Turtles with size in Netlogo - gis

I need to create turtles that have a certain dimension and check for overlap.
Since turtles per definition have no extension, I thought maybe the gis extension could be useful.
There is a way of associating an envelope with a turtle like
let gis:envelope-of self (list (xcor - 2 ) (xcor + 2) (ycor - 2) (ycor + 2))
But I don't know how to use this to draw the envelope and to check for overlaps.
Another way could be to give up the idea of one turtle having dimensions and to create a gis dataset from turtles by using
gis:turtle-dataset turtle-set
But I don't know how to create a polygon with this :-(
Any ideas?

Updated for Seth's comment to make explicit the different approaches for circles and others.
If the turtles are circles, then there is an overlap if the sum of the sizes of the two turtles < distance between them / 2, using the distance primitive as in Seth's comment.
However, if you have squares or other shapes, then you will have to do some fancy stuff with heading and the various trigonometry functions, and will need the differences of positions in the x and y direction (differences in xcor and ycor respectively. Something like this will get you started:
to-report xdiff [ turt1 turt2 ]
report [xcor] of turt1 - [xcor] of turt2
end

In the end I took an easy way out:
Since my objects don't have to move, I use adjacent patches to form a block of the needed size. Before I occupy a new patch, I check if it is already used and if so I delete all newly occupied patches.
Not very versatily, but it does the job for me so far.

Related

How contrastive loss work intuitively in siamese network

I am having issue in getting clear concept of contrastive loss used in siamese network.
Here is pytorch formula
torch.mean((1-label) * torch.pow(euclidean_distance, 2) +
(label) * torch.pow(torch.clamp(margin - euclidean_distance, min=0.0), 2))
where margin=2.
If we convert this to equation format, it can be written as
(1-Y)*D^2 + Y* max(m-d,0)^2
Y=0, if both images are from same class
Y=1, if both images are from different class
What i think, if images are from same class the distance between embedding should decrease. and if images are from different class, the distance should increase.
I am unable to map this concept to contrastive loss.
Let say, if Y is 1 and distance value is larger, the first part become zero (1-Y), and second also become zero, because it should choose whether m-d or 0 is bigger.
So the loss is zero which does not make sense.
Can you please help me to understand this
If the distance of a negative sample is greater than the specified margin, it should be already separable from a positive sample. Therefore, there is no benefit in pushing it farther away.
For details please check this blog post, where the concept of "Equilibrium" gets explained and why the Contrastive Loss makes reaching this point easier.

center of a cluster of points and track shape

I have plots of points which look like this.
The tracks which these points form can be a circle or an ellipse. Clearly the center of the circular tracks in the two images above are different.
How can I find the center point of these tracks (circular/elliptical)? I want to find the (x,y) coordinates which is the center, not necessary that it has to be a point that's in the plotted data set. i.e., I don't want a medoid.
EDIT: Also, is there anyway that I can find an equation for circle/ellipse that envelopes a majority of these points? In the elliptical track, I've added an ellipse that envelopes the points on the track. The values were calculated by trial and error. The center was also calculated by eye balling the plot. How can I do this programmatically?
Smallest circle problem and the here is a paper (PDF download available) on the smallest ellipse problem. Both have O(N) algorithms and should be able to provide the formula for the circle and area from which you can get the center. However, they focus on enclosing all of the points. To solve that issue you'll need to remove some a number of the bounding points, which you should get from the algorithms as well. Unfortunately, it's pretty much up to you as to what qualifies as a good enough solution.
A fast and simple randomized solution is:
Randomly divide the set of points into k sets of N/k points each.
Run the smallest circle/ellipse algorithm for each set
For each of the k sets, pick at least 1 but no more m bounding points to remove from main point set.
Return to step 1, t times.
Return the result of the circle/ellipse algorithm on remaining points.
The algorithm removes between k and mk bounding points every pass at a cost of O(N). For your purpose you'll probably want to remove some percentage of the bounding points, 1-25% seems like a good starting point. This solution assumes that k is very small compared to N, otherwise you'll be removing too many points.
A slower but likely better algorithm is useful in the case that you want to repeated remove one or all of the bounding point from the smallest elipse, recalculate the smallest ellipse, then remove the bounding points again.
You can do this by having the parent node be the bounding points (points stored as a set for easy for faster removal) of the smallest enclosing ellipse of it's children. The maximum number of bounding points should be no more than k (which I'm thinking is 9 for an ellipse, compared to 3 for a circle). So removing a point from the data structure at O(k log N) as it requires recalculating the smallest circle, which is O(k) for each parent that is affected which is O(log N). So removing m points from the data structure should be O(mk log N). You might also want to consider calculating the area of the ellipse every every removed point and removing every point for a cost of O(Nk log N) until you only have three points left. You could then analyze the area data to determine what ellipse should be used. A simple result would be to simply use the ellipse that has the area closest to the average area of all of the ellipses created, but may not be exactly what you seek. It also might be too slow, in which case I recommend a single pass of the faster algorithm.
This looks like an instance of Robust Ellipse Fitting. Check this paper: Outlier Elimination for
Robust Ellipse and Ellipsoid Fitting http://arxiv.org/pdf/0910.4610.pdf.
A first rough and easy solution is provided by the ellipse of inertia (2D version of the ellipsoid of inertia http://en.wikipedia.org/wiki/Moment_of_inertia#Inertia_ellipsoid). Its center is just the centroid and axes are given by Eigen vectors/values of the 2x2 matrix of inertia.

Dynamic focus management [ AIR / AS3 ]

I've run into a situation with a project I'm working on and I'm hoping to get some insight on how I might go about tackling it. Basically I am writing an AIR/AS3 app that allows the user to move focus around using the arrow keys on the keyboard. The problem I am trying to over come is that the clips are dynamically placed so I have no idea ahead of time what their position will be relative to each other. In addition to that, all of the clips have different shapes and sizes, so part of the weirdness is that some clips would occupy multiple columns, or multiple rows if you were laying out their positions on a grid for example.
So, the goal would be to have some logic that evaluates all of the clips sizes and/or positions and creates some form of map that allows clips to know who their nearest neighbor is when pressing right, left, up or down. The question is, what is the best approach for tackling something like this? I ultimately need it to feel very natural when moving around, and be far more intelligent then a tab-index list for example.
If I haven't provided enough information, please let me know and I can share additional details as needed. Just didn't want to go all crazy trying to explain things to start with.
Thanks in advance for any help!
Using the reference image, assume block "D" has focus. Using the logic #Pier's provided below, if I was to press "UP", would it know to go to block "A", or would it go to block "B" because it's distance and angle are less? In this case I think the user would expect it to go to block "A", but I'm thinking the code would evaluate to block "B" if I understand it correctly.
Calculating the distance and relative angle between two clips is easy (simple trigonometry). here are the function to calculate distance and angle between 2 x,y positions.
function angle(x1,y1,x2,y2):Number{
return radToDeg(Math.atan2((y2 - y1),(x2 - x1)));
}
function radToDeg(angle:Number):Number{
// to convert radians to degrees
return angle * 180 / Math.PI;
}
function distance(x1,y1,x2,y2):Number{
var dx:Number = x1 - x2;
var dy:Number = y1 - y2;
return Math.sqrt(dx * dx + dy * dy);
}
Knowing that, simply look what arrow the user has pressed. Then look the angles and distances of the other clips, and look how many clips there are in current direction (eg: what clips have an angle offset less than +-45 degrees), then look which one is closer, then change focus if there is any clip that meets the conditions.
I presume you won't have hundreds of clips placed on the stage, because in that case you should only calculate the angles for the closest clips.
Sorry for the delay following up here, but I ended up solving my issue by dynamically generating a grid map of all the clips positions which then allowed me to scan in various directions to find the next clip getting focus. Here is an output based on the example picture I provided originally:
[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,3,3,3,3,3,3,3,3,3]
[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,3,3,3,3,3,3,3,3,3]
[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,3,3,3,3,3,3,3,3,3]
[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,3,3,3,3,3,3,3,3,3]
[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,3,3,3,3,3,3,3,3,3]
[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,3,3,3,3,3,3,3,3,3]
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,2,2,2,2,2,2,2,2,4,4,4,4,4,4,4,4,4]
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,2,2,2,2,2,2,2,2,4,4,4,4,4,4,4,4,4]
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,2,2,2,2,2,2,2,2,4,4,4,4,4,4,4,4,4]
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,2,2,2,2,2,2,2,2,4,4,4,4,4,4,4,4,4]
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,2,2,2,2,2,2,2,2,4,4,4,4,4,4,4,4,4]
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,2,2,2,2,2,2,2,2,4,4,4,4,4,4,4,4,4]
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-,-,-,-,-,-,-,-,-,5,5,5,5,5,5,5,5,5]
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-,-,-,-,-,-,-,-,-,5,5,5,5,5,5,5,5,5]
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-,-,-,-,-,-,-,-,-,5,5,5,5,5,5,5,5,5]
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-,-,-,-,-,-,-,-,-,5,5,5,5,5,5,5,5,5]
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-,-,-,-,-,-,-,-,-,5,5,5,5,5,5,5,5,5]
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-,-,-,-,-,-,-,-,-,5,5,5,5,5,5,5,5,5]
I've had to adjust the grid size to balance the performance vs. fidelity, but it seems to be working great in the various scenarios I needed it.
Thanks again for the help #Pier. Although I didn't end up using the ray casting approach, it was very informative learning about it. I could see how in a game for example that could be super powerful.

Point closest to combined geometric shapes (compound shape)

I have a single point and a set of shapes. I need to know if the point is contained within the compound shape of those shapes. That is, where all of the shapes intersect.
But that is the easy part.
If the point is outside the compound shape I need to find the position within that compound shape that is closest to the point.
These shapes can be of the type:
square
circle
ring (circle with another circle cut out of the center)
inverse circle (basically just the circular hole and a never ending fill outside that hole, or to the end of the canvas is there must be a limit to its size)
part of circle (as in a pie chart)
part of ring (as above but
line
The example below has an inverted circle (the biggest circle with grey surrounding it), a ring (topleft) a square and a line.
If we don't consider the line, then the orange part is the shape to constrain to. If the line is taken into account then the saturated orange part of the line is the shape to constrain to.
The black small dots represent the points that need to be constrained. The blue dots represent the desired result. (a 1, b 2 etc.)
Point "f" has no corresponding constrained result, since it is already in the orange area.
For the purpose of this example, only point "e" is constrained to the line, all others are constrained to the orange orange area.
If none of the shapes would intersect, then the point cannot be constrained. If the constraint would consist of two lines that cross eachother, then every point would be constrained to the same position (the exact position where the lines cross).
I have found methods that come close to this, but none that I can combine to produce the above functionality.
Some similar questions that I found:
Points within a semi circle
What algorithm can I use to determine points within a semi-circle?
Point closest to MovieClip
Flash: Closest point to MovieClip
Closest point through Minkowski Sum (this will work if I can convert the compound shape to polygons)
http://www.codezealot.org/archives/153
Select edge of polygon closest to point (similar to above)
For a point in an irregular polygon, what is the most efficient way to select the edge closest to the point?
PS: I noticed that the orange area may actually come across as yellow on some screens. It's the colored area in any case.
This isn't much of an answer, but it's a bit too long to fit into a comment ...
It's tempting to think, and therefore to advise you, to find the nearest point in each of the shapes to the point of interest, and to find the nearest of those nearest points.
BUT
The area you are interested in is constructed by union, intersection and difference of other areas and there will, therefore, be no general relationship between the closest points of the original shapes and the closest point of the combined shape. If you understand what I mean. For example, while the closest point of A union B is the closest of the set {closest point of A, closest point of B}, the closest point of A intersection B is not a simple function of that same set; at least not for the general case.
I suggest, therefore, that you are going to have to compute the (complex) shape which represents the area of interest and use one of the algorithms you've already discovered to find the closest point to your point of interest.
I look forward to someone much better versed in computational geometry proving me wrong.
Let's call I the intersection of all the shapes, C the contour of I, p the point you want to constrain and r the result point. We have:
If p is in I, then r = p
If p is not in I, then r is in C. So r is the nearest point in C to p.
So I think what you should do is the following:
If p is inside of all the shapes, return p.
Compute the contour C of the intersection of all the shapes, it is defined by a list of parts (segments, arcs, ...).
Find the nearest point to p in every part of C (computed in 2.) and return the nearest point among them to p.
I've discussed this question at length with my brother, and together we came to conclude that any resulting point will always lie on either the point where two shapes intersect, or where a shape intersects with the line from that shape perpendicular to the original point.
In the case of a circular shape constraint, the perpendicular line equals the line to its center. In the case of a line shape constraint, the perpendicular line is (of course) the line perpendicular to itself. In the case of a rectangle, the perpendicular line is the line perpendicular to the closest edge.
(And the same, theoretically, for complex polygon constraints.)
So a new approach (that I'll have to test still) will be to:
calculate all intersecting (with a shape constraint or with the perpendicular line from the original point to the shape constraint) points
keep only those that are valid: that lie within (comply with) all constraints
select the one closest to the original point
If this works, then one more optimization could be to determine first, which intersecting points are nearest and check if they are valid, and then work outward away from the original point until a valid one is found.
If this does not work, I will have another look at the polygon clipping method. For that approach I've come across this useful post:
Compute union of two arbitrary shapes
where clipping complex polygons is made much easier through http://code.google.com/p/gpcas/
The method holds true for all the cases (all points and their results) above, and also for a number of other scenarios that we tested (on paper).
I will try a live version tomorrow at work.

Finding a free area in the stage

I'm drawing rectangles at random positions on the stage, and I don't want them to overlap.
So for each rectangle, I need to find a blank area to place it.
I've thought about trying a random position, verify if it is free with
private function containsRect(r:Rectangle):Boolean {
var free:Boolean = true;
for (var i:int = 0; i < numChildren; i++)
free &&= getChildAt(i).getBounds(this).containsRect(r);
return free;
}
and in case it returns false, to try with another random position.
The problem is that if there is no free space, I'll be stuck trying random positions forever.
There is an elegant solution to this?
Let S be the area of the stage. Let A be the area of the smallest rectangle we want to draw. Let N = S/A
One possible deterministic approach:
When you draw a rectangle on an empty stage, this divides the stage into at most 4 regions that can fit your next rectangle. When you draw your next rectangle, one or two regions are split into at most 4 sub-regions (each) that can fit a rectangle, etc. You will never create more than N regions, where S is the area of your stage, and A is the area of your smallest rectangle. Keep a list of regions (unsorted is fine), each represented by its four corner points, and each labeled with its area, and use weighted-by-area reservoir sampling with a reservoir size of 1 to select a region with probability proportional to its area in at most one pass through the list. Then place a rectangle at a random location in that region. (Select a random point from bottom left portion of the region that allows you to draw a rectangle with that point as its bottom left corner without hitting the top or right wall.)
If you are not starting from a blank stage then just build your list of available regions in O(N) (by re-drawing all the existing rectangles on a blank stage in any order, for example) before searching for your first point to draw a new rectangle.
Note: You can change your reservoir size to k to select the next k rectangles all in one step.
Note 2: You could alternatively store available regions in a tree with each edge weight equaling the sum of areas of the regions in the sub-tree over the area of the stage. Then to select a region in O(logN) we recursively select the root with probability area of root region / S, or each subtree with probability edge weight / S. Updating weights when re-balancing the tree will be annoying, though.
Runtime: O(N)
Space: O(N)
One possible randomized approach:
Select a point at random on the stage. If you can draw one or more rectangles that contain the point (not just one that has the point as its bottom left corner), then return a randomly positioned rectangle that contains the point. It is possible to position the rectangle without bias with some subtleties, but I will leave this to you.
At worst there is one space exactly big enough for our rectangle and the rest of the stage is filled. So this approach succeeds with probability > 1/N, or fails with probability < 1-1/N. Repeat N times. We now fail with probability < (1-1/N)^N < 1/e. By fail we mean that there is a space for our rectangle, but we did not find it. By succeed we mean we found a space if one existed. To achieve a reasonable probability of success we repeat either Nlog(N) times for 1/N probability of failure, or N² times for 1/e^N probability of failure.
Summary: Try random points until we find a space, stopping after NlogN (or N²) tries, in which case we can be confident that no space exists.
Runtime: O(NlogN) for high probability of success, O(N²) for very high probability of success
Space: O(1)
You can simplify things with a transformation. If you're looking for a valid place to put your LxH rectangle, you can instead grow all of the previous rectangles L units to the right, and H units down, and then search for a single point that doesn't intersect any of those. This point will be the lower-right corner of a valid place to put your new rectangle.
Next apply a scan-line sweep algorithm to find areas not covered by any rectangle. If you want a uniform distribution, you should choose a random y-coordinate (assuming you sweep down) weighted by free area distribution. Then choose a random x-coordinate uniformly from the open segments in the scan line you've selected.
I'm not sure how elegant this would be, but you could set up a maximum number of attempts. Maybe 100?
Sure you might still have some space available, but you could trigger the "finish" event anyway. It would be like when tween libraries snap an object to the destination point just because it's "close enough".
HTH
One possible check you could make to determine if there was enough space, would be to check how much area the current set of rectangels are taking up. If the amount of area left over is less than the area of the new rectangle then you can immediately give up and bail out. I don't know what information you have available to you, or whether the rectangles are being laid down in a regular pattern but if so you may be able to vary the check to see if there is obviously not enough space available.
This may not be the most appropriate method for you, but it was the first thing that popped into my head!
Assuming you define the dimensions of the rectangle before trying to draw it, I think something like this might work:
Establish a grid of possible centre points across the stage for the candidate rectangle. So for a 6x4 rectangle your first point would be at (3, 2), then (3 + 6 * x, 2 + 4 * y). If you can draw a rectangle between the four adjacent points then a possible space exists.
for (x = 0, x < stage.size / rect.width - 1, x++)
for (y = 0, y < stage.size / rect.height - 1, y++)
if can_draw_rectangle_at([x,y], [x+rect.width, y+rect.height])
return true;
This doesn't tell you where you can draw it (although it should be possible to build a list of the possible drawing areas), just that you can.
I think that the only efficient way to do this with what you have is to maintain a 2D boolean array of open locations. Have the array of sufficient size such that the drawing positions still appear random.
When you draw a new rectangle, zero out the corresponding rectangular piece of the array. Then checking for a free area is constant^H^H^H^H^H^H^H time. Oops, that means a lookup is O(nm) time, where n is the length, m is the width. There must be a range based solution, argh.
Edit2: Apparently the answer is here but in my opinion this might be a bit much to implement on Actionscript, especially if you are not keen on the geometry.
Here's the algorithm I'd use
Put down N number of random points, where N is the number of rectangles you want
iteratively increase the dimensions of rectangles created at each point N until they touch another rectangle.
You can constrain the way that the initial points are put down if you want to have a minimum allowable rectangle size.
If you want all the space covered with rectangles, you can then incrementally add random points to the remaining "free" space until there is no area left uncovered.