Where can I find source code of mldivide of GNU Octave? Is it implemented as C++ code or is it m-file? Typing which mldivide in GNU Octave command line returns mldivide is a built-in function. I searched but I couldn't find the source code.
On octave 3.8.2 at least, you get a bit more information.
octave-cli-3.8.2:2> which mldivide
'mldivide' is a built-in function from the file libinterp/corefcn/data.cc
this file can be found on the octave repository. That specific function is on line 6083:
DEFUN (mldivide, args, ,
"-*- texinfo -*-\n\
#deftypefn {Built-in Function} {} mldivide (#var{x}, #var{y})\n\
Return the matrix left division of #var{x} and #var{y}.\n\
This function and #w{#tcode{x #xbackslashchar{} y}} are equivalent.\n\
#seealso{mrdivide, ldivide, rdivide}\n\
#end deftypefn")
{
return binary_op_defun_body (octave_value::op_ldiv, args);
}
If you are comfortable going through the headers yourself to track down where magic happens, you should clone the repository to do so. If not, the octave doxygen docs may be helpful but have little more than the method and class names.
Related
If I made a python file named hello.py that has a script made like this.
msg = input("insert your message here: ")
script = '''
def say_something():
print("{msg}")
'''
exec(script)
say_something()
And then I tried to use Cython
from distutils.core import setup
from Cython.Build import cythonize
setup(
ext_modules=cythonize("Hello.py")
)
It will show an error like this: undeclared name not builtin: say_something
I do understand why this happens but I'm not really an expert with python and C just yet. This is just an example, but it's similar to what I'm trying to do with one of my projects. Is there any way I could resolve this? I want to find a way to convert the script string into C as well.
I was trying to build an editable python script.
Cython compiles the Python functions to a native binary that does what the CPython interpreter should do. exec is a function that execute arbitrary code at runtime (which is generally a very bad idea for speed, maintainability/readability and security). Cython does not support exec because it would mean that the could would be compiled at runtime. Thus, the code executed by exec cannot be a Cython code. However, the exec function can still be used to execute a pure-Python code. The error can be removed by turning off the Cython.Compiler.Options.error_on_unknown_names in the setup script (just before calling setup) as pointed out by #DavidW. With this Cython will not complain when it does not find a function defined by exec (or similar methods). Please keep in mind that CPython can only be used in this case instead of Cython (which partially defeat the purpose of using Cython in the first place).
I'm running into a strange issue calling a Java library from Octave. I'm using the JSON library from http://www.json.org/java/. Here's an example Java class:
import org.json.JSONObject;
public class Test {
public static void main(String[] args) throws Exception {
JSONObject obj = new JSONObject();
obj.put("primitive", 3.1415926);
obj.put("wrapped", new java.lang.Double(3.1415926));
System.out.println(obj.toString());
}
}
and the corresponding code in Octave (I'm using 3.8.1):
function test()
javaaddpath('json.jar')
obj = javaObject('org.json.JSONObject');
obj.put('primitive', 3.1415926);
obj.put('wrapped', javaObject('java.lang.Double', 3.1415926));
disp(obj.toString());
end
When I compile and run the Java code, I of course get
{"wrapped":3.1415926,"primitive":3.1415926}
With Octave, on my OS X laptop, I get the same thing.
$ octave --eval test
warning: function ./test.m shadows a core library function
GNU Octave, version 3.8.1
Copyright (C) 2014 John W. Eaton and others.
This is free software; see the source code for copying conditions.
There is ABSOLUTELY NO WARRANTY; not even for MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. For details, type 'warranty'.
Octave was configured for "x86_64-apple-darwin14.0.0".
Additional information about Octave is available at http://www.octave.org.
Please contribute if you find this software useful.
For more information, visit http://www.octave.org/get-involved.html
Read http://www.octave.org/bugs.html to learn how to submit bug reports.
For information about changes from previous versions, type 'news'.
{"primitive":3.1415926,"wrapped":3.1415926}
But on my Ubuntu 12.04 VM, with Octave installed from ppa:octave/stable, I get:
$ octave --eval test
warning: function ./test.m shadows a core library function
GNU Octave, version 3.8.1
Copyright (C) 2014 John W. Eaton and others.
This is free software; see the source code for copying conditions.
There is ABSOLUTELY NO WARRANTY; not even for MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. For details, type 'warranty'.
Octave was configured for "i686-pc-linux-gnu".
Additional information about Octave is available at http://www.octave.org.
Please contribute if you find this software useful.
For more information, visit http://www.octave.org/get-involved.html
Read http://www.octave.org/bugs.html to learn how to submit bug reports.
For information about changes from previous versions, type 'news'.
{"wrapped":3,"primitive":3.1415926}
Somehow the java.lang.Double object turns into an integer, or at least the fractional part gets stripped off. What is going on here?
Since I made some progress, I changed the title and made a second edit describing my new problem. You may choose to ignore Edit1
I have been trying to run python code from C code. And for this purpose I have been using Cython.
The semantics of my system is such that there is a binary (whos source I can not access) that calls a C function defined in a file (source is accessible) and within this function I need to call python functions, do some processing and return the result to binary.
To achieve this purpose, there are two approaches that I came across:
http://docs.python.org/release/2.5.2/ext/callingPython.html ===> This approach suggests to have the python callback function passed to the C side, so that the callback is called as necessary, but this doesn't work for me as I don't have access to the binary's source (which is used to run the entire system)
https://stackoverflow.com/a/5721123/1126425 ==> I have tried this approach and I get this error when the cython function is called:
Program received signal SIGSEGV, Segmentation fault.
[Switching to Thread 0xb47deb70 (LWP 2065)]
0x007fd38a in PySys_GetObject () from /usr/lib/libpython2.6.so.1.0
http://www.linuxjournal.com/article/8497?page=0,0 ==> This is in fact the basis for cython's functionality but again when I use the examples described there, I get errors similar to 2.
I have no idea how to resolve these errors. Any help would be much appreciated.
Thanks!!
Edit1:
here is a simple scenario that reflects situation:
external.c
#include <external.h>
int callback(int param1,int param2)//Function that the binary calls
{
/*SomeTasks*/
cython_func();//Function defined in the following .pyx file
/*SomeTasks*/
}
cython_file.pyx
cdef void cython_function():
print "Do Nothing!"
I am linking the shared library file created by cython with the library generated by compiling the above C code and then that library is used by the binary...
Edit2:
The segmentation fault goes away when I added Py_Initialize(); before calling cython_function(). But now I am getting the undefined symbol error as : symbol lookup error: lib_c_code.so: undefined symbol: cython_function
Here lib_c_code.so is the shared library created out of the external.c file above. I have tried including the .h file created by the cython compiler in external.c but it still didn't work out.. Here is how I am compiling lib_c_code.so:
gcc -shared -dynlib -lm -W1 -o lib_c_code.so $(OBJDIR)/*.o -lc -lm -lpy_code
and the libpy_code.so is the shared object file that was created out of the cython_file.pyx file as:
cython cython_file.pyx -o cython_file.c
gcc $(IFLAGS) -I/usr/include/python2.6 -fPIC -shared cython_file.c -lpython2.6 -lm -o libpy_code.so
Also, I can see the symbol cython_function in the lib_c_code.so file when I do : nm -g lib_c_code.so..
Any ideas please?
I have to guess here that there's a callback registration function to which you can pass the function pointer, in which case you can simply forego the C file and define a cdef function directly in your Cython code, and pass that with the callback registration function. Use with gil in case you manipulate any Python objects in it.
cdef extern from "external.h":
ctypedef int (*Cb_Func)(int param1, int param2)
void register_callback(Cb_Func func)
cdef int my_callback(int param1,int param2) with gil:
<implementation>
register_callback(my_callback)
This is also explained in the Cython user manual here: http://docs.cython.org/src/userguide/external_C_code.html
I tried messing around with Win32 binaries lately (this is for a big project of mine).
So after some weeks of research, I now have a solid understanding of how Assembly works, how it is converted into binary code and how x86/x64 opcodes work.
The last piece to the puzzle is figuring out how to properly call Win32 API methods.
I actually asked a question on here in relation to this, and the answer I got was, I should try and compile an Assembly or C program that does this. So I went ahead and tried this in Assembly (I'm using FASM by the way):
format PE console
entry start
section '.idata' import data readable writable
include 'win32a.inc'
library kernel,'kernel32.dll'
import kernel,\
GetStdHandle,'GetStdHandle',\
WriteConsoleA,'WriteConsoleA'
section '.data' data readable writable
string db 'Hello!', 0h
output dd ?
section '.code' code readable executable
start: push -11
call GetStdHandle
pushd 0
pushd output
pushd 7
pushd string
pushd eax
call WriteConsoleA
This is one of the many versions of this code actually. The main problem is, when I call methods like "ExitProcess", generally other functions from the kernel32.dll library, things seem to work out. It's the IO functions that bug me...
I don't understand what's wrong with this code, I don't get any compile-time errors, though when I run it, it just crashes.
So my next idea was, since this didn't work, to try the same in C.
I'm using Cygwin as a compiler and linker...
#include <windows.h>
int WINAPI WinMain(HINSTANCE hInstance, HINSTANCE hPrevInstance, LPSTR lpCmdLine, int nCmdShow) {
MessageBox(NULL, "Hello, world!", "Test", MB_OK);
return 0;
}
This code yielded the same result, the application crashed.
Now, I am not looking for any C/C++ code. My original question of interest was to know how calling extern library function looks like in x86/x64 binary (assembled) code. But I would be very thankful for any resources regarding this topic.
Thank you in advance.
-Tom S.
Your problem is that you need to call ExitProcess at the end to properly end the process. Since you are not doing that, the code currently will continue executing and eventually segfaults because it attempts to execute junk bytes.
In gcc, the close function is used to close the file pointer. However my nvcc complier will not allow that. I can't seem to find a cuda-specific call or alias.
Is there a special cuda file pointer close?
This is the error I get.
error: identifier "close" is undefined
For this simple code;
FILE* fp = fopen(filename,"r");
if(fp == NULL)
{
return NULL;
}
close(fp);
When NVCC compiles your .cu file, it delegates the compilation of the C/C++ parts of the file to your native C/C++ compiler (gcc in your case). So, the error is coming from gcc.
You need to check why gcc is producing this error for the code in this file. Most probably, you have not included the necessary header file where close() is defined, unistd.h. Or try fclose() as another commenter has suggested.