Best way to initialize DB script while building docker image - mysql

I am building a docker machine using the image "mysql". I have some setup script to run for the first time the machine is built. This setup script will create some database and dabase users with specified permmissions.
Following are the minimized version of my files..
pcdb1.entrypoint.sh
#!/bin/sh
mysql -uroot -p'pass123' -e 'show databases MYENTRYDB;'
Dockerfile
FROM mysql:5.7
COPY ./pcdb1.entrypoint.sh /
ENTRYPOINT ["/pcdb1.entrypoint.sh"];
I am getting the following error in the log
ERROR 2002 (HY000): Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2)
pcdb1 exited with code 1
What I understood is, my script is trying to run before mysql is started. But I am not sure how to do it properly. Can I get a suggestion?

EDIT: 20181007
I have found the way you mentioned in question--initialize DB while building docker image. But with a little difference, the way I found seems like initializing DB while running a container from image, although the initializing script was specified while building the image.
According to the official information about mysql:5.7, there is paragraph named "Initializing a fresh instance". We could just add a initializing script into the directory /docker-entrypoint-initdb.d, the default ENTRYPOINT and CMD of image mysql:5.7 would execute it after database start-up.
For example:
FROM mysql:5.7
COPY init-database.sql /docker-entrypoint-initdb.d/
content of init-database.sql:
create database light;
create user 'light'#'%' identified by 'abc123';
grant all privileges on light.* to 'light'#'%' identified by 'abc123';
grant all privileges on light.* to 'light'#'localhost' identified by 'abc123';
Build new image:
docker build -t light/mysql:5.7 .
Run a container:
docker run -tid --name mysql -p 3306:3306 -e MYSQL_ROOT_PASSWORD='abc123' light/mysql:5.7
Examine initialization:
docker run -ti mysql /bin/bash
root#25e73d40c4ff:/# mysql -uroot -p
Enter password: (abc123)
Welcome to the MySQL monitor.
Type 'help;' or '\h' for help. Type '\c' to clear the current input statement.
mysql> show databases;
All work well.
Former answer below.
How to start mysql damon in container?
First of all, you are right on "trying to run before mysql is started" part. But still, there is a missing on "how MySQL starts exactly". If you execute docker history mysql:5.7 --no-trunc, you could see three important records among output like below:
/bin/sh -c #(nop) CMD ["mysqld"]
/bin/sh -c #(nop) ENTRYPOINT ["docker-entrypoint.sh"]
/bin/sh -c ln -s usr/local/bin/docker-entrypoint.sh /entrypoint.sh
So far we should know when we start a mysql container with command below, the exact initial command in container is docker-entrypoint.sh mysqld.
docker run -tid -e MYSQL_ROOT_PASSWORD='abc123' mysql:5.7
How to initiate mysql in container?
Secondly, let's now have a check on docker-entrypoint.sh script.
There is a specific line like below, just at roughly middle position of this script, which means to start mysql daemon.
mysql=( mysql --protocol=socket -uroot -hlocalhost --socket="${SOCKET}" )
After starting mysql, we could see lots of initiating statements in docker-entrypoint.sh script. Such as creating root user with password or not, granting privileges to root, creating database declared by users with MYSQL_DATABASE env and so on.
Now here are solutions offered for you.
Self-defining the docker-entrypoint.sh script.
In this way, you could whatever you want which is legal in mysql.
Get the whole entrypoint.sh script on your host.
Add your self-definition of mysql in the script, make your
self-defining content at the bottom of this script. I assume you
don't want to mess it with original content.
Build a new mysql image for your own with command and Dockerfile below.
command: docker build -t mysql:self .
Dockerfile:
FROM mysql:5.7
COPY /path/to/your-entrypoint.sh /
ENTRYPOINT ["/your-entrypoint.sh"]
CMD ["mysqld"]
If your don't want a new image, there is another way to change
ENTRYPOINT when you run a container. But still, you should make your own script available in container.
docker run -tid -v /path/to/your-entrypoint.sh:/entrypoint.sh -p 3306:3306 -e MYSQL_ROOT_PASSWORD='abc123' mysql:5.7
Using default ENVs provided by mysql:5.7
In this way, there is a limit, especially on "specified permmissions" you mentioned.
The ENVs you need are: MYSQL_DATABASE, MYSQL_USER, MYSQL_PASSWORD.
The command should like this:
docker run -tid -e MYSQL_ROOT_PASSWORD='abc123' -e MYSQL_DATABASE='apps' -e MYSQL_USER='light' -e MYSQL_PASSWORD='abc123' mysql:5.7
This means that the database apps and user light will be created automatically, and the user light will be granted superuser permissions for the database apps.
More reference here on hub.docker.com.

Related

Exist a way to create a mysql docker image with volume attached and also executing sql script?

I am trying to use a MySQL image on docker, attaching a volume, furthermore I would like to add a sql script in order to create a table if not present yet.
So if the container is used in another machine the table will be Always present.
My command :
docker run -d -p 3306:3306 --name my-mysql --network sma -v /scripts:/docker-entrypoint-initdb.d/ -v /myvolume/:/var/lib/mysql -e MYSQL_ROOT_PASSWORD=password -e MYSQL_DATABASE=myDB mysql
My situation:
I am able to attach the volume with -v option (/myvolume/:/var/lib/mysql) during the run, and actually I am also able to insert the script in the init directory ( /docker-entrypoint-initdb.d/ ) but if I do these two things, only the volume attaching will work.
I guess it is something like the script is executed (because it is placed in the directory) but then the MySQL is overwritten by the volume attaching, so the only thing I am seeing is what is present in myvolume.
There is some way that makes that work?
I resolved using it in a swarm from a docker-compose with docker stack deploy -c docker-compose.yml swarm_name.
In the service definition of the docker-compose I added the command line in order to force it to execute the init script.
command: --init-file /docker-entrypoint-initdb.d/initDb.sql

Docker mysql container not creating user with password when specified with database

I have a usecase where i need to run mysql on a container and link it to another container. I also have my db files data in my host location which is mounted as a volume on to the database container... The condition is to run the container not as root but as a different user with all privileges.
The db is there is in the mounted volume.
I ran the following command:
docker run -d -v ~/testdata:/var/lib/mysql -e MYSQL_DATABASE=Testdata_DB -e MYSQL_USER=testdata -e MYSQL_PASSWORD=mypasswordhere -p 3306:3306 --name=testdata_db mysql
The above command will start the container but i am not able to see the user with the password when i bash into the running container. Only the mysql is running
docker exec -it testdata_db bash
Kindly let me know where i am going wrong. I followed the documentation under the docker official repo link.
I solved it by creating a init.sql with the required sql commands to create user , tables which it loaded from my host to the container under docker-entrypoint-initdb.d/ and set the env varibles as required. This made mysql instance load as a fresh instance and loaded all the required tables and data.
The final command is:
docker run --name testdata_db -p 3306:3306 -e "MYSQL_ROOT_PASSWORD= " -e "MYSQL_USER=test" -e "MYSQL_PASSWORD=mypass" -e "MYSQL_DATABASE=mysql" -v ~/mysql/db/:/var/lib/mysql/ -v ~/mysql/init/:/docker-entrypoint-initdb.d/ -d mysql

Run mysql script through docker?

Hi there,
I'm trying to create a docker container that will run a mysql script which generates a database and then table. My Dockerfile looks like this:
FROM mysql:latest
WORKDIR /
ADD . /
EXPOSE 3306
CMD mysql -u "root" -proot < "schema.sql"
I create the image through this:
docker build -t database .
And then I run it through this:
docker run -d -p 3306:3306 database
At this point the script should be run- however instead I just get this random line in the terminal:
0b2503b42482a4fa840351925845392e1abdf6022b23447187ff49ed4f0fa05b
Grateful for your help!
you are getting 0b2503b42482a4fa840351925845392e1abdf6022b23447187ff49ed4f0fa05b because of the option "-d" in docker run -d -p 3306:3306 database which indicates that the container will be running in the background. You can remove it if you dont want that.
For more info about this please check this link: Docker run command
The container should be running though.
Check the command Docker ps that will show you infos about running containers.
Hope this helps!
don't worry, this is 0b2503b42482a4fa840351925845392e1abdf6022b23447187ff49ed4f0fa05b ID from container.
You can use id to stop or check status or collect information of container. if you want check your command is work or not, you can run with this command docker run -it database bash or docker run -it database sh
Hope this helps.
Best Regards
as you are overriding CMD entry command in docker file, you would need to start mysqld service explicitly
CMD [mysqld, mysql -u "root" -proot < "schema.sql"]

How to add a startup script to a mysql docker container?

I started a docker container with mysql.
Actually i want to create a new user and a new table - and i have to do it in the MySQL Workbench.
This ist my docker run command:
docker run -p 3306:3306 --name mysql-server -v ~/Development/web/myproject/docker/mysql:/var/lib/mysql -e MYSQL_ROOT_PASSWORD=root -d mysql:latest
My Question is:
How can i add a sql startup script (only for the first start of the container) which creates my user and my table?
Which steps do i have to do?
Could some one help me here?
Thanks a lot!
You need to create user via MYSQL_USER, MYSQL_PASSWORD env vars and use volume /docker-entrypoint-initdb.d to map directory with your startup scripts (.sh, .sql, .sql.gz)
docker run -p 3306:3306 --name mysql-server \
-v ~/Development/web/myproject/docker/mysql:/var/lib/mysql \
-v ~/Development/web/myproject/docker/yourstartupscripts:/docker-entrypoint-initdb.d \
-e MYSQL_ROOT_PASSWORD=root \
-e MYSQL_USER=youruser \
-e MYSQL_PASSWORD=youruserpassword \
-d mysql:latest
Explanation from: https://hub.docker.com/_/mysql/
MYSQL_USER, MYSQL_PASSWORD
These variables are optional, used in conjunction to create a new user and to set that user's password. This user will be granted superuser permissions (see above) for the database specified by the MYSQL_DATABASE variable. Both variables are required for a user to be created.
Initializing a fresh instance
When a container is started for the first time, a new database with the specified name will be created and initialized with the provided configuration variables. Furthermore, it will execute files with extensions .sh, .sql and .sql.gz that are found in /docker-entrypoint-initdb.d. Files will be executed in alphabetical order. You can easily populate your mysql services by mounting a SQL dump into that directory and provide custom images with contributed data. SQL files will be imported by default to the database specified by the MYSQL_DATABASE variable.

Can I use fig to initialise a persisting database in docker?

I am trying to automate the installation and running of set of linked docker containers using fig. The configuration is composed of a container running RStudio linked to a container running MySQL, such that I can query the MySQL database from RStudio.
On first run, I would like to create the MySQL container from the base MySQL image, and populate it with a user and database. From the command line, something like this:
#Get the latest database file
wget -P /tmp http://ergast.com/downloads/f1db.sql.gz && gunzip -f /tmp/f1db.sql.gz
#Create the database container with user, password and database
docker run --name ergastdb -e MYSQL_USER=ergast -e MYSQL_ROOT_PASSWORD=mrd -e MYSQL_DATABASE=f1db -d mysql
#Populate the database
docker run -it --link=ergastdb:mysql -v /tmp:/tmp/import --rm mysql sh -c 'exec mysql -h$MYSQL_PORT_3306_TCP_ADDR -P$MYSQL_PORT_3306_TCP_PORT -uergast -pmrd f1db < /tmp/import/f1db.sql'
#Fire up RStudio and link to the MySQL db
docker run --name f1djd -p 8788:8787 --link ergastdb:db -d rocker/hadleyverse
If I could get hold of a database image with the data preloaded, I guess that something like the following fig.yml script could link the elements?
gdrive:
command: echo created
image: busybox
volumes:
- "~/Google Drive/shareddata:/gdrive"
dbdata:
image: mysql_preloaded
environment:
MYSQL_USER=ergast
MYSQL_ROOT_PASSWORD=mrd
MYSQL_DATABASE=f1db
rstudio:
image: rocker/hadleyverse
links:
- dbdata:db
ports:
- "8788:8787"
volumes_from:
- gdrive
My question is, can I use a one-shot fig step to create the dbdata container, then perhaps mount a persistent volume, link to it and initialise the database, presumably as part of an initial fig up. If I then start and stop containers, I don't want to run the db initialisation step again, just link to the data volume container that contains the data I previously installed.
I also notice that the MySQL docker image looks like it will support arbitrary datadir definitions (Update entrypoints to read DATADIR from the MySQL configuration directly instead of assuming /var/lib/docker). As I understand it, the current definition of the MySQL image prevents mounting (and hence persisting) the database contents within the database container. I guess this might make it possible to create a mysql_preloaded image, but I don't think the latest version of the MySQL docker script has been pushed to dockerhub just yet and I can't quite think my way to how fig might then be able to make use of this alternative pathway?
Some options:
Edit the fig.yml to run a custom command that is different than the default image command/entrypoint.
From http://www.fig.sh/yml.html (example):
command: bundle exec thin -p 3000
Start the container locally, modify it and then commit it as a new image.
Modify the MySQL image docker-entrypoint.sh file to do your custom initialization.
https://github.com/docker-library/mysql/blob/567028d4e177238c58760bcd69a8766a8f026e2a/5.7/docker-entrypoint.sh
Couldn't you just roll your own version of the MySQL docker image? The official one from MySQL "upstream" is available at https://github.com/mysql/mysql-docker/blob/mysql-server/5.7/Dockerfile
What if you simply make your own copy of that, remove the VOLUME line (line 11) and then you can
docker build -t my_mysql .
docker run -d --name=empty_db my_mysql ...
# add data to the database running in the container
docker commit empty_db primed_db
docker rm -v empty_db
docker run -d --name=instance1 primed_db
docker run -d --name=instance2 primed_db
which should leave you with two running "identical" but fully isolated instances.

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