Pandas DataFrame to MySQL export with Unicode characters - mysql

Question

I have been trying to export a large pandas dataframe using DataFrame.to_sql to a MySQL database, but the dataframe has unicode characters in some columns, some of which cause warnings during export and are converted to ?.
I managed to reproduce the issue with this example (database login removed):
import pandas as pd
import sqlalchemy
import pymysql
engine = sqlalchemy.create_engine('mysql+pymysql://{}:{}#{}/{}?charset=utf8'.format(*login_info), encoding='utf-8')
df_test = pd.DataFrame([[u'\u010daj',2], \
['čaj',2], \
['špenát',4], \
['květák',7], \
['kuře',1]], \
columns = ['a','b'])
df_test.to_sql('test', engine, if_exists = 'replace', index = False, dtype={'a': sqlalchemy.types.UnicodeText()})
The first two rows of the dataframe should be the same, just defined differently.
I get the following warning, and the problematic characters (č, ě, ř) are rendered as ?:
/usr/local/lib/python3.6/site-packages/pymysql/cursors.py:166: Warning: (1366, "Incorrect string value: '\\xC4\\x8Daj' for column 'a' at row 1")
result = self._query(query)
/usr/local/lib/python3.6/site-packages/pymysql/cursors.py:166: Warning: (1366, "Incorrect string value: '\\xC4\\x8Daj' for column 'a' at row 2")
result = self._query(query)
/usr/local/lib/python3.6/site-packages/pymysql/cursors.py:166: Warning: (1366, "Incorrect string value: '\\xC4\\x9Bt\\xC3\\xA1k' for column 'a' at row 4")
result = self._query(query)
/usr/local/lib/python3.6/site-packages/pymysql/cursors.py:166: Warning: (1366, "Incorrect string value: '\\xC5\\x99e' for column 'a' at row 5")
result = self._query(query)
with the resulting database table test looking like this:
a b
?aj 2
?aj 2
špenát 4
kv?ták 7
ku?e 1
Curiously, the ž, š and á characters (and others in my full dataset) are processed correctly, so it seems to only affect a subset of unicode characters. As you can see above, I also tried setting utf-8 wherever I could (engine, DataFrame.to_sql) with no effect.

Answer 1

pymysql:
import pymysql
con = pymysql.connect(host='127.0.0.1', port=3306,
user='root', passwd='******',
charset="utf8mb4")
sqlalchemy:
db_url = sqlalchemy.engine.url.URL(drivername='mysql', host=foo.db_host,
database=db_schema,
query={ 'read_default_file' : foo.db_config, 'charset': 'utf8mb4' })
See "Best practice" in http://stackoverflow.com/questions/38363566/trouble-with-utf8-characters-what-i-see-is-not-what-i-stored Explanation of ?:
The bytes to be stored are not encoded as utf8/utf8mb4. Fix this.
The column in the database is CHARACTER SET utf8 (or utf8mb4). Fix this.
Also, check that the connection during reading is UTF-8.
(Note: The CHARACTER SETs utf8 and utf8mb4 are interchangeable for European languages.)
These are Czech characters?

Answer 2

I haved met the same problem,use pymysql drive as well.
I change mysql drive to mysql-connector,1366 Warning disappear
install mysql-connector drive
pip install mysql-connector
sqlalchemy engine setting like this
create_engine('mysql+mysqlconnector://root:tj1996#localhost:3306/new?charset=utf8mb4')