MySQL server doesn't run via MAMP on mac OS - mysql

I upgraded my MAMP PRO 3.5.2 version to the 5th and MySQL start fails.
I killed mysqld processes via killall -9 mysqld, cleaned log files like ib_logfile* and tried manipulations with innodb recovery.
The log I've got looks like this:
2018-10-10T14:16:12.6NZ mysqld_safe Logging to '/Applications/MAMP/logs/mysql_error.log'.
2018-10-10T14:16:12.6NZ mysqld_safe Starting mysqld daemon with databases from /Library/Application Support/appsolute/MAMP PRO/db/mysql57
2018-10-10T14:16:13.043096Z 0 [Warning] Insecure configuration for --secure-file-priv: Current value does not restrict location of generated files. Consider setting it to a valid, non-empty path.
2018-10-10T14:16:13.051110Z 0 [Note] /Applications/MAMP/Library/bin/mysqld (mysqld 5.7.23) starting as process 5538 ...
2018-10-10T14:16:13.064223Z 0 [Warning] Setting lower_case_table_names=2 because file system for /Library/Application Support/appsolute/MAMP PRO/db/mysql57/ is case insensitive
2018-10-10T14:16:13.074890Z 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2018-10-10T14:16:13.074926Z 0 [Note] InnoDB: Uses event mutexes
2018-10-10T14:16:13.074936Z 0 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2018-10-10T14:16:13.074943Z 0 [Note] InnoDB: Compressed tables use zlib 1.2.3
2018-10-10T14:16:13.074972Z 0 [Note] InnoDB: Adjusting innodb_buffer_pool_instances from 8 to 1 since innodb_buffer_pool_size is less than 1024 MiB
2018-10-10T14:16:13.079521Z 0 [Note] InnoDB: Number of pools: 1
2018-10-10T14:16:13.084840Z 0 [Note] InnoDB: Using CPU crc32 instructions
2018-10-10T14:16:13.089357Z 0 [Note] InnoDB: Initializing buffer pool, total size = 128M, instances = 1, chunk size = 128M
2018-10-10T14:16:13.114376Z 0 [Note] InnoDB: Completed initialization of buffer pool
2018-10-10T14:16:13.140491Z 0 [Note] InnoDB: Highest supported file format is Barracuda.
2018-10-10T14:16:13.145746Z 0 [ERROR] InnoDB: Trying to access page number 527111 in space 0, space name innodb_system, which is outside the tablespace bounds. Byte offset 0, len 16384, i/o type read. If you get this error at mysqld startup, please check that your my.cnf matches the ibdata files that you have in the MySQL server.
2018-10-10T14:16:13.145772Z 0 [ERROR] InnoDB: Server exits.
2018-10-10T14:16:13.6NZ mysqld_safe mysqld from pid file /Applications/MAMP/tmp/mysql/mysql.pid ended
Would appreciate any hint which direction to go as I start to consider to uninstall and reinstall of MAMP which means I will lose few local DB installations.
Thanks!

So the issue was solved and MySQL runs locally via MAMP 5.1.
While figuring out what was going wrong in the my.cnf following settings were applied:
increased innodb_buffer_pool_size value: innodb_buffer_pool_size = 1024M
force recovery mode was on innodb_force_recovery = 1
That lead to the error that mentioned in the question:
[ERROR] InnoDB: Trying to access page number 527111 in space 0, space name innodb_system, which is outside the tablespace bounds. Byte offset 0, len 16384, i/o type read. If you get this error at mysqld startup, please check that your my.cnf matches the ibdata files that you have in the MySQL server.
At this point default settings for the ibdata dir and path were uncommented inside of my.cnf:
innodb_data_home_dir = "/Library/Application Support/appsolute/MAMP PRO/db/mysql57"
innodb_data_file_path = ibdata1:10M:autoextend
innodb_log_group_home_dir = "/Library/Application Support/appsolute/MAMP PRO/db/mysql57"
Error log was reported on access limits (don't have an exact sentence at front of me), was lost a bit here, and as a guess measure, I extended rights for the folder /Library/Application Support/appsolute/MAMP PRO/db/mysql57 to my current user.
That didn't change the log. The error about a wrong path to the ibdata was still there.
In the end the renaming of the folder mysql (where was the full version of ibdata (~40Gb)) to mysql57 helped.
There was following folder structure in /Library/Application Support/appsolute/MAMP PRO/db/ after the installation of MAMP 5.1:
-- mysql
-- mysql56_TIMESTAMP
-- mysql57
with the same structure of files, but a closer comparison of the content showed that the full version of the file inside of mysql, so renamed it, and removed all folders after tests that MAMP works correctly without them.
So now I have only one mysql folder inside of /Library/Application Support/appsolute/MAMP PRO/db/. The settings inside of my.cnf that I customized in the process rolled back.

Related

Unable to start MYSQL service after data directory change

This is going to be a long one. Please read.
I created an new Azure Ubuntu 18.04 with a 1 TB drive. Setup went fine. Then I installed MySql server using this link. Everything went fine. I was able to start up the mysql with no issues.
My next step was to change the data directory path. I followed this guide. The only difference I changed from the guide was the sudo rsync -av /var/lib/mysql /mnt/MYSQLDATA. When I ran that command, it didn't do anything. Nothing copied over. I replace it with cp * -r /mnt/MYSQLDATA to copy everything over.
I followed the guide to the end. I changed the cnf for mysql /etc/mysql/mysql.conf.d/mysqld.cnf to read:
datadir = /mnt/MYSQLDATA
Next, I changed the alias also sudo nano /etc/apparmor.d/tunables/alias:
`# alias /var/lib/mysql/ -> /mnt/MYSQLDATA/`,
I figured I had to change the [/etc/apparmor.d/usr.sbin.mysqld][3] config. This is the code I used:
# Allow data dir access
/mnt/MYSQLDATA/ r,
/mnt/MYSQLDATA** rwk,
Restarted the apparmor. Everything looked like it was set. I even went to make sure that mysql was the owner of the folder path, so I can chown -R mysql:mysql /mnt/MYSQLDATA. Now it was time to restart the service and it doesnt restart. I keep getting
Job for mysql.service failed because the control process exited with an error code. See "systemctl status mysql.service" and "journalctl -xe" for details.
2022-07-18T23:01:30.236755Z 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see documentation for more details).
2022-07-18T23:01:30.236994Z 0 [Warning] Can't create test file /mnt/MYSQLDATA/LEGMYSQLR.lower-test
2022-07-18T23:01:30.237046Z 0 [Note] /usr/sbin/mysqld (mysqld 5.7.38-0ubuntu0.18.04.1) starting as process 7569 ...
2022-07-18T23:01:30.240273Z 0 [Warning] Can't create test file /mnt/MYSQLDATA/LEGMYSQLR.lower-test
2022-07-18T23:01:30.240311Z 0 [Warning] Can't create test file /mnt/MYSQLDATA/LEGMYSQLR.lower-test
2022-07-18T23:01:30.244072Z 0 [Note] InnoDB: PUNCH HOLE support available
2022-07-18T23:01:30.244101Z 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2022-07-18T23:01:30.244106Z 0 [Note] InnoDB: Uses event mutexes
2022-07-18T23:01:30.244110Z 0 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2022-07-18T23:01:30.244131Z 0 [Note] InnoDB: Compressed tables use zlib 1.2.11
2022-07-18T23:01:30.244135Z 0 [Note] InnoDB: Using Linux native AIO
2022-07-18T23:01:30.244437Z 0 [Note] InnoDB: Number of pools: 1
2022-07-18T23:01:30.244573Z 0 [Note] InnoDB: Using CPU crc32 instructions
2022-07-18T23:01:30.247391Z 0 [Note] InnoDB: Initializing buffer pool, total size = 128M, instances = 1, chunk size = 128M
2022-07-18T23:01:30.255749Z 0 [Note] InnoDB: Completed initialization of buffer pool
2022-07-18T23:01:30.258357Z 0 [Note] InnoDB: If the mysqld execution user is authorized, page cleaner thread priority can be changed. See the man page of setpriority().
2022-07-18T23:01:30.268405Z 0 [ERROR] InnoDB: The innodb_system data file 'ibdata1' must be writable
2022-07-18T23:01:30.268428Z 0 [ERROR] InnoDB: The innodb_system data file 'ibdata1' must be writable
2022-07-18T23:01:30.268444Z 0 [ERROR] InnoDB: Plugin initialization aborted with error Generic error
2022-07-18T23:01:30.869299Z 0 [ERROR] Plugin 'InnoDB' init function returned error.
2022-07-18T23:01:30.869354Z 0 [ERROR] Plugin 'InnoDB' registration as a STORAGE ENGINE failed.
2022-07-18T23:01:30.869360Z 0 [ERROR] Failed to initialize builtin plugins.
2022-07-18T23:01:30.869364Z 0 [ERROR] Aborting
2022-07-18T23:01:30.869421Z 0 [Note] Binlog end
2022-07-18T23:01:30.869518Z 0 [Note] Shutting down plugin 'CSV'
2022-07-18T23:01:30.869895Z 0 [Note] /usr/sbin/mysqld: Shutdown complete
I have no idea what I did wrong and where it went wrong. In the journalctl -xe it just shows mysql.services: control process exited, code=exited status=1 or mysql.services: start request repeated too quickly. I am pulling my hair out trying to figure out what went wrong. Please help.
I was also running into similar problem.
The main problem was /mnt/mysqldisk/mysql the mysqldisk was created by my user so in the /var/log/syslog it was complaining it could not write to mysql directory.
I changed the permissions to mysql:mysql using shown on the directory. that should solve your problem
The easiest solution I found is using softlink
This is the final solution I did and you don't need to go through any complicated steps
-stop the mysql server
-sudo cp -a /var/lib/mysql /mnt/mysqldisk/mysql
-sudo mv /var/lib/mysql /var/lib/mysql.bak
` #create a soft link that points to the new mount mysql directory
sudo ln -s /mnt/mysqldisk/mysql/ /var/lib/mysql
Start the mysql service and check it comes up.
you do not need to do any change to /etc/mysql/mysql.conf.d/mysqld.cnf or any Alias etc.
This since to the mysql it looks as if mysql is still at the same place and the original config will still be able to access the new location from the soft link.
This is on ubuntu 18.04 LTS

MySQL57 service on Local Computer started and then stopped

I'm having a problem with mySql. It is stopped and when I try to start it, I get the following: "MySQL57 service on Local Computer started and then stopped." as you can see in the following image:
My server log is the following:
2017-04-05T10:04:58.085384Z 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see documentation for more details).
2017-04-05T10:04:58.085384Z 0 [Warning] 'NO_ZERO_DATE', 'NO_ZERO_IN_DATE' and 'ERROR_FOR_DIVISION_BY_ZERO' sql modes should be used with strict mode. They will be merged with strict mode in a future release.
2017-04-05T10:04:58.087363Z 0 [Note] C:\Program Files\MySQL\MySQL Server 5.7\bin\mysqld.exe (mysqld 5.7.9-log) starting as process 7852 ...
2017-04-05T10:04:58.108397Z 0 [Note] InnoDB: Mutexes and rw_locks use Windows interlocked functions
2017-04-05T10:04:58.109398Z 0 [Note] InnoDB: Uses event mutexes
2017-04-05T10:04:58.109398Z 0 [Note] InnoDB: _mm_lfence() and _mm_sfence() are used for memory barrier
2017-04-05T10:04:58.110399Z 0 [Note] InnoDB: Compressed tables use zlib 1.2.3
2017-04-05T10:04:58.110399Z 0 [Note] InnoDB: Adjusting innodb_buffer_pool_instances from 8 to 1 since innodb_buffer_pool_size is less than 1024 MiB
2017-04-05T10:04:58.116403Z 0 [Note] InnoDB: Number of pools: 1
2017-04-05T10:04:58.116403Z 0 [Note] InnoDB: Not using CPU crc32 instructions
2017-04-05T10:04:58.156434Z 0 [Note] InnoDB: Initializing buffer pool, total size = 8M, instances = 1, chunk size = 8M
2017-04-05T10:04:58.158435Z 0 [Note] InnoDB: Completed initialization of buffer pool
2017-04-05T10:04:58.200443Z 0 [Note] InnoDB: Highest supported file format is Barracuda.
2017-04-05T10:04:58.207479Z 0 [Note] InnoDB: Log scan progressed past the checkpoint lsn 43061044961
2017-04-05T10:04:58.208477Z 0 [Note] InnoDB: Doing recovery: scanned up to log sequence number 43061045173
2017-04-05T10:04:58.209476Z 0 [ERROR] InnoDB: Ignoring the redo log due to missing MLOG_CHECKPOINT between the checkpoint 43061044961 and the end 43061045173.
2017-04-05T10:04:58.210477Z 0 [ERROR] InnoDB: Plugin initialization aborted with error Generic error
2017-04-05T10:04:58.514809Z 0 [ERROR] Plugin 'InnoDB' init function returned error.
2017-04-05T10:04:58.515786Z 0 [ERROR] Plugin 'InnoDB' registration as a STORAGE ENGINE failed.
2017-04-05T10:04:58.515786Z 0 [ERROR] Failed to initialize plugins.
2017-04-05T10:04:58.516785Z 0 [ERROR] Aborting
2017-04-05T10:04:58.517786Z 0 [Note] Binlog end
2017-04-05T10:04:58.517786Z 0 [Note] Shutting down plugin 'CSV'
2017-04-05T10:04:58.519788Z 0 [Note] C:\Program Files\MySQL\MySQL Server 5.7\bin\mysqld.exe: Shutdown complete
I have tried, some options like turn off innodb_log_checksums via command line or set innodb_log_checksums = 0 in configure file. and then restart, or this one in stackoverflow but It is still stopped.
What can I do? Can some one help me?
Thank you
Run the command from the command prompt; it's the only effective way to see the error message that services return that you will not see using the built-in Windows Services program.
Either double-click the service or right-click to click on Properties.
Click on the Path to executable.
Press the Home key and then hold Shift while pressing the End key to highlight the entire command.
Hold the Control key and then press C to copy.
Run the command prompt (usually Start -> Run -> cmd -> Okay) or make a new shortcut and just type cmd for the command.
In the commend prompt right-click.
Left-click on paste.
Press Enter to run the command.
Research the problem with your preferred search engine, use "quote operators" around the error message to limit results if there are too many unrelated results.
Just had this problem, way i solved it was:
In the command prompt go to mysql location mysql\bin (use cd .. to go back one folder or cd name_of_folder to access it)
In this location, type mysqld --initialize
here what I did and it worked. MySQL keep backup of your my.ini files in C:\ProgramData\MySQL\MySQL Server 8.0 directory in windows, rename a recent backup of *.ini to my.ini

Error Starting MySQL after Crash

I was merrily installing wordpress with MAMP pro when my Mac crashed. Now I cannot start MySql. Most stuff I read online tells me to throw some terminal commands at it, trying to kill the process.
killall -9 mysqld
But terminal report "No matching processes belonging to you were found"
So I have had a look in the log and can see this from the time of the first restart attempt after the crash
150506 21:11:33 mysqld_safe Starting mysqld daemon with databases from /Library/Application Support/appsolute/MAMP PRO/db/mysql
150506 21:11:33 [Warning] Using unique option prefix key_buffer instead of key_buffer_size is deprecated and will be removed in a future release. Please use the full name instead.
150506 21:11:33 [Warning] Setting lower_case_table_names=2 because file system for /Library/Application Support/appsolute/MAMP PRO/db/mysql/ is case insensitive
150506 21:11:33 [Note] Plugin 'FEDERATED' is disabled.
150506 21:11:33 InnoDB: The InnoDB memory heap is disabled
150506 21:11:33 InnoDB: Mutexes and rw_locks use GCC atomic builtins
150506 21:11:33 InnoDB: Compressed tables use zlib 1.2.3
150506 21:11:33 InnoDB: Initializing buffer pool, size = 128.0M
150506 21:11:33 InnoDB: Completed initialization of buffer pool
InnoDB: The first specified data file ./ibdata1 did not exist:
InnoDB: a new database to be created!
150506 21:11:33 InnoDB: Setting file ./ibdata1 size to 10 MB
InnoDB: Database physically writes the file full: wait...
150506 21:11:33 InnoDB: Log file ./ib_logfile0 did not exist: new to be created
InnoDB: Setting log file ./ib_logfile0 size to 5 MB
InnoDB: Database physically writes the file full: wait...
150506 21:11:33 InnoDB: Log file ./ib_logfile1 did not exist: new to be created
InnoDB: Setting log file ./ib_logfile1 size to 5 MB
InnoDB: Database physically writes the file full: wait...
InnoDB: Doublewrite buffer not found: creating new
InnoDB: Doublewrite buffer created
InnoDB: 127 rollback segment(s) active.
InnoDB: Creating foreign key constraint system tables
InnoDB: Foreign key constraint system tables created
150506 21:11:34 InnoDB: Waiting for the background threads to start
150506 21:11:35 InnoDB: 5.5.42 started; log sequence number 0
150506 21:11:35 [Note] Event Scheduler: Loaded 0 events
150506 21:11:35 [Note] /Applications/MAMP/Library/bin/mysqld: ready for connections.
Version: '5.5.42' socket: '/Applications/MAMP/tmp/mysql/mysql.sock' port: 0 Source distribution
150506 21:16:44 [Note] /Applications/MAMP/Library/bin/mysqld: Normal shutdown
So Table Space size error.. I am very much a front end guy and have no idea where to begin with this...??
Help please, I really can't afford to loose the last week of work.
Thanks you
As you pointed out InnoDB tablespace is corrupt, so InnoDB fails to start.
InnoDB can tolerate some errors if you start it with option innodb_force_recovery. Try values from 1 to 6 until MySQL starts.
If you're lucky and MySQL starts with innodb_force_recovery then dump all tables into an sql file with mysqldump and re-create MySQL database from scratch. I.e. move existing files to some safe place, start mysql_install_db, change file permissions and start MySQL. Then load the database back.
If you're less lucky and MySQL doesn't start with innodb_force_recovery=6 then check how to Recover Corrupt MySQL Database .
And to avoid this experience in future use XtraBackup for Mac OS to take backups.
Please see her:
MAMP PRO crashes; MySQL will not start on reboot
Thanks for the heads up with Xtrabackup for MacOS, one to keep an eye on that.

Getting error "Plugin 'InnoDB' registration as a STORAGE ENGINE failed" when starting MySQL

I found many similar question on Stackoverflow but didn't get the exact error solution.
My issue is when starting MySQL service on one of the Dedicated Centos 6.5 machine, I am getting error :
141018 05:13:46 mysqld_safe Starting mysqld daemon with databases from /var/lib/mysql
141018 5:13:47 [Warning] Can't create test file /var/lib/mysql/ip-184-168-73-83.lower-test
141018 5:13:47 [Warning] Can't create test file /var/lib/mysql/ip-184-168-73-83.lower-test
/usr/libexec/mysqld: Can't create/write to file '/tmp/ibkTWnhE' (Errcode: 28)
141018 5:13:48 InnoDB: Error: unable to create temporary file; errno: 28
141018 5:13:48 [ERROR] Plugin 'InnoDB' init function returned error.
141018 5:13:48 [ERROR] Plugin 'InnoDB' registration as a STORAGE ENGINE failed.
141018 5:13:48 [ERROR] Can't start server : Bind on unix socket: No space left on device
141018 5:13:48 [ERROR] Do you already have another mysqld server running on socket: /var/lib/mysql/mysql.sock ?
141018 5:13:48 [ERROR] Aborting
141018 5:13:48 [Note] /usr/libexec/mysqld: Shutdown complete
141018 05:13:48 mysqld_safe mysqld from pid file /var/run/mysqld/mysqld.pid ended
Here are free command status:
free -m
total used free shared buffers cached
Mem: 3743 3631 111 0 2705 21
-/+ buffers/cache: 905 2838
Swap: 2047 0 2047
This error also happens when your Database data is corrupt. You may fix this issue by moving your Db data files (ib_logfile0 and ib_logfile1) mentioned below to another location. ib_logfile0 and ib_logfile1 are system tablespace for the InnoDB infrastructure. These files contains several classes for information vital for InnoDB. You may read about these files here.
Before following below steps please keep a copy of files (ib_logfile0 and ib_logfile1) so you may restore your data in case it is lost:
Follow below steps:
Login to server via SSH with root access.
Navigate to /var/lib/mysql.
If you see files like, ib_logfile0 and ib_logfile1, rename or move them to some other folder.
Stop and start the MySQL service by running sudo service mysql stop and sudo service mysql start
These files will be recreated after you restart the server and the issue will be fixed hopefully.
Thanks
I have the same problems, this my solution:
Add more RAM to the server
Decrease the value of innodb-buffer-pool size in the config file:
sudo nano /etc/mysql/my.cnf
innodb_buffer_pool_size = 10M
After save /etc/mysql/my.cnf.
Restart mysql service:
sudo service mysql restart
exit
This is frequently occurred issue. Do following -
delete/move out these "aria_log_contro, ib_logfile0, ib_logfile1, ib_data1" files from location "..\xampp\mysql\data" and also from "..\xampp\mysql\backup".
stop and start apache server and mysql form xampp control panel
This should fix the issue; actually it worked for me.
NOTE: THIS IS GOING TO RESET THE DB IN MANY CASES BE VERY CAREFUL
Changing the values of innodb_buffer_pool_size and innodb_log_file_size didn't work for me.
Moving ib_logfile0 and ib_logfile1 files didn't help either.
What did help was:
> service mysql stop
Edit my.cfg and add innodb_force_recovery = 1
> service mysql start
> service mysql stop
Comment the innodb_force_recovery = 1 line.
> service mysql start
And voilá. (I should note that I have no idea if this involves any data loss or not)
Although late but putting answer here so that solution that helped me can help someone. I took following steps:
Added more RAM to sever
Decrease the value of innodb-buffer-pool size
Set innodb_log_file_size
Restart mysql
Example of addition to my.cnf:
innodb_buffer_pool_size = 10M
innodb_log_file_size = 1000M
After few unsuccess hours, i checked the disk space... and was full...
I was getting below mysql error log:-
[Note] Plugin 'FEDERATED' is disabled.
InnoDB: The InnoDB memory heap is disabled
InnoDB: Mutexes and rw_locks use GCC atomic builtins
InnoDB: Compressed tables use zlib 1.2.3
InnoDB: Using Linux native AIO
InnoDB: Initializing buffer pool, size = 128.0M
InnoDB: mmap(137363456 bytes) failed; errno 12
InnoDB: Completed initialization of buffer pool
InnoDB: Fatal error: cannot allocate memory for the buffer pool
[ERROR] Plugin 'InnoDB' init function returned error.
[ERROR] Plugin 'InnoDB' registration as a STORAGE ENGINE failed.
[ERROR] Unknown/unsupported storage engine: InnoDB
[ERROR] Aborting
[Note] /usr/libexec/mysqld: Shutdown complete
I found out there are two solutions which are:-
1)Set innodb_log_file_size equal to the actual size of the existing InnoDB log files.
To see what size of innoDB log allocated, login mysql and enter following cmd:-
SHOW GLOBAL VARIABLES LIKE 'innodb_log_file_size';
Expected result example:- 5242880
After that, insert that value in my.cnf:-
vi /etc/my.cnf
innodb_log_file_size =5242880
2)Rename or move both the ./ib_logfile0 and ./ib_logfile1 files, and then start the MySQL server.This normally will be located at /var/lib/mysql. After start mysql, it create new innoDB log file and restore possible half-written data from the file of .ibd.
The expexted mysql log example:-
InnoDB: Database physically writes the file full: wait...
161216 9:58:54 InnoDB: Log file ./ib_logfile1 did not exist: new to be created
InnoDB: Setting log file ./ib_logfile1 size to 5 MB
InnoDB: Database physically writes the file full: wait...
161216 9:58:54 InnoDB: highest supported file format is Barracuda.
InnoDB: The log sequence number in ibdata files does not match
InnoDB: the log sequence number in the ib_logfiles!
161216 9:58:54 InnoDB: Database was not shut down normally!
InnoDB: Starting crash recovery.
InnoDB: Reading tablespace information from the .ibd files...
InnoDB: Restoring possible half-written data pages from the doublewrite
InnoDB: buffer...
161216 9:58:54 InnoDB: Waiting for the background threads to start
161216 9:58:55 InnoDB: 5.5.50 started; log sequence number 1589772
161216 9:58:55 [Note] Server hostname (bind-address): '0.0.0.0'; port: 3306
161216 9:58:55 [Note] - '0.0.0.0' resolves to '0.0.0.0';
161216 9:58:55 [Note] Server socket created on IP: '0.0.0.0'.
161216 9:58:55 [Note] Event Scheduler: Loaded 0 events
161216 9:58:55 [Note] /usr/libexec/mysqld: ready for connections.
Version: '5.5.50' socket: '/var/lib/mysql/mysql.sock' port: 3306 MySQL Community Server (GPL) by Remi
References:-
JUSTIN KULESZA (2011). MySQL: Failed Registration of InnoDB as a Storage Engine. Available at: https://spin.atomicobject.com/2011/05/09/mysql-failed-registration-of-innodb-as-a-storage-engine/.
RolandoMySQLDBA (2014). MySQL my.cnf: innodb_log_file_size is missing. Available at: https://dba.stackexchange.com/questions/75688/mysql-my-cnf-innodb-log-file-size-is-missing/158325#158325
Changing the Number or Size of InnoDB Redo Log Files. Available at: http://dev.mysql.com/doc/refman/5.7/en/innodb-data-log-reconfiguration.html
Nothing was working with reinstalls, removes, and others (I had no data to keep, not a fix; more of a data destruction process, big caveat there):
1005 mysql_install_db
1007 /usr/bin/mysqld_safe --datadir='/var/lib/mysql
1008 /usr/bin/mysqld_safe --datadir='/var/lib/mysql' (^z)
1009 bg
1010 mysql
1011 mysql_secure_installation
1012 mysql
1013 mysql -p
And viola; actually usable database.
for me the solution was to change the config to add
innodb_use_native_aio = 0
in mysql config
Just move this log file (ib_logfile0) to some other place for safer side and start the mysql services it worked for me.
I also met the same issue when restore a backup set made via innobackupex to a new instance. Finally ,the root cause is innodb_log_file_size doesn't match original instance that take the backup, and fix steps by steps like below:
Get innodb_log_file_size value from oragin instance via below command:
mysql uroot -ppasswd -NBe "show global variables like 'innodb_log_file_size';"
Modify the /etc/my.cnf of new instance with last get value:
vim /etc/my.cnf
Restart mysqld via :
systemctl restart mysqld

Log sequence number in ibdata files does not match

Everytime when I start my Mysql database I see this in the error_log:
131015 12:07:06 [Note] Plugin 'FEDERATED' is disabled. 131015 12:07:06
InnoDB: The InnoDB memory heap is disabled 131015 12:07:06 InnoDB:
Mutexes and rw_locks use Windows interlocked functions 131015 12:07:06
InnoDB: Compressed tables use zlib 1.2.3 131015 12:07:06 InnoDB:
Initializing buffer pool, size = 16.0M 131015 12:07:06 InnoDB:
Completed initialization of buffer pool 131015 12:07:06 InnoDB:
highest supported file format is Barracuda. InnoDB: The log sequence
number in ibdata files does not match InnoDB: the log sequence number
in the ib_logfiles! 131015 12:07:06 InnoDB: Database was not shut
down normally! InnoDB: Starting crash recovery. InnoDB: Reading
tablespace information from the .ibd files... InnoDB: Restoring
possible half-written data pages from the doublewrite InnoDB:
buffer... 131015 12:07:07 InnoDB: Waiting for the background threads
to start 131015 12:07:08 InnoDB: 5.5.32 started; log sequence number
1595695 131015 12:07:08 [Note] Server hostname (bind-address):
'0.0.0.0'; port: 3306 131015 12:07:08 [Note] - '0.0.0.0' resolves to
'0.0.0.0'; 131015 12:07:08 [Note] Server socket created on IP:
'0.0.0.0'.
I've tried mysqlcheck -u root -p --repair -A in order to repair the database. This reports that all tables are a-ok.
I've also tried setting innodb_force_recovery to 4
I've tried SET GLOBAL innodb_fast_shutdown = 1; and shutdown the DB.
None of these make the errors go away.
How do I repair the InnoDB tables in my database?
I resolve my problem by removing some files in "Xampp\mysql\data":
ib_logfile0
ib_logfile1
ibdata1
** Be Sure to Backup your DBs by :
[mysqld]
innodb_force_recovery = 2
(This command will help you to start Mysql in Read-only mode.)
LSN (log sequence number) may not match if MySQL crashed.
But if the crash recovery process finished you should be fine. If any transaction modifies data in a page, new LSN will be written to the page header.
I would investigate why MySQL crashes every time you restart it. To my knowledge /etc/init.d/mysql stop may take long time, so if you restart the server OS may just kill mysqld. In that case you should manually stop MySQL before reboot the whole server.
I had the same issue.
In my case, I was running MySQL on windows via XAMPP and using the XAMPP controls to start/stop the server.
It appears the XAMPP shutdown control was killing the MySQL server, rather than requesting a shutdown.
Solution
(optional) In my.ini set innodb_fast_shutdown=0 to configure mysqld to perform a full showdown
Create a .bat file, with contents mysqladmin --user=[user] --password=[password] shutdown replacing [user] and [password] with your root user details
When you wish to shutdown the MySQL server, just run the .bat file. The shutdown is detected by XAMPP control panel so you can restart using the XAMPP control.
If you now take a look at your logs, you'll see the errors have gone away
Or better yet, just install mysql as a windows service.
References:
innodb_fast_shutdown http://dev.mysql.com/doc/refman/5.7/en/innodb-parameters.html#sysvar_innodb_fast_shutdown
mysqladmin shutdown - http://dev.mysql.com/doc/refman/5.7/en/server-shutdown.html