Do I have too many columns in my MySQL table? - mysql

I'm a junior doctor and I'm creating a database system for my senior doctor.
Basically, my senior Dr wants to be able to store a whole lot of information on each of his patients in a relational database so that later, he can very easily and quickly analyse / audit the data (i.e. based on certain demographics, find which treatments result in better outcomes or which ethnicities respond better to certain treatments etc. etc.).
The information he wants to store for each patient is huge.
Each patient is to complete 7 surveys (each only takes 1-2 minutes) a number of times (immediately before their operation, immediately postop, 3months postop, 6months postop, 2years postop and 5years postop) - the final scores of each of these survey at these various times will be stored in the database.
Additionally, he wants to store their relevant details (name, ethnicity, gender, age etc etc).
Finally, he also intends to store A LOT of relevant past medical history, current symptoms, examination findings, the various treatment options they try and then outcome measures.
Basically, there's A LOT of info for each patient. And all of this info will be unique to each patient. So because of this, I've created one HUGE patient table with (~400 columns) to contain all of this info. The reason I've done this is because most of the columns in the table will NOT be redundant for each patient.
Additionally, this entire php / mysql database system is only going to live locally on his computer, it'll never be on the internet.
The tables won't have too many patients, maybe around 200 - 300 by the end of the year.
Given all of this, is it ok to have such a huge table?
Or should I be splitting it into smaller tables
i.e.
- Patient demographics
- Survey results
- Symptoms
- Treatments
etc. etc, with a unique "patient_id" being the link between each of these tables?
What would be the difference between the 2 approaches and which would be better? Why?

About the 400 columns...
Which, if any, of the columns will be important to search or sort on? Probably very few of them. Keep those few columns as columns.
What will you do with the rest? Probably you simply display them somewhere, using some app code to pretty-print them? So these may as well be in a big JSON string.
This avoids the EAV nightmares, yet stores the data in the database in a format that is actually reasonably easy (and fast) to use.

Related

Is is necessary to link or join tables in MySQL?

I've created many databases before, but I have never linked two tables together. I've tried looking around, but cannot find WHY one would need to link two or more tables together.
There is a good tutorial here that goes over database relationships, but does not explain why they would be needed. He just simply says that they are.
Are they truly necessary? I understand that (in his example) all orders have a customer, and so one would link the orders table to the customers table, but I just don't see why this would be absolutely necessary. I can (and have) created shopping carts and other complex databases that work just fine without creating any table relationships.
I've just started playing around with MySQL Workbench v6.0 for a new project that has a fairly large and complex database, and so I'm wondering if I am losing anything by creating the entire project without relationships?
NOTE: Please let me know if this question is too general or off topic, and I will change it. I understand that a lot can be said about this topic, and so I'm really just looking to know if I am opening myself up to any security issues or significant performance issues by not using relationships. Please be specific in your response; "Yes you are opening yourself up to performance issues" is useless and not helpful for myself, nor for anyone else looking at this thread at a later date. Please include details and specifics in your response.
Thank you in advance!
As Sam D points out in the comments, entire books can be written about database design and why having tables with relationships can make a lot of sense.
That said, theoretically, you lose absolutely no expressive/computational power by just putting everything in the same table. The primary arguments against doing so likely deal with performance and maintenance issues that might arise.
The answer revolves around granularity, space consumption, speed, and detail.
Inherently different types of data will be more granular than others, as items can always be rolled up to a larger umbrella. For a chain of stores, items sold can be rolled up into transactions, transactions can be rolled up into register batches, register batches can be rolled up to store sales, store sales can be rolled up to company sales. The two options then are:
Store the data at the lowest grain in a single table
Store the data in separate tables that are dedicated to purpose
In the first case, there would be a lot of redundant data, as each item sold at location 3 of 430 would have store, date, batch, transaction, and item information. That redundant data takes up a large volume of space, when you could very easily create separated tables for their unique purpose.
In this example, lets say there were a thousand transactions a day totaling a million items sold from that one store. By creating separate tables you would have:
Stores = 430 records
Registers = 10 records
Transactions = 1000 records
Items sold = 1000000 records
I'm sure your asking where the space savings comes in ... it is in the detail for each record. The store table has names, address, phone, etc. The register has number, purchase date, manager who reconciles, etc. Transactions have customer, date, time, amount, tax, etc. If these values were duplicated for every record over a single table it would be a massive redundancy of data adding up to far more space consumption than would occur just by linking a field in one table (transaction id) to a field in another table (item id) to show that relationship.
Additionally, the amount of space consumed, as well as the size of the overall table, inversely impacts the speed of you querying that data. By keeping tables small and capitalizing on the relationship identifiers to link between them, you can greatly increase the response time. Every time the query engine needs to find a value, it traverses the table until it finds it (that is a grave oversimplification, but not untrue), so the larger and broader the table the longer the seek time. These problems do not exist with insignificant volumes of data, but for organizations that deal with millions, billions, trillions of records (I work for one of them) storing everything in a single table would make the application unusable.
There is so very, very much more on this topic, but hopefully this gives a bit more insight.
Short answer: In a relational database like MySQL Yes. Check this out about referential integrity http://databases.about.com/cs/administration/g/refintegrity.htm
That does not mean that you have to use relational databases for your project. In fact the trend is to use Non-Relational databases (NoSQL), like MongoDB to achieve same results with better performance. More about RDBMS vs NoSQL http://www.zdnet.com/rdbms-vs-nosql-how-do-you-pick-7000020803/
I think that with this example you will understand better:
Let's we want to create on-line store. We have at minimum Users, Payments and Events (events about the pages where the user navigates or other actions). In this scenario we want to link in a secure and relational way the Users with the Payments. We do not want a Payment to be lost or assigned to another User. So we can use a RDBMS like MySQL to create the tables Users and Payments and linked the with proper Foreign Keys. However for the events, we are going to be a lot of them per users (maybe millions) and we need to track them in a fast way without killing the relation database. In that case a No-SQL database like MongoDB makes totally sense.
To sum up to can use an hybrid of SQL and NO-SQL, but either if you use one, the other or both kind of solutions, do it properly.

Data structure for various tournament/competition types (league, ladder, single/double elimination etc.)

I'm attempting to build a system where users can easily create various types of tournaments and participate in them with other users. It's for no specific game, but instead a general purpose tool for viewing and updating tournament results from any device as quickly as possible, with bare minimum interaction, so the actual application doesn't get in the way in parties and such.
The user profiles, tournaments and results are kept in database, but the changes in tournaments should instantly reflect in the client's view, animated and without page reloads (JavaScript), then be sent to the server via ajax, verified and saved to a database (PHP, MySQL). The clients constantly listen to the server and update the view for all clients when any updates have been made (anything from contestant renames, to match results and drop-outs etc.)
I found some data models for single or double elimination tournaments, but this one is supposed to support a wide variety of tournament types, like league, ladder, single/double elimination and round robin.
So what sort of data(base) model I should use for a project like this, that is basically a Google Docs spreadsheet, but with predefined look and controls for each tournament type?
Should I go for a model that fits all the tournaments, or create separate tables for all the different tournament types? Any resources that might be useful for a project like this?
There are several questions/issues here, so I'll try to address each one.
All tournament interactions should be real time/reflected to many users.
For small to medium traffic on your website, this might not be a problem. For heavier traffic, this will quickly start to be a major issue.
Consider as an example how often you want to poll the database with your AJAX calls. Every second? So if you have 100 people with a page open, you have 100 database calls every second? You'll find that will quickly kill your database.
Even though this is slightly off topic, I would strongly recommend investigating how to cache tournament results ahead of time. You can cache the stats, etc. and either let them expire or expire them pro-actively, but definitely spend some time researching it.
Real time stats/results
Keep in mind that joins take time in relational databases. If you normalize your tournament structure heavily, then getting stats might be painful. The hardest part of the system to make efficient is going to be the aggregates and statistics from each tournament.
When you're designing your database/tables/views/stored procedures, keep in mind the end goal - getting stats quickly. This might mean not normalizing the data too much (to avoid too many joins). It might also mean paying very close attention to your data types - for example using bits/shorts/etc. instead of integers.
How to model the different tournament types
I'm not familiar with tournament models, but I do have specific advice on how to model. =)
Some questions you should ask yourself:
Do all tournaments have common fields? In other words, for a round robin tournament we store 10 fields. For a single elimination tournament we store 11 fields. If they share the same 10 fields, then I would recommend putting all tournament types into one table and then use a tournament_type field to determine the type of tournament for your application.
Do all tournaments not have common fields? Make them separate tables - one per tournament type. You might make one table for shared data, but then have different tables for specific information.
Will tournament fields grow apart over time? Over time you'll want to add fields to tournament types. If you predict the tournaments will become very unique and very specific over time, make them separate. Otherwise you end up with lots of fields that have tons of NULL values in them.
Have you considered a NoSQL solution? The nice thing about a NoSQL store is that it denormalizes the data so you don't have joins. Also you can have heterogeneous (different types of data) in the same "table" or container. Just something to consider because it might make your life considerably easier. Check out MongoDB as an example.

Database (MySQL) structuring: pros and cons of multiple tables

I am collecting data and storing it MySQL, for:
75 variables
55 countries
Each year
I have, at this stage since I am building this tool created a single table, of variables / countries (storing 1 year worth of data).
Next year (and for several years after that) a new set of data will be input for each country.
There are therefore 3 variables in controlling data returned to a user reviewing all collected data. The general form of any query would be:
Show me these specifics variables, for these specific countries, for these specific years.
(Show me average age and weight, for USA and Canada, for 2012 and 2009, for example)
My question is, it seems that I have two options for arranging this data:
-Multiple tables where I create a table of country / variable for each year data is collected
- Single table and simply add a column (field) for the year that data relates to.
As far as I can tell I could make these database calls with either sructure, but is one more powerful / efficient / quicker, and why?
Thanks for your consideration.
It's a PDO / PHP interface if that is relevent.
Using a relational approach generally involves more tables. This translates into queries being a bit more slow (though probably not noticeable in small databases) and database size to be smaller. This makes it simpler to update information properly and thus ensure data integrity. For example, if Joe's address changes you know it will be changed on all reports using Joe's address.
Using less linked tables where one field can be repeated multiple times you risk having disparity between data from different tables where you would naturally expect it to be equal. Access speed should be a bit faster if you arrange your tables properly because your information will be grouped according to how you access it.
For example, in the first method you would have an Orders table with a Supplier and Client table to make a complete invoice whereas in the second method you would want to put some information of both Supplier and Client in the Orders table such that accessing that finding the row corresponding to the invoice number you are looking for would return the entire set of data that you need (thus eliminating the need for joins on Supplier and Client and reducing load on the database server).
Edit: I think a better answer would require a bit more information about your data (samples for example).

MySQL: normalization, is this a valid exception?

We have 10 years of archived sports data, spread across separate databases.
Trying to consolidate all the data into a single database. Since we'll be handling 10X the number of records, I'm trying to make schema redesign changes now to avoid potential performance hit.
One change entails breaking up the team roster table into 2 tables; one, a players table that stores fixed data: playerID, firstName, lastName, birthDate, etc., and another, the new roster table that stores variable data about a player: yearInSchool, jerseyNumber, position, height, weight, etc. This will allow us to, among other things, create career 4 year aggregate views of player stats.
Fair enough, makes sense, but then again, when I look at queries that tally, for example, a players aggregate scoring stats, I have to join on both player & roster tables, in addition to scoring and schedule tables, in order to get all the information needed.
Where I'm considering denormalizing is with player first and last name. If I store player first and last name in the roster table, then I can omit the player table from the equation for stat queries, which I'm assuming will be a big performance win given that total record count per table will be over 100K (i.e. most query joins will be across tables that each contain at least 100K records, and up to, for now, 300K).
So, where to draw the line with denormalization in this case? I assume duplicating first, last name is OK. Generally I enjoy non-duplication/integrity of data, but I suspect site visitors enjoy performance more!
First thought is, are you sure you've exhausted tuning options to get good SELECT performance without denormalising here?
I'm very much with you in the sense of "no sacred cows" and denormalise when necessary, but this sounds like a case where it shouldn't be too hard to get decent performance.
Of course you guys have done your own exploration, if you've ruled that out then personal opinion is it's acceptable, yeah.
One issue - what happens if a player's name changes? Can it do so in your system? Would you use a transation to update all roster details in a single COMMIT operation? For a historical records Db this could be totally irrelevant mind you.

First-time database design: am I overengineering? [closed]

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Background
I'm a first year CS student and I work part time for my dad's small business. I don't have any experience in real world application development. I have written scripts in Python, some coursework in C, but nothing like this.
My dad has a small training business and currently all classes are scheduled, recorded and followed up via an external web application. There is an export/"reports" feature but it is very generic and we need specific reports. We don't have access to the actual database to run the queries. I've been asked to set up a custom reporting system.
My idea is to create the generic CSV exports and import (probably with Python) them into a MySQL database hosted in the office every night, from where I can run the specific queries that are needed. I don't have experience in databases but understand the very basics. I've read a little about database creation and normal forms.
We may start having international clients soon, so I want the database to not explode if/when that happens. We also currently have a couple big corporations as clients, with different divisions (e.g. ACME parent company, ACME healthcare division, ACME bodycare division)
The schema I have come up with is the following:
From the client perspective:
Clients is the main table
Clients are linked to the department they work for
Departments can be scattered around a country: HR in London, Marketing in Swansea, etc.
Departments are linked to the division of a company
Divisions are linked to the parent company
From the classes perspective:
Sessions is the main table
A teacher is linked to each session
A statusid is given to each session. E.g. 0 - Completed, 1 - Cancelled
Sessions are grouped into "packs" of an arbitrary size
Each packs is assigned to a client
I "designed" (more like scribbled) the schema on a piece of paper, trying to keep it normalised to the 3rd form. I then plugged it into MySQL Workbench and it made it all pretty for me: (Click here for full-sized graphic)
(source: maian.org)
Example queries I'll be running
Which clients with credit still left are inactive (those without a class scheduled in the future)
What is the attendance rate per client/department/division (measured by the status id in each session)
How many classes has a teacher had in a month
Flag clients who have low attendance rate
Custom reports for HR departments with attendance rates of people in their division
Question(s)
Is this overengineered or am I headed the right way?
Will the need to join multiple tables for most queries result in a big performance hit?
I have added a 'lastsession' column to clients, as it is probably going to be a common query. Is this a good idea or should I keep the database strictly normalised?
Thanks for your time
Some more answers to your questions:
1) You're pretty much on target for someone who is approaching a problem like this for the first time. I think the pointers from others on this question thus far pretty much cover it. Good job!
2 & 3) The performance hit you will take will largely be dependent on having and optimizing the right indexes for your particular queries / procedures and more importantly the volume of records. Unless you are talking about well over a million records in your main tables you seem to be on track to having a sufficiently mainstream design that performance will not be an issue on reasonable hardware.
That said, and this relates to your question 3, with the start you have you probably shouldn't really be overly worried about performance or hyper-sensitivity to normalization orthodoxy here. This is a reporting server you are building, not a transaction based application backend, which would have a much different profile with respect to the importance of performance or normalization. A database backing a live signup and scheduling application has to be mindful of queries that take seconds to return data. Not only does a report server function have more tolerance for complex and lengthy queries, but the strategies to improve performance are much different.
For example, in a transaction based application environment your performance improvement options might include refactoring your stored procedures and table structures to the nth degree, or developing a caching strategy for small amounts of commonly requested data. In a reporting environment you can certainly do this but you can have an even greater impact on performance by introducing a snapshot mechanism where a scheduled process runs and stores pre-configured reports and your users access the snapshot data with no stress on your db tier on a per request basis.
All of this is a long-winded rant to illustrate that what design principles and tricks you employ may differ given the role of the db you're creating. I hope that's helpful.
You've got the right idea. You can however clean it up, and remove some of the mapping (has*) tables.
What you can do is in the Departments table, add CityId and DivisionId.
Besides that, I think everything is fine...
The only changes I would make are:
1- Change your VARCHAR to NVARCHAR, if you might be going international, you may want unicode.
2- Change your int id's to GUIDs (uniqueidentifier) if possible (this might just be my personal preference). Assuming you eventually get to the point where you have multiple environments (dev/test/staging/prod), you may want to migrate data from one to the other. Have GUID Ids makes this significantly easier.
3- Three layers for your Company -> Division -> Department structure may not be enough. Now, this might be over-engineering, but you could generalize that hierarchy such that you can support n-levels of depth. This will make some of your queries more complex, so that may not be worth the trade-off. Further, it could be that any client that has more layers may be easily "stuffable" into this model.
4- You also have a Status in the Client Table that is a VARCHAR and has no link to the Statuses table. I'd expect a little more clarity there as to what the Client Status represents.
No. It looks like you're designing at a good level of detail.
I think that Countries and Companies are really the same entity in your design, as are Cities and Divisions. I'd get rid of the Countries and Cities tables (and Cities_Has_Departments) and, if necessary, add a boolean flag IsPublicSector to the Companies table (or a CompanyType column if there are more choices than simply Private Sector / Public Sector).
Also, I think there's an error in your usage of the Departments table. It looks like the Departments table serves as a reference to the various kinds of departments that each customer division can have. If so, it should be called DepartmentTypes. But your clients (who are, I assume, attendees) do not belong to a department TYPE, they belong to an actual department instance in a company. As it stands now, you will know that a given client belongs to an HR department somewhere, but not which one!
In other words, Clients should be linked to the table that you call Divisions_Has_Departments (but that I would call simply Departments). If this is so, then you must collapse Cities into Divisions as discussed above if you want to use standard referential integrity in the database.
By the way, it's worth noting that if you're generating CSVs already and want to load them into a mySQL database, LOAD DATA LOCAL INFILE is your best friend: http://dev.mysql.com/doc/refman/5.1/en/load-data.html . Mysqlimport is also worth looking into, and is a command-line tool that's basically a nice wrapper around load data infile.
Most things have already been said, but I feel that I can add one thing: it is quite common for younger developers to worry about performance a little bit too much up-front, and your question about joining tables seems to go into that direction. This is a software development anti-pattern called 'Premature Optimization'. Try to banish that reflex from your mind :)
One more thing: Do you believe you really need the 'cities' and 'countries' tables? Wouldn't having a 'city' and 'country' column in the departments table suffice for your use cases? E.g. does your application need to list departments by city and cities by country?
Following comments based on role as a Business Intelligence/Reporting specialist and strategy/planning manager:
I agree with Larry's direction above. IMHO, It's not so much over engineered, some things just look a little out of place. To keep it simple, I would tag client directly to a Company ID, Department Description, Division Description, Department Type ID, Division Type ID. Use Department Type ID and Division Type ID as references to lookup tables and internal reporting/analysis fields for long term consistency.
Packs table contains "Credit" column, shouldn't that actually be tied to the Client base table so if they many packs you can see how much credit owed is left for future classes? The application can take care of the calc and store it centrally in the Client table.
Company info could use many more fields, including the obvious address/phone/etc. information. I'd also be prepared to add in D&B "DUNs" columns (Site/Branch/Ultimate) long term, Dun and Bradstreet (D&B) has a huge catalog of companies and you'll find later down the road their information is very helpful for reporting/analysis. This will take care of the multiple division issue you mention, and allow you to roll up their hierarchy for sub/division/branches/etc. of large corps.
You don't mention how many records you'll be working with which could imply setting yourself up for a large development initiative which could have been done quicker and far fewer headaches with prepackaged "reporting" software. If your not dealing with a large database (< 65000) rows, make sure MS-Access, OpenOffice (Base) or related report/app dev solutions couldn't do the trick. I use Oracle's free APEX software quite a bit myself, it comes with their free database Oracle XE just download it from their site.
FYI - Reporting insight: for large databases, you typically have two database instances a) transaction database for recording each detailed record. b) reporting database (data mart/data warehouse) housed on a separate machine. For more information search google both Star Schema and Snowflake Schema.
Regards.
I want to address only the concern that joining to mutiple tables will casue a performance hit. Do not be afraid to normalize because you will have to do joins. Joins are normal and expected in relational datbases and they are designed to handle them well. You will need to set PK/FK relationships (for data integrity, this is important to consider in designing) but in many databases FKs are not automatically indexed. Since they wil be used in the joins, you will definitelty want to start by indexing the FKS. PKs generally get an index on creation as they have to be unique. It is true that datawarehouse design reduces the number of joins, but usually one doesn't get to the point of data warehousing until one has millions of records needed to be accessed in one report. Even then almost all data warehouses start with a transactional database to collect the data in real time and then data is moved to the warehouse on a schedule (nightly or monthly or whatever the business need is). So this is a good start even if you need to design a data warehouse later to improve report performance.
I must say your design is impressive for a first year CS student.
It isn't over-engineered, this is how I would approach the problem. Joining is fine, there won't be much of a performance hit (it's completely necessary unless you de-normalise the database out which isn't recommended!). For statuses, see if you can use an enum datatype instead to optimise that table out.
I've worked in the training / school domain and I thought I'd point out that there's generally a M:1 relationship between what you call "sessions" (instances of a given course) and the course itself. In other words, your catalog offers the course ("Spanish 101" or whatever), but you might have two different instances of it during a single semester (Tu-Th taught by Smith, Wed-Fri taught by Jones).
Other than that, it looks like a good start. I bet you'll find that the client domain (graphs leading to "clients") is more complex than you've modeled, but don't go overboard with that until you've got some real data to guide you.
A few things came to mind:
The tables seemed geared to reporting, but not really running the business. I would think when a client signs up, there's essentially an order being placed for the client attending a list of sessions, and that order might be for multiple employees in one company. It would seem an "order" table would really be at the center of your system and driving your data capture and eventual reporting. (Compare the paper documents you've been using to run the business with your database design to see if there's a logical match.)
Companies often don't have divisions. Employees sometimes change divisions/departments, maybe even mid-session. Companies sometimes add/delete/rename divisions/departments. Make sure the possible realtime changing contents of your tables doesn't make subsequent reporting/grouping difficult. With so much contact data split over so many tables, you might have to enforce very strict data entry validation to keep your reports meaningful and inclusive. Eg, when a new client is added, making sure his company/division/department/city match the same values as his coworkers.
The "packs" concept isn't clear at all.
Since you indicate it's a small business, it would be surprising if performance would be an issue, considering the speed and capacity of current machines.