JPA Disconnect to MYSQL [duplicate] - mysql

This question already has an answer here:
Connection to Db dies after >4<24 in spring-boot jpa hibernate
(1 answer)
Closed 6 years ago.
Exception:
The last packet successfully received from the server was 2,405,585
milliseconds ago. The last packet sent successfully to the server was
30,340 milliseconds ago.
javax.persistence.PersistenceException: org.hibernate.exception.JDBCConnectionException: could not extract
ResultSet
WARN : org.hibernate.engine.jdbc.spi.SqlExceptionHelper - SQL Error: 0, SQLState: null
ERROR: org.hibernate.engine.jdbc.spi.SqlExceptionHelper - Already closed.
at org.hibernate.jpa.spi.AbstractEntityManagerImpl.convert(AbstractEntityManagerImpl.java:1763)
at org.hibernate.jpa.spi.AbstractEntityManagerImpl.convert(AbstractEntityManagerImpl.java:1677)
at org.hibernate.jpa.internal.QueryImpl.getResultList(QueryImpl.java:458)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.springframework.orm.jpa.SharedEntityManagerCreator$DeferredQueryInvocationHandler.invoke(SharedEntityManagerCreator.java:310)
at com.sun.proxy.$Proxy27.getResultList(Unknown Source)
at com.health.dao.HospitalDaoImpl.findByPostcode(HospitalDaoImpl.java:32)
at com.health.service.HospitalServiceImpl.findHospitalByPostCode(HospitalServiceImpl.java:21)
at com.health.travel.HospitalController.search(HospitalController.java:64)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.springframework.web.method.support.InvocableHandlerMethod.invoke(InvocableHandlerMethod.java:212)
at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:126)
at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:96)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:617)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:578)
at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:80)
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:900)
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:827)
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:882)
at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:789)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:648)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:729)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:291)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:212)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:141)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79)
at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:616)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:521)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1096)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:674)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1500)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1456)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.hibernate.exception.JDBCConnectionException: could not extract ResultSet
at org.hibernate.exception.internal.SQLStateConversionDelegate.convert(SQLStateConversionDelegate.java:132)
at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:49)
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:126)
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:112)
at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.extract(ResultSetReturnImpl.java:89)
at org.hibernate.loader.Loader.getResultSet(Loader.java:2065)
at org.hibernate.loader.Loader.executeQueryStatement(Loader.java:1862)
at org.hibernate.loader.Loader.executeQueryStatement(Loader.java:1838)
at org.hibernate.loader.Loader.doQuery(Loader.java:909)
at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:354)
at org.hibernate.loader.Loader.doList(Loader.java:2553)
at org.hibernate.loader.Loader.doList(Loader.java:2539)
at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2369)
at org.hibernate.loader.Loader.list(Loader.java:2364)
at org.hibernate.loader.hql.QueryLoader.list(QueryLoader.java:496)
at org.hibernate.hql.internal.ast.QueryTranslatorImpl.list(QueryTranslatorImpl.java:387)
at org.hibernate.engine.query.spi.HQLQueryPlan.performList(HQLQueryPlan.java:231)
at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1264)
at org.hibernate.internal.QueryImpl.list(QueryImpl.java:103)
at org.hibernate.jpa.internal.QueryImpl.list(QueryImpl.java:573)
at org.hibernate.jpa.internal.QueryImpl.getResultList(QueryImpl.java:449)
... 46 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException:
Communications link failure
com.health.dao.HospitalDaoImpl.findHospitalByPostCode
/**
* Find hospital by post code
*/
#SuppressWarnings("unchecked")
#Transactional
#Override
public List<Hospital> findByPostcode(int postcode) {
try {
String str = "SELECT h FROM Hospital h WHERE h.postcode BETWEEN ?1 AND ?2";
Query query = em.createQuery(str);
query.setParameter(1, postcode - 2);
query.setParameter(2, postcode + 2);
return query.getResultList();
} catch (Exception e) {
// TODO Auto-generated catch block
em.close();
e.printStackTrace();
return null;
} finally {
em.close();
}
}

You're calling em.close() twice in your method, but you shouldn't need any of them. As you have the method annotated with #Transactional, the Spring framework will take care of managing it as a declarative transaction and opening-closing the connection (if you have it properly configured).
See also:
Spring Transaction Management

Related

Spark - connecting to mysql through Zeppelin EMR

I am trying to connect to MySQL instance from AWS EMR - Zeppelin notebook. Loaded the mysql connector to this location - /usr/lib/spark/jars/mysql-connector-java-5.0.4-bin.jar . And added this as an artifact in zeppelin interpreter.
Initiating the driver,
Class.forName("com.mysql.jdbc.Driver")
res77: Class[_] = class com.mysql.jdbc.Driver
Using Scala code as here,
Trial 1,
val jdbcDF = spark.read.format("jdbc").options(
Map("url" -> "jdbc:mysql://our-host.readm.co.nz:3306/testdb?user=testuser&password=****",
"dbtable" -> "testdb.tablename",
"driver" -> "com.mysql.jdbc.Driver",
"partitionColumn" -> "id", "lowerBound" -> "1", "upperBound" -> "41514638", "numPartitions" -> "20"
)).load()
Got this error,
com.mysql.jdbc.CommunicationsException: Communications link failure due to underlying exception:
** BEGIN NESTED EXCEPTION **
java.net.SocketException
MESSAGE: java.net.ConnectException: Connection timed out (Connection timed out)
STACKTRACE:
java.net.SocketException: java.net.ConnectException: Connection timed out (Connection timed out)
at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:156)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:276)
at com.mysql.jdbc.Connection.createNewIO(Connection.java:2666)
at com.mysql.jdbc.Connection.<init>(Connection.java:1531)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:266)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$1.apply(JdbcUtils.scala:61)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$1.apply(JdbcUtils.scala:52)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRDD$.resolveTable(JDBCRDD.scala:58)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRelation.<init>(JDBCRelation.scala:114)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcRelationProvider.createRelation(JdbcRelationProvider.scala:52)
at org.apache.spark.sql.execution.datasources.DataSource.resolveRelation(DataSource.scala:307)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:178)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:146)
at <init>(<console>:50)
at <init>(<console>:55)
at <init>(<console>:57)
at <init>(<console>:59)
at <init>(<console>:61)
at <init>(<console>:63)
at <init>(<console>:65)
at <init>(<console>:67)
at <init>(<console>:69)
at <init>(<console>:71)
at <init>(<console>:73)
at <init>(<console>:75)
at <init>(<console>:77)
at <init>(<console>:79)
at <init>(<console>:81)
at <init>(<console>:83)
at <init>(<console>:85)
at <init>(<console>:87)
at <init>(<console>:89)
at <init>(<console>:91)
at <init>(<console>:93)
at .<init>(<console>:97)
at .<clinit>(<console>)
at .$print$lzycompute(<console>:7)
at .$print(<console>:6)
at $print(<console>)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at scala.tools.nsc.interpreter.IMain$ReadEvalPrint.call(IMain.scala:786)
at scala.tools.nsc.interpreter.IMain$Request.loadAndRun(IMain.scala:1047)
at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:638)
at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:637)
at scala.reflect.internal.util.ScalaClassLoader$class.asContext(ScalaClassLoader.scala:31)
at scala.reflect.internal.util.AbstractFileClassLoader.asContext(AbstractFileClassLoader.scala:19)
at scala.tools.nsc.interpreter.IMain$WrappedRequest.loadAndRunReq(IMain.scala:637)
at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:569)
at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:565)
at sun.reflect.GeneratedMethodAccessor369.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.zeppelin.spark.Utils.invokeMethod(Utils.java:38)
at org.apache.zeppelin.spark.SparkInterpreter.interpret(SparkInterpreter.java:1000)
at org.apache.zeppelin.spark.SparkInterpreter.interpretInput(SparkInterpreter.java:1205)
at org.apache.zeppelin.spark.SparkInterpreter.interpret(SparkInterpreter.java:1172)
at org.apache.zeppelin.spark.SparkInterpreter.interpret(SparkInterpreter.java:1165)
at org.apache.zeppelin.interpreter.LazyOpenInterpreter.interpret(LazyOpenInterpreter.java:97)
at org.apache.zeppelin.interpreter.remote.RemoteInterpreterServer$InterpretJob.jobRun(RemoteInterpreterServer.java:498)
at org.apache.zeppelin.scheduler.Job.run(Job.java:175)
at org.apache.zeppelin.scheduler.FIFOScheduler$1.run(FIFOScheduler.java:139)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
** END NESTED EXCEPTION **
Last packet sent to the server was 1 ms ago.
at com.mysql.jdbc.Connection.createNewIO(Connection.java:2741)
at com.mysql.jdbc.Connection.<init>(Connection.java:1531)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:266)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$1.apply(JdbcUtils.scala:61)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$1.apply(JdbcUtils.scala:52)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRDD$.resolveTable(JDBCRDD.scala:58)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRelation.<init>(JDBCRelation.scala:114)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcRelationProvider.createRelation(JdbcRelationProvider.scala:52)
at org.apache.spark.sql.execution.datasources.DataSource.resolveRelation(DataSource.scala:307)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:178)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:146)
... 58 elided
Then trial 2,
val partitionColumn = "id"
val dbUrl = "jdbc:mysql://our-host.readm.co.nz:3306"
val lowerBound = 1
val upperBound = 41514638
val jdbcDF = spark.read.format("jdbc")
.option("url", dbUrl)
.option("databaseName", "testdb")
.option("dbtable", "tablename")
.option("user", "username")
.option("password", "*****")
.option("driver","com.mysql.jdbc.Driver")
.option("partitionColumn", partitionColumn)
.option("lowerBound", lowerBound)
.option("upperBound", upperBound)
.option("numPartitions", 20)
.load()
Got this error,
java.lang.NullPointerException
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRDD$.resolveTable(JDBCRDD.scala:72)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRelation.<init>(JDBCRelation.scala:114)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcRelationProvider.createRelation(JdbcRelationProvider.scala:52)
at org.apache.spark.sql.execution.datasources.DataSource.resolveRelation(DataSource.scala:307)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:178)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:146)
... 58 elided
Trial 3,
import java.util.Properties
val table = "tablename"
val url = "jdbc:mysql://our-host.readm.co.nz"
val prop = new Properties()
prop.put("driver","com.mysql.jdbc.Driver")
prop.put("user","username")
prop.put("password","****")
prop.put("databaseName","testdb")
val jdbcDF = spark.read.jdbc(url,
table,
prop)
Getting this error,
java.lang.NullPointerException
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRDD$.resolveTable(JDBCRDD.scala:72)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRelation.<init>(JDBCRelation.scala:114)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcRelationProvider.createRelation(JdbcRelationProvider.scala:52)
at org.apache.spark.sql.execution.datasources.DataSource.resolveRelation(DataSource.scala:307)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:178)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:146)
at org.apache.spark.sql.DataFrameReader.jdbc(DataFrameReader.scala:193)
... 58 elided
Not sure whats wrong here, can any help me? Thanks.
EDIT:- This is what I am getting after trying the answer given by #geo
com.mysql.jdbc.CommunicationsException: Communications link failure due to underlying exception:
** BEGIN NESTED EXCEPTION **
java.net.SocketException
MESSAGE: java.net.ConnectException: Connection timed out (Connection timed out)
STACKTRACE:
java.net.SocketException: java.net.ConnectException: Connection timed out (Connection timed out)
at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:156)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:276)
at com.mysql.jdbc.Connection.createNewIO(Connection.java:2666)
at com.mysql.jdbc.Connection.<init>(Connection.java:1531)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:266)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$1.apply(JdbcUtils.scala:61)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$1.apply(JdbcUtils.scala:52)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRDD$.resolveTable(JDBCRDD.scala:58)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRelation.<init>(JDBCRelation.scala:114)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcRelationProvider.createRelation(JdbcRelationProvider.scala:52)
at org.apache.spark.sql.execution.datasources.DataSource.resolveRelation(DataSource.scala:307)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:178)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:146)
at <init>(<console>:40)
at <init>(<console>:45)
at <init>(<console>:47)
at <init>(<console>:49)
at <init>(<console>:51)
at <init>(<console>:53)
at <init>(<console>:55)
at <init>(<console>:57)
at <init>(<console>:59)
at <init>(<console>:61)
at <init>(<console>:63)
at <init>(<console>:65)
at <init>(<console>:67)
at .<init>(<console>:71)
at .<clinit>(<console>)
at .$print$lzycompute(<console>:7)
at .$print(<console>:6)
at $print(<console>)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at scala.tools.nsc.interpreter.IMain$ReadEvalPrint.call(IMain.scala:786)
at scala.tools.nsc.interpreter.IMain$Request.loadAndRun(IMain.scala:1047)
at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:638)
at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:637)
at scala.reflect.internal.util.ScalaClassLoader$class.asContext(ScalaClassLoader.scala:31)
at scala.reflect.internal.util.AbstractFileClassLoader.asContext(AbstractFileClassLoader.scala:19)
at scala.tools.nsc.interpreter.IMain$WrappedRequest.loadAndRunReq(IMain.scala:637)
at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:569)
at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:565)
at sun.reflect.GeneratedMethodAccessor340.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.zeppelin.spark.Utils.invokeMethod(Utils.java:38)
at org.apache.zeppelin.spark.SparkInterpreter.interpret(SparkInterpreter.java:1000)
at org.apache.zeppelin.spark.SparkInterpreter.interpretInput(SparkInterpreter.java:1205)
at org.apache.zeppelin.spark.SparkInterpreter.interpret(SparkInterpreter.java:1172)
at org.apache.zeppelin.spark.SparkInterpreter.interpret(SparkInterpreter.java:1165)
at org.apache.zeppelin.interpreter.LazyOpenInterpreter.interpret(LazyOpenInterpreter.java:97)
at org.apache.zeppelin.interpreter.remote.RemoteInterpreterServer$InterpretJob.jobRun(RemoteInterpreterServer.java:498)
at org.apache.zeppelin.scheduler.Job.run(Job.java:175)
at org.apache.zeppelin.scheduler.FIFOScheduler$1.run(FIFOScheduler.java:139)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
** END NESTED EXCEPTION **
Last packet sent to the server was 7 ms ago.
at com.mysql.jdbc.Connection.createNewIO(Connection.java:2741)
at com.mysql.jdbc.Connection.<init>(Connection.java:1531)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:266)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$1.apply(JdbcUtils.scala:61)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$createConnectionFactory$1.apply(JdbcUtils.scala:52)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRDD$.resolveTable(JDBCRDD.scala:58)
at org.apache.spark.sql.execution.datasources.jdbc.JDBCRelation.<init>(JDBCRelation.scala:114)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcRelationProvider.createRelation(JdbcRelationProvider.scala:52)
at org.apache.spark.sql.execution.datasources.DataSource.resolveRelation(DataSource.scala:307)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:178)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:146)
... 50 elided
Assuming the JDBC interpreter works without any problems in Zeppelin, this is what worked for me:
// DB connection
val options = Map(
"url" -> "jdbc:mysql://localhost:3306/dbname",
"dbtable" -> "dbtable",
"user" -> "user",
"password" -> "password"
)
val data = spark
.read
.format("jdbc")
.options(options)
.load
It goes without saying that there should be a mysql process running at localhost:3306 (or wherever you are hosting the DB) and that the firewall/iptables allows you in/out access to/from that process.
How is your cluster setup? firewall rules etc.? Is mysqld running? Anyway it looks more like a connection issue than a problem with the JDBC driver. Therefore I would recommed: try to connect to MySQL from the host that zepplin is running on via bash

AWS RDS How to set up a MySQL Database

I have a Java application running on successfully on Amazon Web Services Elastic Beanstalk.
I am trying to set up MySQL. I have created a DB Instance as you can see:
Question 1:
How do I connect my Java App to the Database?
I have the following code (after viewing this):
#Bean
public DataSource dataSource() {
// Openshift
// String host = System.getenv("OPENSHIFT_MYSQL_DB_HOST");
// String port = System.getenv("OPENSHIFT_MYSQL_DB_PORT");
// String username = System.getenv("OPENSHIFT_MYSQL_DB_USERNAME");
// String password = System.getenv("OPENSHIFT_MYSQL_DB_PASSWORD");
// AWS
String host = System.getenv("RDS_HOSTNAME");
String port = System.getenv("RDS_PORT");
String username = System.getenv("RDS_USERNAME");
String password = System.getenv("RDS_PASSWORD");
String dbname = System.getenv("RDS_DB_NAME");
DriverManagerDataSource dataSource = new DriverManagerDataSource();
dataSource.setDriverClassName(environment.getRequiredProperty("jdbc.driverClassName"));
if (host == null) {
dataSource.setUrl(environment.getRequiredProperty("jdbc.url"));
dataSource.setUsername(environment.getRequiredProperty("jdbc.username"));
dataSource.setPassword(environment.getRequiredProperty("jdbc.password"));
} else {
//dataSource.setUrl("jdbc:mysql://" + host + ":" + port + "/");
// Openshift
//dataSource.setUrl("jdbc:mysql://" + host + ":" + port + "/" + environment.getRequiredProperty("jdbc.dbname"));
// AWS
dataSource.setUrl("jdbc:mysql://" + host + ":" + port + "/" + dbname);
dataSource.setUsername(username);
dataSource.setPassword(password);
System.out.println("jdbc:mysql://" + host + ":" + port + "/" + dbname+", username: "+username+", password: "+password);
}
return dataSource;
}
(p.s. the commented out code works on OpenShifts server)
But I get the following:
org.springframework.web.util.NestedServletException: Request
processing failed; nested exception is
org.springframework.transaction.CannotCreateTransactionException:
Could not open JPA EntityManager for transaction; nested exception is
org.hibernate.exception.JDBCConnectionException: Unable to acquire
JDBC Connection
org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:982)
Question 2:
From an existing database, in MySQL Workbench, I have exported sql scripts to create a schema and tables, and then populate them. How do I import this into the AWS RDS MySQL database?
More info:
Server Logs:
-------------------------------------
/var/log/tomcat8/localhost.2017-02-21.log
-------------------------------------
21-Feb-2017 14:42:51.133 INFO [localhost-startStop-1] org.apache.catalina.core.ApplicationContext.log 1 Spring WebApplicationInitializers detected on classpath
21-Feb-2017 14:42:51.737 INFO [localhost-startStop-1] org.apache.catalina.core.ApplicationContext.log Initializing Spring FrameworkServlet 'rest'
21-Feb-2017 14:57:36.680 SEVERE [http-nio-8080-exec-7] org.apache.catalina.core.StandardWrapperValve.invoke Servlet.service() for servlet [rest] in context with path [] threw exception [Request processing failed; nested exception is org.springframework.transaction.CannotCreateTransactionException: Could not open JPA EntityManager for transaction; nested exception is org.hibernate.exception.JDBCConnectionException: Unable to acquire JDBC Connection] with root cause
java.net.ConnectException: Connection refused (Connection refused)
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at java.net.Socket.connect(Socket.java:538)
at java.net.Socket.<init>(Socket.java:434)
at java.net.Socket.<init>(Socket.java:244)
at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:258)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:306)
at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2504)
at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2541)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2323)
at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:832)
at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:46)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:408)
at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:417)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:344)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:208)
at org.springframework.jdbc.datasource.DriverManagerDataSource.getConnectionFromDriverManager(DriverManagerDataSource.java:153)
at org.springframework.jdbc.datasource.DriverManagerDataSource.getConnectionFromDriver(DriverManagerDataSource.java:144)
at org.springframework.jdbc.datasource.AbstractDriverBasedDataSource.getConnectionFromDriver(AbstractDriverBasedDataSource.java:155)
at org.springframework.jdbc.datasource.AbstractDriverBasedDataSource.getConnection(AbstractDriverBasedDataSource.java:120)
at org.hibernate.engine.jdbc.connections.internal.DatasourceConnectionProviderImpl.getConnection(DatasourceConnectionProviderImpl.java:122)
at org.hibernate.internal.NonContextualJdbcConnectionAccess.obtainConnection(NonContextualJdbcConnectionAccess.java:35)
at org.hibernate.resource.jdbc.internal.LogicalConnectionManagedImpl.acquireConnectionIfNeeded(LogicalConnectionManagedImpl.java:99)
at org.hibernate.resource.jdbc.internal.LogicalConnectionManagedImpl.getPhysicalConnection(LogicalConnectionManagedImpl.java:129)
at org.hibernate.resource.jdbc.internal.LogicalConnectionManagedImpl.getConnectionForTransactionManagement(LogicalConnectionManagedImpl.java:247)
at org.hibernate.resource.jdbc.internal.LogicalConnectionManagedImpl.begin(LogicalConnectionManagedImpl.java:254)
at org.hibernate.resource.transaction.backend.jdbc.internal.JdbcResourceLocalTransactionCoordinatorImpl$TransactionDriverControlImpl.begin(JdbcResourceLocalTransactionCoordinatorImpl.java:203)
at org.hibernate.engine.transaction.internal.TransactionImpl.begin(TransactionImpl.java:56)
at org.springframework.orm.jpa.DefaultJpaDialect.beginTransaction(DefaultJpaDialect.java:67)
at org.springframework.orm.jpa.JpaTransactionManager.doBegin(JpaTransactionManager.java:380)
at org.springframework.transaction.support.AbstractPlatformTransactionManager.getTransaction(AbstractPlatformTransactionManager.java:373)
at org.springframework.transaction.interceptor.TransactionAspectSupport.createTransactionIfNecessary(TransactionAspectSupport.java:427)
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:276)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
at com.sun.proxy.$Proxy55.findAll(Unknown Source)
at com.jobs.spring.controller.CategoryRESTService.findAllCategorys(CategoryRESTService.java:31)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:221)
at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:136)
at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:114)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:827)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:738)
at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:963)
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:897)
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:970)
at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:861)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:622)
at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:846)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:729)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:292)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:240)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:212)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:141)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79)
at org.apache.catalina.valves.RemoteIpValve.invoke(RemoteIpValve.java:676)
at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:616)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:509)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1104)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:684)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1520)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1476)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
21-Feb-2017 15:09:21.090 INFO [localhost-startStop-2] org.apache.catalina.core.ApplicationContext.log Destroying Spring FrameworkServlet 'rest'
21-Feb-2017 15:09:38.729 INFO [localhost-startStop-1] org.apache.catalina.core.ApplicationContext.log 1 Spring WebApplicationInitializers detected on classpath
21-Feb-2017 15:09:39.329 INFO [localhost-startStop-1] org.apache.catalina.core.ApplicationContext.log Initializing Spring FrameworkServlet 'rest'
UPDATE
I also added rules to open it for everyone, but still get the same error:
The problem has to do with your database and the security group.
Hover to the "i" icon next to the Cluster Endpoint.
A popup will appear with the security groups.
Hit the first default link and you will be redirected to the security groups configuration.
Then you have to edit the security group and add an inbound rule in order to include your local ip.
Keep in mind that this will work only if your rds is on a public subnet.
This link is pretty helpful for troubleshooting.
More information on security groups

Hibernate Null Pointer on save object

So I'm running a springboot application and when I run on OSX I get a null pointer. When I run the same application on a ubuntu vm it works just fine, as well as someone else OSX computer. I can't figure out what would cause this. I have tried forcing maven to re-download the hibernate library but it made no change. The model extends JPARepository, and has appropriate mappings. I'm able to create the tables, as well as read from the db, just not write to it. Not sure what code might be relevant.
Hibernate: insert into Organization (version, date_created, last_updated, name, org_id) values (?, ?, ?, ?, ?)
java.lang.NullPointerException
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.handleAndClearWarnings(SqlExceptionHelper.java:320)
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.logAndClearWarnings(SqlExceptionHelper.java:273)
at org.hibernate.engine.jdbc.internal.JdbcCoordinatorImpl.close(JdbcCoordinatorImpl.java:529)
at org.hibernate.engine.jdbc.internal.JdbcCoordinatorImpl.release(JdbcCoordinatorImpl.java:421)
at org.hibernate.id.insert.AbstractReturningDelegate.releaseStatement(AbstractReturningDelegate.java:82)
at org.hibernate.id.insert.AbstractReturningDelegate.performInsert(AbstractReturningDelegate.java:61)
at org.hibernate.persister.entity.AbstractEntityPersister.insert(AbstractEntityPersister.java:3032)
at org.hibernate.persister.entity.AbstractEntityPersister.insert(AbstractEntityPersister.java:3558)
at org.hibernate.action.internal.EntityIdentityInsertAction.execute(EntityIdentityInsertAction.java:98)
at org.hibernate.engine.spi.ActionQueue.execute(ActionQueue.java:492)
at org.hibernate.engine.spi.ActionQueue.addResolvedEntityInsertAction(ActionQueue.java:197)
at org.hibernate.engine.spi.ActionQueue.addInsertAction(ActionQueue.java:181)
at org.hibernate.engine.spi.ActionQueue.addAction(ActionQueue.java:216)
at org.hibernate.event.internal.AbstractSaveEventListener.addInsertAction(AbstractSaveEventListener.java:334)
at org.hibernate.event.internal.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:289)
at org.hibernate.event.internal.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:195)
at org.hibernate.event.internal.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:126)
at org.hibernate.jpa.event.internal.core.JpaPersistEventListener.saveWithGeneratedId(JpaPersistEventListener.java:84)
at org.hibernate.event.internal.DefaultPersistEventListener.entityIsTransient(DefaultPersistEventListener.java:206)
at org.hibernate.event.internal.DefaultPersistEventListener.onPersist(DefaultPersistEventListener.java:149)
at org.hibernate.event.internal.DefaultPersistEventListener.onPersist(DefaultPersistEventListener.java:75)
at org.hibernate.internal.SessionImpl.firePersist(SessionImpl.java:811)
at org.hibernate.internal.SessionImpl.persist(SessionImpl.java:784)
at org.hibernate.internal.SessionImpl.persist(SessionImpl.java:789)
at org.hibernate.jpa.spi.AbstractEntityManagerImpl.persist(AbstractEntityManagerImpl.java:1181)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.springframework.orm.jpa.ExtendedEntityManagerCreator$ExtendedEntityManagerInvocationHandler.invoke(ExtendedEntityManagerCreator.java:344)
at com.sun.proxy.$Proxy89.persist(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.springframework.orm.jpa.SharedEntityManagerCreator$SharedEntityManagerInvocationHandler.invoke(SharedEntityManagerCreator.java:291)
at com.sun.proxy.$Proxy89.persist(Unknown Source)
at org.springframework.data.jpa.repository.support.SimpleJpaRepository.save(SimpleJpaRepository.java:433)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.executeMethodOn(RepositoryFactorySupport.java:436)
at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.doInvoke(RepositoryFactorySupport.java:421)
at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.invoke(RepositoryFactorySupport.java:393)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.data.repository.core.support.RepositoryFactorySupport$DefaultMethodInvokingMethodInterceptor.invoke(RepositoryFactorySupport.java:506)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:136)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.data.jpa.repository.support.CrudMethodMetadataPostProcessor$CrudMethodMetadataPopulatingMethodIntercceptor.invoke(CrudMethodMetadataPostProcessor.java:122)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
at com.sun.proxy.$Proxy103.save(Unknown Source)
at com.<COMPANY>.<PACKAGE>.DevelopmentDataBootstrap.doBootstrap(DevelopmentDataBootstrap.java:47)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:349)
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:300)
at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:133)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:408)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1564)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:539)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:303)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:299)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:194)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:755)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:759)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480)
at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.refresh(EmbeddedWebApplicationContext.java:117)
at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:689)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:321)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:969)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:958)
at com.<COMPANY>.<PACKAGE>.SDKPortalApplication.main(SDKPortalApplication.java:22)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.springframework.boot.loader.MainMethodRunner.run(MainMethodRunner.java:53)
at java.lang.Thread.run(Thread.java:745)
Your insert SQL statement seems to be throwing a warning or not properly performing in the OSX system. Your stack trace points to this line of code in the Hibernate version (4.3.11.Final) used in your Spring Boot. That's the whole failing method:
#SuppressWarnings({"ThrowableResultOfMethodCallIgnored"})
public void handleAndClearWarnings(
Statement statement,
WarningHandler handler) {
// See HHH-9174. Statement#getWarnings can be an expensive call for many JDBC libs. Don't do it unless
// the log level would actually allow a warning to be logged.
if (LOG.isEnabled(Level.WARN)) {
try {
walkWarnings( statement.getWarnings(), handler );
}
catch (SQLException sqlException) {
// workaround for WebLogic
LOG.debug( "could not log warnings", sqlException );
}
}
try {
// Sybase fail if we don't do that, sigh...
statement.clearWarnings();
}
catch (SQLException sqle) {
LOG.debug( "could not clear warnings", sqle );
}
}
You are getting the NullPointerException in statement.getWarnings(), which suggests statement reaches with null value. You should verify your database versions in both systems and check your schemes match in.
Anyway, Hibernate should handle a possible null value here, from my point of view.

After a long idle server throws error 'Could not open JPA EntityManager for transaction' in spring-boot-starter-data-jpa with Mysql

After a long idle server without accessing the database, error occurs.
My build script:
springBootVersion = '1.3.0.M1'
"org.springframework.boot:spring-boot-starter-thymeleaf:${springBootVersion}",
"org.springframework.boot:spring-boot-starter-web:${springBootVersion}",
"org.springframework.boot:spring-boot-starter-data-jpa:${springBootVersion}",
"org.springframework.boot:spring-boot-devtools",
"mysql:mysql-connector-java:5.1.32"
application.properties:
spring.jpa.hibernate.ddl-auto=create-drop
spring.jpa.hibernate.naming-strategy=org.hibernate.cfg.ImprovedNamingStrategy
Stack Trace:
2015-06-22 06:22:45.109 ERROR 21982 --- [nio-8082-exec-4] o.a.c.c.C.[.[.[/].[dispatcherServlet] : Servlet.service() for servlet [dispatcherServlet] in context with path [] threw exception [Request processing failed; nested exception is org.springframework.transaction.CannotCreateTransactionException: Could not open JPA EntityManager for transaction; nested exception is javax.persistence.PersistenceException: org.hibernate.TransactionException: JDBC begin transaction failed: ] with root cause
java.net.SocketException: Broken pipe
at java.net.SocketOutputStream.socketWrite0(Native Method)
at java.net.SocketOutputStream.socketWrite(SocketOutputStream.java:109)
at java.net.SocketOutputStream.write(SocketOutputStream.java:153)
at java.io.BufferedOutputStream.flushBuffer(BufferedOutputStream.java:82)
at java.io.BufferedOutputStream.flush(BufferedOutputStream.java:140)
at com.mysql.jdbc.MysqlIO.send(MysqlIO.java:3946)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2578)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2758)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2820)
at com.mysql.jdbc.ConnectionImpl.setReadOnlyInternal(ConnectionImpl.java:5510)
at com.mysql.jdbc.ConnectionImpl.setReadOnly(ConnectionImpl.java:5503)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.apache.tomcat.jdbc.pool.ProxyConnection.invoke(ProxyConnection.java:126)
at org.apache.tomcat.jdbc.pool.JdbcInterceptor.invoke(JdbcInterceptor.java:108)
at org.apache.tomcat.jdbc.pool.DisposableConnectionFacade.invoke(DisposableConnectionFacade.java:81)
at com.sun.proxy.$Proxy53.setReadOnly(Unknown Source)
at org.springframework.jdbc.datasource.DataSourceUtils.prepareConnectionForTransaction(DataSourceUtils.java:155)
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.beginTransaction(HibernateJpaDialect.java:154)
at org.springframework.orm.jpa.JpaTransactionManager.doBegin(JpaTransactionManager.java:380)
at org.springframework.transaction.support.AbstractPlatformTransactionManager.getTransaction(AbstractPlatformTransactionManager.java:373)
at org.springframework.transaction.interceptor.TransactionAspectSupport.createTransactionIfNecessary(TransactionAspectSupport.java:427)
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:276)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:136)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.data.jpa.repository.support.CrudMethodMetadataPostProcessor$CrudMethodMetadataPopulatingMethodInterceptor.invoke(CrudMethodMetadataPostProcessor.java:121)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
at com.sun.proxy.$Proxy71.findAll(Unknown Source)
at org.springframework.data.jpa.repository.JpaRepository$findAll.call(Unknown Source)
at edu.netc.service.impl.StudentServiceImpl.findAll(StudentServiceImpl.groovy:21)
at edu.netc.service.StudentService$findAll.call(Unknown Source)
at edu.netc.controllers.StudentController.getAll(StudentController.groovy:35)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:221)
at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:137)
at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:111)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandleMethod(RequestMappingHandlerAdapter.java:799)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:728)
at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)
at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:860)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:622)
at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:729)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:291)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.springframework.web.filter.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:77)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:85)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:219)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:668)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1521)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1478)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
My ApplicationClass:
#SpringBootApplication
#EnableAutoConfiguration
#ComponentScan(basePackages = "")
#EnableJpaRepositories(basePackages = "")
#EnableTransactionManagement
public class EduCenterApplication {
public static void main(String[] args) {
SpringApplication.run(EduCenterApplication.class, args);
}
}
I found a solution to this problem by specifying additional parameters, such as:
hibernate.c3p0.idle_test_period = 100
hibernate.c3p0.timeout = 200
I'm not sure that they will help me.
Please tell me what the best solution to avoid this error,
Thanks in advance!
Solution:
spring.datasource.test-on-borrow=true
spring.datasource.validation-query=SELECT 1
This is what I have used to resolve this issue.
spring.datasource.testOnBorrow: true
spring.datasource.validationQuery: SELECT 1
I had:
spring.jpa.hibernate.ddl-auto=update
And I changed to
spring.jpa.hibernate.ddl-auto=none
And voila.

JDBC, servlets and strange "No operations allowed after connection closed"

I have a servlet which put data to remote MySQL Database. From servlet I call post which run method, which connect to database, make operations on the table and close all resource. But, during prefom this, occur the "No operations allowed after connection closed. ". But if comment close methods on all resources, all works fine, and the database is update.
Below i present my code where I change the name of my object and error log:
public class MySqlManager {
Logger logger = Logger.getLogger("MySqlManager");
private Connection sqlConnection;
public Connection getConnenction() throws SQLException{
sqlConnection = DriverManager.getConnection(DataConstants.dbUrl, DataConstants.dbName, DataConstants.password);
return sqlConnection;
}
public MySqlManager() {
DriverManager.setLogWriter(new PrintWriter(System.out));
}
public void putData(String value1, String value2, String value3) throws SQLException{
Connection sqlConn = null;
Statement statement = null;
ResultSet resultSet = null;
PreparedStatement preparedStatement = null;
try {
//register for MySQL driver
Class.forName("com.mysql.jdbc.Driver").
//get connection for data base
sqlConn = getConnenction();
logger.info("Connect to database");
int id;
//create a statement which gets data from database
statement = sqlConn.createStatement();
//if exist row in column sec_id, get id of this row
String idQuery = "SELECT id FROM table1 WHERE sec_id = \'" + value3 + "\'";
logger.info("query=" + idQuery);
resultSet = statement.executeQuery(idQuery);
if(resultSet.next()){
//if row exist, update data in this row
id = resultSet.getInt("id");
preparedStatement = sqlConn.prepareStatement("UPDATE table1 SET col2 = ?, col2 = ?, col3 = ?, col4 = ? WHERE id = ?");
preparedStatement.setString(1, "some_tekst");
preparedStatement.setLong(2, 90854924897293);
preparedStatement.setString(3, "some_tekst");
preparedStatement.setString(4, "some_tekst"));
preparedStatement.setInt(5, id);
int i = preparedStatement.executeUpdate();
logger.info("Update " + i + " record");
}else{
//if row not exist, insert data to table1
preparedStatement = sqlConn.prepareStatement("INSERT INTO table1 (col2, col3, col4, col5, col6, col7, col8) VALUES (?, ?, ?, ?, ?, ?, ?)");
preparedStatement.setString(1, "some_tekst");
preparedStatement.setLong(2, 9146517234571);
preparedStatement.setString(3, "some_tekst");
preparedStatement.setString(4, "some_tekst");
preparedStatement.setInt(5, 0);
preparedStatement.setString(6, "some_tekst"));
preparedStatement.setString(7, "some_tekst"));
int i = preparedStatement.executeUpdate();
logger.info("Insert " + i + " record");
}
} catch (SQLException ex) {
Logger.getLogger(MySqlManager.class.getName()).log(Level.SEVERE, null, ex);
} catch (ClassNotFoundException ex) {
Logger.getLogger(MySqlManager.class.getName()).log(Level.SEVERE, null, ex);
} catch (InstantiationException ex) {
Logger.getLogger(MySqlManager.class.getName()).log(Level.SEVERE, null, ex);
} catch (IllegalAccessException ex) {
Logger.getLogger(MySqlManager.class.getName()).log(Level.SEVERE, null, ex);
}finally{
/*if I close all resources which has been defined above, I have an error:
SQLState(S1000) vendor code(0)
java.sql.SQLException: Operation not allowed after ResultSet closed
if I comment code below, all works fine, and database is update
*/
try { resultSet.close();} catch (Exception e) {}
try { statement.close();} catch (Exception e) {}
try { preparedStatement.close();} catch (Exception e) {}
try { closeConnection();} catch (Exception e) {}
}
}
public synchronized final void closeConnection() throws SQLException{
sqlConnection.close();
sqlConnection = null;
}
}
lis 21, 2014 12:56:32 PM com.test.database.MySqlManager putData
INFO: Connect to database
lis 21, 2014 12:56:32 PM com.test.database.MySqlManager putData
SEVERE: null
com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException: No operations allowed after connection closed.
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.Util.getInstance(Util.java:386)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1014)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:988)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:974)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:919)
at com.mysql.jdbc.ConnectionImpl.throwConnectionClosedException(ConnectionImpl.java:1290)
at com.mysql.jdbc.ConnectionImpl.checkClosed(ConnectionImpl.java:1282)
at com.mysql.jdbc.ConnectionImpl.createStatement(ConnectionImpl.java:2653)
at com.mysql.jdbc.ConnectionImpl.createStatement(ConnectionImpl.java:2635)
at com.test.database.MySqlManager.putData(MySqlManager.java:33)
at com.test.database.SmackCcsClient.updateDB(SmackCcsClient.java:289)
at com.test.database.GCMNotification.doPost(GCMNotification.java:89)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:646)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:503)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:421)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1070)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:611)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:314)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
SQLState(08003) vendor code(0)
EDIT:
Error log when it occur during getConnection()
DriverManager.getConnection("jdbc:mysql://mysql-testhost:3306/dbname")
trying sun.jdbc.odbc.JdbcOdbcDriver
*Driver.connect (jdbc:mysql://mysql-testhost:3306/dbname)
trying com.mysql.jdbc.Driver
SQLState(S1000) vendor code(0)
java.sql.SQLException: Operation not allowed after ResultSet closed
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1074)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:988)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:974)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:919)
at com.mysql.jdbc.ResultSetImpl.checkClosed(ResultSetImpl.java:804)
at com.mysql.jdbc.ResultSetImpl.realClose(ResultSetImpl.java:7331)
at com.mysql.jdbc.StatementImpl.executeQuery(StatementImpl.java:1527)
at com.mysql.jdbc.ConnectionImpl.loadServerVariables(ConnectionImpl.java:4156)
at com.mysql.jdbc.ConnectionImpl.initializePropsFromServer(ConnectionImpl.java:3548)
at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2513)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2283)
at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:822)
at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:404)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:317)
at java.sql.DriverManager.getConnection(DriverManager.java:571)
at java.sql.DriverManager.getConnection(DriverManager.java:215)
at com.test.database.MySqlManager.getConnenction(MySqlManager.java:8)
at com.test.database.MySqlManager.putData(MySqlManager.java:52)
at com.test.database.SmackCcsClient.updateDB(SmackCcsClient.java:289)
at com.test.database.GCMNotification.doPost(GCMNotification.java:89)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:646)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:503)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:421)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1070)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:611)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
SQLState(S1000) vendor code(0)
java.sql.SQLException: Operation not allowed after ResultSet closed
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1074)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:988)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:974)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:919)
at com.mysql.jdbc.ResultSetImpl.checkClosed(ResultSetImpl.java:804)
at com.mysql.jdbc.ResultSetImpl.realClose(ResultSetImpl.java:7331)
at com.mysql.jdbc.ResultSetImpl.close(ResultSetImpl.java:923)
at com.mysql.jdbc.StatementImpl.realClose(StatementImpl.java:2590)
at com.mysql.jdbc.StatementImpl.close(StatementImpl.java:582)
at com.mysql.jdbc.ConnectionImpl.loadServerVariables(ConnectionImpl.java:4188)
at com.mysql.jdbc.ConnectionImpl.initializePropsFromServer(ConnectionImpl.java:3548)
at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2513)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2283)
at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:822)
at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:404)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:317)
at java.sql.DriverManager.getConnection(DriverManager.java:571)
at java.sql.DriverManager.getConnection(DriverManager.java:215)
at com.test.database.MySqlManager.getConnenction(MySqlManager.java:8)
at com.test.database.MySqlManager.putData(MySqlManager.java:52)
at com.test.database.SmackCcsClient.updateDB(SmackCcsClient.java:289)
at com.test.database.GCMNotification.doPost(GCMNotification.java:89)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:646)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:503)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:421)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1070)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:611)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
SQLState(S1000) vendor code(0)
java.sql.SQLException: Operation not allowed after ResultSet closed
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1074)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:988)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:974)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:919)
at com.mysql.jdbc.ResultSetImpl.checkClosed(ResultSetImpl.java:804)
at com.mysql.jdbc.ResultSetImpl.realClose(ResultSetImpl.java:7331)
at com.mysql.jdbc.ResultSetImpl.close(ResultSetImpl.java:923)
at com.mysql.jdbc.StatementImpl.realClose(StatementImpl.java:2590)
at com.mysql.jdbc.StatementImpl.close(StatementImpl.java:582)
at com.mysql.jdbc.ConnectionImpl.buildCollationMapping(ConnectionImpl.java:1076)
at com.mysql.jdbc.ConnectionImpl.initializePropsFromServer(ConnectionImpl.java:3556)
at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2513)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2283)
at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:822)
at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:404)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:317)
at java.sql.DriverManager.getConnection(DriverManager.java:571)
at java.sql.DriverManager.getConnection(DriverManager.java:215)
at com.test.database.MySqlManager.getConnenction(MySqlManager.java:8)
at com.test.database.MySqlManager.putData(MySqlManager.java:52)
at com.test.database.SmackCcsClient.updateDB(SmackCcsClient.java:289)
at com.test.database.GCMNotification.doPost(GCMNotification.java:89)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:646)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:503)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:421)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1070)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:611)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
SQLState(S1000) vendor code(0)
java.sql.SQLException: Operation not allowed after ResultSet closed
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1074)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:988)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:974)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:919)
at com.mysql.jdbc.ResultSetImpl.checkClosed(ResultSetImpl.java:804)
at com.mysql.jdbc.ResultSetImpl.realClose(ResultSetImpl.java:7331)
at com.mysql.jdbc.ResultSetImpl.close(ResultSetImpl.java:923)
at com.mysql.jdbc.StatementImpl.realClose(StatementImpl.java:2590)
at com.mysql.jdbc.StatementImpl.close(StatementImpl.java:582)
at com.mysql.jdbc.ConnectionImpl.isAutoCommitNonDefaultOnServer(ConnectionImpl.java:3798)
at com.mysql.jdbc.ConnectionImpl.initializePropsFromServer(ConnectionImpl.java:3644)
at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2513)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2283)
at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:822)
at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:404)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:317)
at java.sql.DriverManager.getConnection(DriverManager.java:571)
at java.sql.DriverManager.getConnection(DriverManager.java:215)
at com.test.database.MySqlManager.getConnenction(MySqlManager.java:8)
at com.test.database.MySqlManager.putData(MySqlManager.java:52)
at com.test.database.SmackCcsClient.updateDB(SmackCcsClient.java:289)
at com.test.database.GCMNotification.doPost(GCMNotification.java:89)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:646)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:503)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:421)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1070)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:611)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
getConnection returning com.mysql.jdbc.Driver
Remove static modifier from sqlConnection object and getConnection() . it will work fine. The reason you get exception is this, by using static modifier you are creating a single connection object for all the objects of this class. If you close it once you are closing for all the servlets.
EDIT:
As discussed with david90 , the guy who asked this question, his problem was solved by changing the version of MySQL driver. from 5.1.24 to 5.1.34
Calling ResultSet.close() on an already closed ResultSet caused an SQLException.
Problem Exists in MySQL driver 5.1.24, while 5.1.34 fixed it.
Calling ResultSet.close() on an already closed ResultSet caused an SQLException. While the exception was silently discarded, it did result in performance issues. This fix makes Connector/J comply with the Java specification that when a ResultSet object is already closed, application of the close method on it should be a no-op. (Bug #16722637, Bug #67318)
Your code isn't thread-safe. sqlConnection should be a local variable everywhere, and never an instance or static member. Ditto the Statement and ResultSet variables.