I am trying to install MySQL source code in Linux system and ended up with this error while executing cmake ..
CMake Error at /usr/share/cmake-3.5/Modules/TestBigEndian.cmake:51 (message):
no suitable type found
Call Stack (most recent call first):
configure.cmake:400 (TEST_BIG_ENDIAN)
CMakeLists.txt:1015 (INCLUDE)
I am new to this. How can I resolve this error?
Here is my config:
CMake version - 3.5.1
GCC version - 5.4.0
ubuntu - 16.4.11(64 bit)
Link to my CMakeError.log file
https://drive.google.com/open?id=1NzMRvXsJE-YMDDuW32lkdi0IvY3MfJXf
Related
I am trying to install the python package "imblearn" to balanace datasets,
with the command pip install imblearn.
but it keeps failing.
trying from cmdand from PowerShell with admin privileges,
with regular pip command, and with git clone to the repo and then pip install.
everything is failing.
the error is:
C:\Users\ronke>pip install imblearn
Collecting imblearn
Using cached imblearn-0.0-py2.py3-none-any.whl (1.9 kB)
Collecting imbalanced-learn
Using cached imbalanced_learn-0.10.1-py3-none-any.whl (226 kB)
Requirement already satisfied: scipy>=1.3.2 in c:\networks\python3.8\lib\site-packages (from imbalanced-learn->imblearn) (1.6.3)
Collecting scikit-learn>=1.0.2
Using cached scikit-learn-1.2.0.tar.gz (7.2 MB)
Installing build dependencies ... error
error: subprocess-exited-with-error
× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> [73 lines of output]
Ignoring numpy: markers 'python_version == "3.10" and platform_system == "Windows" and platform_python_implementation != "PyPy"' don't match your environment
Collecting setuptools<60.0
Using cached setuptools-59.8.0-py3-none-any.whl (952 kB)
Collecting wheel
Using cached wheel-0.38.4-py3-none-any.whl (36 kB)
Collecting Cython>=0.29.24
Using cached Cython-0.29.32-py2.py3-none-any.whl (986 kB)
Collecting oldest-supported-numpy
Using cached oldest_supported_numpy-2022.11.19-py3-none-any.whl (4.9 kB)
Collecting scipy>=1.3.2
Using cached scipy-1.9.3.tar.gz (42.1 MB)
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Installing backend dependencies: started
Installing backend dependencies: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'error'
error: subprocess-exited-with-error
Preparing metadata (pyproject.toml) did not run successfully.
exit code: 1
[37 lines of output]
+ meson setup --prefix=c:\networks\python3.8 C:\Users\ronke\AppData\Local\Temp\pip-install-n9p_hxtm\scipy_cef72cd617894d719469ea6e03d892cb C:\Users\ronke\AppData\Local\Temp\pip-install-n9p_hxtm\scipy_cef72cd617894d719469ea6e03d892cb\.mesonpy-jv80z8m8\build --native-file=C:\Users\ronke\AppData\Local\Temp\pip-install-n9p_hxtm\scipy_cef72cd617894d719469ea6e03d892cb\.mesonpy-native-file.ini -Ddebug=false -Doptimization=2
The Meson build system
Version: 1.0.0
Source dir: C:\Users\ronke\AppData\Local\Temp\pip-install-n9p_hxtm\scipy_cef72cd617894d719469ea6e03d892cb
Build dir: C:\Users\ronke\AppData\Local\Temp\pip-install-n9p_hxtm\scipy_cef72cd617894d719469ea6e03d892cb\.mesonpy-jv80z8m8\build
Build type: native build
Project name: SciPy
Project version: 1.9.3
Activating VS 17.1.3
C compiler for the host machine: cl (msvc 19.31.31105 "Microsoft (R) C/C++ Optimizing Compiler Version 19.31.31105 for x64")
C linker for the host machine: link link 14.31.31105.0
C++ compiler for the host machine: cl (msvc 19.31.31105 "Microsoft (R) C/C++ Optimizing Compiler Version 19.31.31105 for x64")
C++ linker for the host machine: link link 14.31.31105.0
Host machine cpu family: x86_64
Host machine cpu: x86_64
Compiler for C supports arguments -Wno-unused-but-set-variable: NO
Compiler for C supports arguments -Wno-unused-but-set-variable: NO (cached)
Compiler for C supports arguments -Wno-unused-function: NO
Compiler for C supports arguments -Wno-conversion: NO
Compiler for C supports arguments -Wno-misleading-indentation: NO
Compiler for C supports arguments -Wno-incompatible-pointer-types: NO
Library m found: NO
..\..\meson.build:57:0: ERROR: Unknown compiler(s): [['ifort'], ['gfortran'], ['flang'], ['pgfortran'], ['g95']]
The following exception(s) were encountered:
Running `ifort --version` gave "[WinError 2] The system cannot find the file specified"
Running `ifort -V` gave "[WinError 2] The system cannot find the file specified"
Running `gfortran --version` gave "[WinError 2] The system cannot find the file specified"
Running `gfortran -V` gave "[WinError 2] The system cannot find the file specified"
Running `flang --version` gave "[WinError 2] The system cannot find the file specified"
Running `flang -V` gave "[WinError 2] The system cannot find the file specified"
Running `pgfortran --version` gave "[WinError 2] The system cannot find the file specified"
Running `pgfortran -V` gave "[WinError 2] The system cannot find the file specified"
Running `g95 --version` gave "[WinError 2] The system cannot find the file specified"
Running `g95 -V` gave "[WinError 2] The system cannot find the file specified"
A full log can be found at C:\Users\ronke\AppData\Local\Temp\pip-install-n9p_hxtm\scipy_cef72cd617894d719469ea6e03d892cb\.mesonpy-jv80z8m8\build\meson-logs\meson-log.txt
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
Encountered error while generating package metadata.
See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error
× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.
Does someone know how to fix it?
thanks
Ron
I've condensed this to show the key part of the error:
Collecting scipy>=1.3.2
Using cached scipy-1.9.3.tar.gz (42.1 MB)
...
..\..\meson.build:57:0: ERROR: Unknown compiler(s): [['ifort'], ['gfortran'], ['flang'], ['pgfortran'], ['g95']]
Which is saying that scipy==1.9.3 failed to compile because a Fortran compiler was not availalbe.
This is probably caused by a 32-bit version of Python / Windows, since pre-compiled scipy and scikit-learn wheels are being phased out for 32-bit systems, and we're no longer testing 32-bit Windows in imblearn (see PR#936).
One possible fix is to install a copy of Python with Anaconda or Miniconda, then:
conda install -c conda-forge imbalanced-learn
When I ran 'pip install rpy2', it reported error:
clang: error: unsupported option '-fopenmp'
I installed llvm with brew since it supports the option. But I have to link brew's llvm (clang-5.0) to clang command. Then I ran 'pip install rpy2', now I got new error. How do I fix it?
ld: library not found for -lomp
clang-5.0: error: linker command failed with exit code 1 (use -v to see invocation)
error: command '/usr/local/bin/clang' failed with exit status 1
There an open issue on the rpy2 tracker with a similar error message, and an active discussion where some are reporting success compiling rpy2 after the combination of dev tools provided by Apple and requirements to compile the latest R release became incompatible:
https://bitbucket.org/rpy2/rpy2/issues/403/cannot-pip-install-rpy2-with-latest-r-340
I compiled caffe successfully at first and tried the MNIST example. But there is something wrong when I tried to install pycaffe. So I reinstalled caffe. However I received compiling error this time.
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see
invocation)
make: *** [.build_release/lib/libcaffe.so.1.0.0] Error 1
After I input the command 'clang -v'
Target: x86_64-apple-darwin16.5.0
Thread model: posix
InstalledDir:/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
I figured out it was the problem between two version of python. The system default version and the anaconda one. You have to make sure the compiling and executing using the same one.
I want to install either oursql or MySQLdb on a Cygwin box. (Pywikibot can work with either.)
Unfortunately both easy_install as well as pip fail at installing both.
easy_install-2.7 oursql
Searching for oursql
Reading https://pypi.python.org/simple/oursql/
Reading http://launchpad.net/oursql
Best match: oursql 0.9.3.1
Downloading https://pypi.python.org/packages/source/o/oursql/oursql-0.9.3.1.zip#md5=ad599ea2d95fc695df7195e9801b45c2
Processing oursql-0.9.3.1.zip
Writing /tmp/easy_install-kA8kUA/oursql-0.9.3.1/setup.cfg
Running oursql-0.9.3.1/setup.py -q bdist_egg --dist-dir /tmp/easy_install-kA8kUA/oursql-0.9.3.1/egg-dist-tmp-Jh5tJ1
cython not found, using previously-cython'd .c file.
mysql_config --cflags
In file included from oursqlx/oursql.c:235:0:
oursqlx/compat.h:13:19: fatal error: mysql.h: No such file or directory
#include "mysql.h"
^
compilation terminated.
error: Setup script exited with error: command 'gcc' failed with exit status 1
easy_install-2.7 mysql-python
Searching for mysql-python
Reading https://pypi.python.org/simple/mysql-python/
Best match: MySQL-python 1.2.5
Downloading https://pypi.python.org/packages/source/M/MySQL-python/MySQL-python-1.2.5.zip#md5=654f75b302db6ed8dc5a898c625e030c
Processing MySQL-python-1.2.5.zip
Writing /tmp/easy_install-JwMXUV/MySQL-python-1.2.5/setup.cfg
Running MySQL-python-1.2.5/setup.py -q bdist_egg --dist-dir /tmp/easy_install-JwMXUV/MySQL-python-1.2.5/egg-dist-tmp-jjPy0m
error: Setup script exited with error: command 'gcc' terminated by signal 11
I haven't done much gcc fixing in the past decade so I'm not sure how to handle this.
Try this, this may help you: Windows GCC (MinGW) binaries for Python developers
I am having a hard time figuring out what this error means.
I have the following bower.json:
...
"dependencies":{
"angular-route":"~1.2.18",
"angular":"~1.2.18"
}
Upon installing my bower packages through bower install I get the following error:
bower angular-route#~1.2.20 error Arguments to path.join must be strings
Stack trace:
TypeError: Arguments to path.join must be strings
at path.js:360:15
at Array.filter (native)
at Object.exports.join (path.js:358:36)
at GitHubResolver._checkout (/home/ubuntu/.nvm/v0.10.26/lib/node_modules/bower/lib/core/resolvers/GitHubResolver.js:54:21)
at /home/ubuntu/.nvm/v0.10.26/lib/node_modules/bower/lib/core/resolvers/GitResolver.js:69:21
at _fulfilled (/home/ubuntu/.nvm/v0.10.26/lib/node_modules/bower/node_modules/p-throttler/node_modules/q/q.js:798:54)
at self.promiseDispatch.done (/home/ubuntu/.nvm/v0.10.26/lib/node_modules/bower/node_modules/p-throttler/node_modules/q/q.js:827:30)
at Promise.promise.promiseDispatch (/home/ubuntu/.nvm/v0.10.26/lib/node_modules/bower/node_modules/p-throttler/node_modules/q/q.js:760:13)
at /home/ubuntu/.nvm/v0.10.26/lib/node_modules/bower/node_modules/p-throttler/node_modules/q/q.js:574:44
at flush (/home/ubuntu/.nvm/v0.10.26/lib/node_modules/bower/node_modules/p-throttler/node_modules/q/q.js:108:17)
Console trace:
Trace
at StandardRenderer.error (/home/ubuntu/.nvm/v0.10.26/lib/node_modules/bower/lib/renderers/StandardRenderer.js:72:17)
at Logger.<anonymous> (/home/ubuntu/.nvm/v0.10.26/lib/node_modules/bower/bin/bower:111:22)
at Logger.EventEmitter.emit (events.js:95:17)
at Logger.emit (/home/ubuntu/.nvm/v0.10.26/lib/node_modules/bower/node_modules/bower-logger/lib/Logger.js:29:39)
at /home/ubuntu/.nvm/v0.10.26/lib/node_modules/bower/lib/commands/index.js:40:20
at _rejected (/home/ubuntu/.nvm/v0.10.26/lib/node_modules/bower/node_modules/q/q.js:797:24)
at /home/ubuntu/.nvm/v0.10.26/lib/node_modules/bower/node_modules/q/q.js:823:30
at Promise.when (/home/ubuntu/.nvm/v0.10.26/lib/node_modules/bower/node_modules/q/q.js:1035:31)
at Promise.promise.promiseDispatch (/home/ubuntu/.nvm/v0.10.26/lib/node_modules/bower/node_modules/q/q.js:741:41)
at /home/ubuntu/.nvm/v0.10.26/lib/node_modules/bower/node_modules/q/q.js:557:44
System info:
Bower version: 1.3.7
Node version: 0.10.26
OS: Linux 3.13.0-29-generic x64
Now, I have to mention that I have done the same thing for about a week, and everything was working correctly, with exactly the same setup.
I have noticed that https://github.com/angular/angular.js has released a new version 1.2.20 recently, but even installing that I get the same error.
Some context: I am using nodejs, express and angular in my application. I can provide more info if needed (e.g., package.json, main server file).
Any help would be highly appreciated.
See the answer here: Bower - error when installing package "Arguments to path.join must be strings"
Fix: bower cache clean and update to Bower 1.3.8.