monitoring/) to gather a lot more real time MySQL metrics which can help us triage the issue. Open to any 2 cents from gurus. Thank you!
None of the tools mentioned at that link should need to run on the database server itself, and to the extent that this is true, there should be no difference in their behavior if they aren't. Run them on any Linux server, giving the appropriate --host and --user and --password arguments (in whatever form they may expect). Even mysqladmin works remotely. Most of the MySQL command line tools do (such as the mysql cli, mysqldump, mysqlbinlog, and even mysqlcheck).
There is no magic coupling that most administrative utilities can gain by running on the same server as MySQL Server itself -- this is a common misconception but, in fact, even when running on the same machine, they still have to make a connection to the server, just like any other client. They may connect to the unix socket locally rather than using TCP, but it's still an ordinary client connection, and provides no extra capabilities.
It is also possible to run an external replica of an RDS/MySQL or Aurora/MySQL server on your own EC2 instance (or in your own data center, even). But this isn't likely to tell you a whole lot that you can't learn from the RDS metrics, particularly in light of the above. (Note also, that even replica servers acquire their replication streams using an ordinary client connection back to the master server.)
Avoid the temptation to tweak server parameters. On RDS, most of the defaults are quite sane, and unless you know specifically and precisely why you want to adjust a parameter... don't do it.
The most likely explanation for slow queries... is poorly written queries and/or poorly designed indexes.
If you are not familiar with EXPLAIN SELECT, then you need to learn it, live it, an love it. SQL is declarative, not procedural. That is, SQL tells the server what you want -- not specifically how to obtain it internall. For example: SELECT ... FROM x JOIN y tells the server to match up the rows from table x and y ON a certain criteria, but does not tell the server whether to read from x then find the matching rows in y... or read from y and find the matching rows in x. The net result is the same either way -- it doesn't matter which table the server examines first, internally -- but if the query or the indexes don't allow the server to correctly deduce the optimum path to the results you've requested, it can spend countless hours churning through unnecessary effort.
Take for an extreme and overly-simplified example, a table with millions of rows and table with 1 row. It would make sense to read the small table first, so you know what 1 value you're trying to join in the large table. It would make no sense to read throuh each row in the large table, then go over and check the small table for a match for each of the millions of rows. The order in which you join tables can be different than the order in which the actual joining is done.
And that's where EXPLAIN comes in. This allows you to inspect the query plan -- the strategy the internal query optimizer has concluded will get it to the answer you need with the least amount of effort. This is the core of the magic of relational database systems -- finding the correct solution in the optimal time, based on what it knows about the data. EXPLAIN shows you the order in which the tables are being accessed, how they're being joined, which indexes are being used, and an estimate of the number of rows from each table are involved -- and these numbers multiply together to give you an estimate of the number of permutations involved in resolving your query. Two small tables, each with 50,000 rows, joined without a proper index, means an entirely unreasonable 2,500,000,000 unique combinations between the two tables that must be evaluated; every row must be compared to every other row. In short, if this turns out to be the kind of thing that you are (unknowingly) asking the server to do, then you are definitely doing something wrong. Inspecting your query plan should be second nature any time you write a complex query, to ensure that the server is using a sensible strategy to resolve it.
The output is cryptic, but secret decoder rings are available.
https://dev.mysql.com/doc/refman/5.7/en/explain.html#explain-execution-plan
I'm not sure if caching would be the correct term for this but my objective is to build a website that will be displaying data from my database.
My problem: There is a high probability of a lot of traffic and all data is contained in the database.
My hypothesized solution: Would it be faster if I created a separate program (in java for example) to connect to the database every couple of seconds and update the html files (where the data is displayed) with the new data? (this would also increase security as users will never be connecting to the database) or should I just have each user create a connection to MySQL (using php) and get the data?
If you've had any experiences in a similar situation please share, and I'm sorry if I didn't word the title correctly, this is a pretty specific question and I'm not even sure if I explained myself clearly.
Here are some thoughts for you to think about.
First, I do not recommend you create files but trust MySQL. However, work on configuring your environment to support your traffic/application.
You should understand your data a little more (How much is the data in your tables change? What kind of queries are you running against the data. Are your queries optimized?)
Make sure your tables are optimized and indexed correctly. Make sure all your query run fast (nothing causing a long row locks.)
If your tables are not being updated very often, you should consider using MySQL cache as this will reduce your IO and increase the query speed. (BUT wait! If your table is being updated all the time this will kill your server performance big time)
Your query cache is set to "ON". Based on my experience this is always bad idea unless your data does not change on all your tables. When you have it set to "ON" MySQL will cache every query. Then as soon as they data in the table changes, MySQL will have to clear the cached query "it is going to work harder while clearing up cache which will give you bad performance." I like to keep it set to "ON DEMAND"
from there you can control which query should be cache and which should not using SQL_CACHE and SQL_NO_CACHE
Another thing you want to review is your server configuration and specs.
How much physical RAM does your server have?
What types of Hard Drives are you using? SSD is not at what speed do they rotate? perhaps 15k?
What OS are you running MySQL on?
How is the RAID setup on your hard drives? "RAID 10 or RAID 50" will help you out a lot here.
Your processor speed will make a big different.
If you are not using MySQL 5.6.20+ you should consider upgrading as MySQL have been improved to help you even more.
How much RAM does your server have? is your innodb_log_buffer_size set to 75% of your total physical RAM? Are you using innodb table?
You can also use MySQL replication to increase the read sources of the data. So you have multiple servers with the same data and you can point half of your traffic to read from server A and the other half from Server B. so the same work will be handled by multiple server.
Here is one argument for you to think about: Facebook uses MySQL and have millions of hits per seconds but they are up 100% of the time. True they have trillion dollar budget and their network is huge but the idea here is to trust MySQL to get the job done.
I have published my website on Amazon EC2 (Singapore region) and I have used MySQL RDS instance for the data storage. Everything is working very fine except performance.
I seems that, my all queries, especially the select statement, is performing very slowly. If I check this issue on my local PC, there it is working very well. But when I am trying to get data from RDS instance, it is very slow. Some of the select statements takes 2-3 seconds to fetch data.
I have properly tuned up all table indexes, and normalized/de-normalized as required. I have made all necessary settings on RDS custom parameter group (eg. max_connection, buffer etc). I don't know if I am missing something, but it didn't work for me - performance didn't increase.
So, can someone please help me with this issue?
It is worth noting that, for whatever reason, MySQL query cache is OFF by default in RDS. We learned that the hard way ourselves this week.
This won't help performance of your initial query, but it may speed things up in general.
To re-enable query cache:
Log in to the RDS Console
Click on your RDS instance to view it's details
Edit the Database Parameter Group
Be sure to set both query_cache_size and query_cache_type
(Disclaimer: I am not a DBA so there may be additional things I'm missing here)
For me, it was nothing to do with MySQL but rather the instance type I was on t2.medium. The problem is I ran out of CPU credits because the load on the DB was too high and the balance kept going down until finally, I was getting far fewer credits hourly than were needed.
Here is what I saw in RDS CloudWatch under CPU Credit Usage:
If you have the same problem it may be time to switch to a different instance. Here is the list of instance types:
https://aws.amazon.com/rds/instance-types/
Hope this helps.
It is important to have your RDS and EC2 instances not just in the same region but also in the same availability zone to minimize the latency.
I had an API hosted in Ireland on EC2 and moved the Database to a MySQL cluster in Virginia USA that we had set up for another project and the round trip on every SQL query made the API unusable.
RDS MySQL performance can be increased in following ways assuming the system has more read ratio:
Use Larger instance types, they come with better NW bandwidth. Example AWS Quadruple EXL comes with 1,000 Mbps bandwidth.
Use PIOPS storage you can extract 12,500 IOPS of 16KB from MySQL DB
If lots of read is performed, add one or more Read Replica's to increase read performance
Apply standard practices like: Tune the queries, apply the indexes etc
First i highly recommend to look over these queries using
SHOW FULL PROCESSLIST
You can read more about it on SHOW FULL PROCESSLIST
This will show you the time each query take.
Then you can use
EXPLAIN
You can read more about it on EXPLAIN
This will show you if you need some enhancement on your queries
You can check where the query is taking time by making use of profiling. Use the below query:
set profiling=1
execute your select query
show profile
This will tell you about the status of the query and where the query is spending its time. If the sum of all the time returned by the profiling is less than the actual execution time of the query, then maybe other factors like Network bandwidth may be the cause of it.
Always should deploy source and rds in the same AWS availability zone for lower network latency and Should create a private endpoint link in VPC for RDS to connect RDS endpoint through the internal network instead of routing through the internet.
Reference: https://docs.aws.amazon.com/AmazonRDS/latest/UserGuide/vpc-interface-endpoints.html
I found that after migrating to RDS all my database Indexes are gone! They weren't migrated along with the schema and data. Make sure you're indexes are there.
I would like to convert my stats tracking system not to write to the database directly, as we're hitting bottlenecks.
We're currently using memcached for certain aspects of the site, and I wanted to use it for storing stats and committing them to mysql DB periodically.
The issue lies however in the number of items (which is in the millions) for which potentially there could be stats collected between the cronjob runs that would commit them into the database. Other than running a SELECT * FROM data and checking for existence of every single memcache key, and then updating the table.... is there any other way to do this?
(I'm not saying below is gospel, this is just my gut feeling. As said later on, I don't have the specifics of your system :) And obviously no offence meant etc :) )
I would advice against using memcached for this. Memcached is build te quickly retrieve values that you've gotten before, not to store values. The big difference is that is your cache is getting full, you'll loose your data.
Normally, you'd just have no data in your cache, and recollect the data from the source, which is impossible in this case. That alone would be a reason for me to try an dissuade you from this.
Now you say the major problem is the mysql connection limit you are hitting. If you do simple stuff (like what we talked about in the comments: the insert delayed), it's just a case of increasing the limit. You should probably have enough power to have your scripts/users go to the database once and say "this should eventually be added", and then go away. If your users can't even open 1 connection for that, there's a serious resource problem you probably won't fix by adding extra layers of cache?
Obviously hard to say without any specs of the system, soft and hardware, but my suggestion would be to see if you can just let them open their connections by increasing the limit, and fiddle with the server variables a bit, instead of monkey-patching your system by using a memcached as an in-between layer.
I had a similar issue with statistic data. But please don't use memcached for it. You can't be sure that ALL your items will moved to DB. You can loose data and/or double process data.
You should analyse your bottleneck against how much data you are writing/reading and how many connections you need. And than switch to something scalable like Hadoop, Cassandra, Scripe and other systems.
You need to provide additional information on the platform that you are running: O/S, database (version), storage engine, RAM, CPU (if possible)?
Are you inserting into a single table or more than one table?
Can you disable the indexes on the tables you are inserting into as this slows down the insert functions.
Are you running any triggers or stored procedures to compute values as you insert the raw data?
Which are the performance considerations I should keep in mind when I'm planning an SQL Azure application? Azure Storage, and the worker and the web roles looks very scalable, but if at the end they are using one database... it looks like the bottleneck.
I was trying to find numbers about:
How many concurrent connections does
SQL Azure support?
Which is the bandwidth?
But no luck.
For example, I'm planning and application that uses a very high level of inserts, but I need return the result of an aggregate function each time (e.g.: the sum of all records with same key in a column), so I can not go with table storage.
Batching is an option, but time response is critical as well, so I'm afraid the database will be bloated with lot of connections.
Sharding is another option, but even when the amount of inserts is massive, the amount of data is very small, 4 to 6 columns with one PK and no FK. So even a 1Gb DB would be an overkill (and an overpay :D) for a partition.
Which would be the performance keys I should keep in mind when I'm facing these kind of applications?
Cheers.
Achieving both scalability and performance can be very difficult, even in the cloud. Your question was primarily about scalability, so you may want to design your application in such a way that your data becomes "eventually" consistent, using queues for example. A worker role would listen for incoming insert requests and would perform the insert asynchronously.
To minimize the number of roundtrips to the database and optimize connection pooling make sure to batch your inserts as well. So you could send 100 inserts in one shot. Also keep in mind that SQL Azure now supports MARS (multiple active recordsets) so that you can return multiple SELECTs in a single batch back to the calling code. The use of batching and MARS should reduce the number of database connections to a minimum.
Sharding usually helps for Read operations; not so much for inserts (although I never benchmarked inserts with sharding). So I am not sure sharding will help you that much for your requirements.
Remember that the Azure offering is designed first for scalability and reasonable performance in a multitenancy environment, where your database is shared with others on the same server. So if you need strong performance with guaranteed response time you may need to reevaluate your hosting choices or indeed test the performance boundaries of Azure for your needs as suggested by tijmenvdk.
SQL Azure will throttle your connections if any form of resource contention occurs (this includes heavy load but might also occur when your database is physically moved around). Throttling is non-deterministic, meaning that you cannot predict if and when this happens. When throttling, SQL Azure will drop your connection, requiring you to perform a retry. Number of connections supported and bandwidth is not published "by design" due to the flexible nature of the underlying infrastructure. Having said that, the setup is optimized for high availability, not high throughput.
If the bursts happen at a known time, you might consider sharding just during those bursts and consolidating the data after the burst has happened. Another way to handle this, is to start queueing/batching writes if and only if throttling occurs. You can use an Azure Queue for that plus a worker role to empty the queue later. This "overflow mechanism" has the advantage of automatically engaging if throttling occurs.
As an alternative you could use Azure Table Storage and keep a separate table of running totals that you can report back instead of performing an aggregation over the data to return the required sum of all records (this might be tricky due to the lack of locking on the tables though).
Apologies for stating the obvious, but the first step would be to test if you run into throttling at all in your scenario. I would give the overflow solution a try.