I have a process that works in the production environment, that I need to get working on my local Windows 10 environment. It is a Perl script that calls mySql stored procedures.
I have installed ActivePerl 5.26.3 (64-Bit) from Active State. When I attempt to execute the script I get an error:
Can't locate DBD/mysql.pm (you may need to install the DBD::mysql module)...
So, I went to https://metacpan.org/release/DBD-mysql and found instructions that indicated I needed to do the following:
perl -MCPAN -e shell
install DBD::mysql
But, when I type the first command I get a message stating:
It looks like you don't have a C compiler and make utility installed. Trying to install dmake and the MinGW gcc compiler using the Perl Package Manager. This may take several minutes....
Then it goes thru what appears to be a successful installation. So I type in the second command. It scrolls by for a while, but ends with:
Failed during this command
DVEEDEN/DBD-mysql-4.050.tar.gz: writemakefile NO 'C:\Perl64\bin\perl.exe MakeFile.PL INSTALLDIRS=site' returned status 512
Not sure how to proceed.
For ActivePerl, use their package manager PPM.
Or, use Strawberry Perl for a more unixy experience. It comes with all the stuff to compile and install modules.
No matter which Perl you use, on Windows or elsewhere, modules typically need to be compiled the same. Mixing compilers (such as Visual Studio and gcc) or options can lead to incompatible binaries. The same might happen across Perl versions too. That means to use the same Perl (and compilation method) for everything in your project).
The cpan utility doesn't figure out those things for you. It does whatever it's configured to do.
For what it's worth, the cpan method to install modules can be simpler:
$ cpan DBD::mysql
Related
While trying to install Perl modules like JSON::XS or YAML::XS, i receive the same error:
XS.xs:1:10: fatal error: 'EXTERN.h' file not found
I use MacBook, xCode is up to date, everything else that could help is up to date too.
Since OS X El Capitan, Apple introduced System Integrity Protection which restricts writing to /usr/lib /usr/bin and other sensitive directories (even to root or sudo user) that are used by the installation of Perl bundled with the Operating System. This can cause issues when it comes to installing new modules and also if trying to install XS modules ( those linked to external C libraries ).
For this reason you should not consider the default Perl installation as a working development environment, especially if you are installing custom modules.
Check out this thread on PM and others. I had since El-Capitan managed to solve this before by manually building from tarball and adding a few params or environment variables to set the paths believing that it would be best to retain use of the system Perl but this is not the way to go. This makes your environment difficult to build but also brittle and sensitive to OS updates that may either break things in many different ways.
The best practice seems to be starting with a Perl using brew install perl and work in this environment, remembering to setup your bash_profile as directed by the installer.
Also worth remembering to do a brew link perl. If you receive warnings about this clobbering what looks like system Perl libraries don't worry - these are likely modules that were installed by you over the top and it will cause you less trouble to link over these. If you have concerns, make a note of which module installs will be cleared and re-install them once your environment is configured ( ie your module installer approach is configured using cpanm or sticking with the old perl -MCPAN -e shell etc)
This new Perl setup from brew eliminates the need to continuing running sudo which adds another layer of things that can go wrong as environment variables don't follow through and permission conflicts arise etc.
Finally to simplify package/module installation I suggest doing a brew install cpanminus. If you had previously already installed this, you can ensure the paths etc are configured by doing a brew reinstall cpanminus
If you want to take it another step further then you can install perlbrew as well which will give you the ability to run multiple versions of Perl as your user and configure these with their own libs and modules which can be very useful particularly if aligning with your production environment for testing etc.
One problem you may face if moving from system Perl to this kind of approach is needing to deal with any hangovers from installing things with sudo. It wis worth taking a little time to get all this set up right though and your issues going forward will be greatly reduced and you won't be left with that nagging feeling that you don't want to change anything for fear of it all breaking.
I have also come across a Perl Blog Article that suggests a fix for XS issues with perlbrew on Mojave
This Gist described updating your cpan shell install root though this shouldn't be necessary unless your cpan is stuck in an old config after taking steps above.
I've also raised this as a new issue on PerlMonks
After reading https://developer.apple.com/documentation/xcode_release_notes/xcode_10_release_notes#3035624 and installing the Additional headers via
sudo installer -pkg /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg -target /
I successfully compiled without the missing 'EXTERN.h' error
In order to follow the common advice I also tried with Perlbrew to install a dedicated development version of Perl. Especially with the advice in mind First, do not use the system Perl on MacOS. The installed version is for Apple, not for you (see the discussion here: https://www.perlmonks.org/?node_id=1224727).
Unfortunately, the following error occurred:
Test Summary Report
-------------------
porting/libperl.t (Wstat: 65280 Tests: 35 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
Files=2653, Tests=1217766, 708 wallclock secs (52.74 usr 9.40 sys + 395.38 cusr 49.90 csys = 507.42 CPU)
Result: FAIL
make: *** [test_harness] Error 1
##### Brew Failed #####
Therefore, I decided to install it the following way (and not following the advice due to the error).
Even after having the above mentioned macOS SDK headers already installed on Catalina (macOS 10.15.2) it didn't work for me. I faced the issue during the installation of the Perl module Mac-SystemDirectory-0.13. The following steps (by identifying the missing file in hope of having a more generic approach for more or less equivalent issues) did the trick:
Locate the header file (in this case EXTERN.h)
sudo find /Library -type f -name EXTERN.h
/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/System/Library/Perl/5.18/darwin-thread-multi-2level/CORE/EXTERN.h
/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Perl/5.28/darwin-thread-multi-2level/CORE/EXTERN.h
/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Perl/5.18/darwin-thread-multi-2level/CORE/EXTERN.h
Ensure the installed Perl version (here 5.18) match the header file:
perl -v | grep version
This is perl 5, version 18, subversion 4 (v5.18.4) built for darwin-thread-multi-2level
Export the path for the C-Compiler (note MacOSX10.15.sdk for Catalina and Perl Version 5.18)
export CPATH=/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Perl/5.18/darwin-thread-multi-2level/CORE
Invoke the Makefile.PL with perl
perl Makefile.PL
BTW — For anybody who's still struggling with this, my workaround was:
bash% module="Sub::Util" # For example
bash% cpanm --configure-args="INC=-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Perl/5.18/darwin-thread-multi-2level/CORE" "$module"
Please try this
CPATH=$(dirname $(find /usr/local/Cellar/ -name EXTERN.h)) cpan JSON::XS
For Big Sur and perl 5.30, EXTERN.h is at /Library/Developer/CommandLineTools/SDKs/MacOSX11.3.sdk/System/Library/Perl/5.30/darwin-thread-multi-2level/CORE
I'm trying to upgrade CPAN itself and got that error. But I have /usr/bin/cpan and I can't write there so I have to tweak it to write the updated version to /usr/local/bin/cpan.
No promises, but yum install perl-devel worked for me.
As #huyz has helpfully pointed out, if you hit this error on a Mac, you don't have this option, even though this is probably your issue, and you need to follow one of the above methods of getting a version of Perl that isn't missing important chunks, as per other answers.
But if, dear reader, you hit this error on a linux host, as I did, then this might be an option for you.
Building on what E Lisse suggested, you might also have luck looking in
/System/Volumes/Data/Library/Developer/CommandLineTools/SDKs/
For example:
CPATH=$(dirname $(find /System/Volumes/Data/Library/Developer/CommandLineTools/SDKs/ -name EXTERN.h)) cpan JSON::XS
You could also find where EXTERN.h is located and add that to your shell by default, e.g. in your .bashrc or .zshrc file:
export CPATH=/System/Volumes/Data/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Perl/5.18/darwin-thread-multi-2level/CORE/
I'm trying to install program called OrthoMCL on MacOS X 10.6.8 Snow Leopard. For it's work it needs DBI module for Perl. On my machine I have two perl installations - prebuild 5.10.0 version on /usr/bin/perl (call it Perl1) and 5.12.3 MacPorts installation (call it Perl2) which I actually use.
Problem is that OrthoMCL is trying to work with /usr/bin/perl. If I try to install CPAN DBI and DBD::mysql modules from CPAN for Perl1 I have errors like:
lipo: can't open input file: /var/tmp//ccOBwzHU.out (No such file or directory)
make: *** [Perl.o] Error 2
External compilation with
/usr/bin/perl Makefile.PL
make
results the same error.
I can install DBI and DBD::mysql on Perl2, but OrthoMCL doesn't work with it.
Addition Perl2 modules pathways to PERL5LIB variable does error with attempt to work with Perl1:
Perl lib version (5.12.4) doesn't match executable version (v5.10.0) at /opt/local/lib/perl5/5.12.4/darwin-thread-multi-2level/Config.pm line 50.
So I have two questions:
Is there an idea how can I install DBI and DBD::mysql modules for Perl1.
Does anybody know how can I force OrthoMCL to work with Perl2?
Thanks!
Try sudo /usr/bin/perl Makefile.PL && make.
Regarding perl version, you need to install the modules for your second perl version too for it to work. I don't know of OrthoMCL at all, but I'd consult it's documentation regarding how it works together with perl.
On Mac OS X, I would strongly recommend never using the system perl at all, and instead using App::Perlbrew to install and use a perl in your home directory.
For more than a few years, OS X's perl has been broken in various ways that are nearly impossible to fix unless you are a guru. It's a rathole you don't want to go down.
Perl applications should not be hardcoding /usr/bin/perl on their first ("shebang") line: that is a bug. Replace it with /usr/bin/env perl, which will run whichever perl you've selected with perlbrew.
I use ActiveStates TCL version 8.6.0.0 for Windows x64.
In a script I call:
package require tcom
Tcom is included in the installation but I get the following error:
couldn't load libary "C:/TCL/lib/tcom/tcom.dll": Invalid argument while executing
"load C:/TCL/lib/tcom/tcom.dll"
("package ifneeded tcom 3.9" script)
invoked from within
"package require tcom"
Does anyone understand whats actually missing? C:/TCL/lib/tcom/tcom.dll is installed on my system, so what is the "invalid argument" ?
This appears to be a 32-bit/64-bit issue. You can't mix different bit-sizes within the same process† and you may well have installed a 64-bit build of ActiveTcl 8.6.0.0 under the belief that matching the size of the build and the system architecture is a good idea. Alas, this is not the case. ActiveTcl 8.6.0.0 for 64-bit Windows, for commercial reasons‡, requires an extra product key to access their 64-bit builds of external packages. But you've got the package installed anyway (perhaps from a previous installation of ActiveTcl?) and that appears to be a 32-bit build.
The misleading error from using the wrong size of binary library build is unfortunate (a relatively minor bug stemming from the subtle differences between Windows and POSIX and how Tcl handles the mapping between the two) but I'd bet that's it.
The easiest fix is to:
Uninstall all copies of ActiveTcl that you've got installed, then
Ensure that your C:\Tcl directory really is deleted, and then
Install the 32-bit build of ActiveTcl 8.6.0.0 (which works just fine on Win64-based systems like 64-bit Windows 7 and Windows 8). Once you've done that, you
Use teacup update to get a full set of packages installed and you should get Tcom working.
†Except on ARM with extra trickiness, which doesn't apply here.
‡I'm not going to try to justify them; it's their decision, not mine.
I have a solaris machine configuration: SunOS indevel07 5.10 Generic_147440-15 sun4v sparc sun4v. I am trying to install expect utility on this. expect utility requires tcl to be installed. I have tried to install that too, but i am getting errors. I have downloaded the tcl-8.5.12-sol10-sparc-local.gz and expect-5.45-sol10-sparc-local.gz from sunfreeware. I have unzipped them and tried to install them like pkgadd -d pkgname. I am getting errors like:
ERROR: attribute verification of </usr/local/man/man3/Tcl_Seek.3> failed
pathname does not exist
There are lots of errors like this. I tried to troubleshoot it by googling but could not find anything about it. I am stuck with my development because of this.
Try building Tcl/Tk and Expect from the source. Here is the instruction - How to Compile Tcl. Expect download - Obtaining Expect for UNIX. That worked for me on Solaris 10 and I did not hit any serious bumps.
For those who want to install tcl please refer this URL. it has got steps to do that. URL: http://www.wellho.net/mouth/1174_Installing-Tcl-and-Expect-on-Solaris-10-a-checklist.html
I compiled MySQL++ with no issues. When I launched some of the executables (resetdb.exe and simple1.exe) they suggest to run to test if the installation has been successful, the first error I got was that libmysql.dll was missing.
Adding its path to the PATH environment variable did not fix the problem, even after launching a new command prompt; I had to copy the DLL in the directory where MySQL++ executables are.
Now the DLL is found, but I get this error:
simple1.exe - Application error
The application was unable to start correctly (0xc000007b).
Click OK to close the application.
even launching from the command line, I get no more information than these.
Thank you for any help!
MySQL 5.5 -
MySQL++ 3.0.9 -
Windows 7 64 bits -
MINGW32 -
GCC 4.4.0
0xC000007B is a Windows error that means the executable is corrupted. It could refer either to simple1.exe or to one of the DLLs it's linking against.
Some reasons this could happen:
You're mixing toolchains in an incompatible way. In your case, you may have built simple1.exe using pieces built by MinGW GCC and pieces built by Visual C++. MinGW should be compatible with any pure C DLL built by Visual C++, including the MySQL C API DLL. However, you may have other pieces interfering. MinGW isn't compatible with VC++ at the C++ level, but then, it shouldn't have linked at all if this were your problem.
You didn't follow the MySQL C API import library build steps in README-MinGW.txt. You either missed a step, or skipped it entirely and are trying to use the import library that shipped with MySQL.
In your previous gyrations, you ended up with a corrupt object file, which got linked in. Try saying make clean all at the top level of MySQL++ to force a complete rebuild.
You're mixing versions of MySQL or MySQL++. If you have more than one version of each on the system, make sure you're consistent in their use. That is, build the C API import library from the same DLL you run the programs against, use exrun.bat to run the examples to ensure you're using the just-built version of the MySQL++ DLL instead of another you have in your PATH, etc.
Additionally, I note that you're using an older version of MySQL++. If you were on Linux, I could understand that as some distributions still ship with 3.0.9. But since you have to build MySQL++ from source with MinGW, I don't see why you're not using 3.1.0. Did you get a binary build from somewhere?
As for your PATH problem, did you restart the MinGW shell after doing this? PATH updates don't affect running programs; they keep the value they saw when they started.