Problems deploying in OpsWorks - mysql

Question

I created a new Rails application and I have done this:
I changed the "sqlite3" gem to "mysql2" and I added "unicorn".
I pushed the application to bitbucket
I have created the Stack, the Rails Layer and initialise the Instance in OpsWorks, also I have created the App (Ruby on rails type) and linked it to the bitbucket repository.
Then when I try to do the first deploy I get the below error:
[2015-01-22T00:11:16+00:00] INFO: Starting chef-zero on port 8889 with repository at repository at /opt/aws/opsworks/current
One version per cookbook
data_bags at /var/lib/aws/opsworks/data/data_bags
nodes at /var/lib/aws/opsworks/data/nodes
[2015-01-22T00:11:17+00:00] INFO: Forking chef instance to converge...
[2015-01-22T00:11:17+00:00] INFO: *** Chef 11.10.4 ***
[2015-01-22T00:11:17+00:00] INFO: Chef-client pid: 3826
[2015-01-22T00:11:17+00:00] INFO: Setting the run_list to ["opsworks_custom_cookbooks::load", "opsworks_custom_cookbooks::execute"] from JSON
[2015-01-22T00:11:17+00:00] WARN: Run List override has been provided.
[2015-01-22T00:11:17+00:00] WARN: Original Run List: [recipe[opsworks_custom_cookbooks::load], recipe[opsworks_custom_cookbooks::execute]]
[2015-01-22T00:11:17+00:00] WARN: Overridden Run List: [recipe[opsworks_custom_cookbooks::load], recipe[opsworks_custom_cookbooks::execute]]
[2015-01-22T00:11:17+00:00] INFO: Run List is [recipe[opsworks_custom_cookbooks::load], recipe[opsworks_custom_cookbooks::execute]]
[2015-01-22T00:11:17+00:00] INFO: Run List expands to [opsworks_custom_cookbooks::load, opsworks_custom_cookbooks::execute]
[2015-01-22T00:11:17+00:00] INFO: Starting Chef Run for rails-app1.localdomain
[2015-01-22T00:11:17+00:00] INFO: Running start handlers
[2015-01-22T00:11:17+00:00] INFO: Start handlers complete.
[2015-01-22T00:11:17+00:00] INFO: HTTP Request Returned 404 Not Found: Object not found: /reports/nodes/rails-app1.localdomain/runs
[2015-01-22T00:11:22+00:00] INFO: Loading cookbooks [apache2, dependencies, deploy, gem_support, mod_php5_apache2, mysql, nginx, opsworks_agent_monit, opsworks_aws_flow_ruby, opsworks_berkshelf, opsworks_bundler, opsworks_commons, opsworks_custom_cookbooks, opsworks_initial_setup, opsworks_java, opsworks_nodejs, opsworks_rubygems, packages, passenger_apache2, php, rails, ruby, scm_helper, ssh_users, unicorn]
[2015-01-22T00:11:23+00:00] INFO: Not needed with Chef 11.x (x >= 8) anymore.
[2015-01-22T00:11:23+00:00] INFO: Processing directory[/opt/aws/opsworks/current/site-cookbooks] action delete (opsworks_custom_cookbooks::load line 4)
[2015-01-22T00:11:23+00:00] INFO: Processing ruby_block[merge all cookbooks sources] action run (opsworks_custom_cookbooks::load line 12)
[2015-01-22T00:11:23+00:00] INFO: ruby_block[merge all cookbooks sources] called
[2015-01-22T00:11:23+00:00] WARN: Skipping final node save because override_runlist was given
[2015-01-22T00:11:23+00:00] INFO: Chef Run complete in 5.728910816 seconds
[2015-01-22T00:11:23+00:00] INFO: Running report handlers
[2015-01-22T00:11:23+00:00] INFO: Report handlers complete
---
[2015-01-22T00:11:23+00:00] INFO: Starting chef-zero on port 8889 with repository at repository at /opt/aws/opsworks/current
One version per cookbook
data_bags at /var/lib/aws/opsworks/data/data_bags
nodes at /var/lib/aws/opsworks/data/nodes
[2015-01-22T00:11:24+00:00] INFO: Forking chef instance to converge...
[2015-01-22T00:11:24+00:00] INFO: *** Chef 11.10.4 ***
[2015-01-22T00:11:24+00:00] INFO: Chef-client pid: 3971
[2015-01-22T00:11:24+00:00] INFO: Setting the run_list to ["opsworks_custom_cookbooks::load", "opsworks_custom_cookbooks::execute"] from JSON
[2015-01-22T00:11:24+00:00] WARN: Run List override has been provided.
[2015-01-22T00:11:24+00:00] WARN: Original Run List: [recipe[opsworks_custom_cookbooks::load], recipe[opsworks_custom_cookbooks::execute]]
[2015-01-22T00:11:24+00:00] WARN: Overridden Run List: [recipe[deploy::default], recipe[opsworks_stack_state_sync], recipe[deploy::rails], recipe[test_suite], recipe[opsworks_cleanup]]
[2015-01-22T00:11:24+00:00] INFO: Run List is [recipe[deploy::default], recipe[opsworks_stack_state_sync], recipe[deploy::rails], recipe[test_suite], recipe[opsworks_cleanup]]
[2015-01-22T00:11:24+00:00] INFO: Run List expands to [deploy::default, opsworks_stack_state_sync, deploy::rails, test_suite, opsworks_cleanup]
[2015-01-22T00:11:24+00:00] INFO: Starting Chef Run for rails-app1.localdomain
[2015-01-22T00:11:24+00:00] INFO: Running start handlers
[2015-01-22T00:11:24+00:00] INFO: Start handlers complete.
[2015-01-22T00:11:24+00:00] INFO: HTTP Request Returned 404 Not Found: Object not found: /reports/nodes/rails-app1.localdomain/runs
[2015-01-22T00:11:29+00:00] INFO: Loading cookbooks [apache2, dependencies, deploy, gem_support, mod_php5_apache2, mysql, nginx, opsworks_agent_monit, opsworks_aws_flow_ruby, opsworks_bundler, opsworks_cleanup, opsworks_commons, opsworks_initial_setup, opsworks_java, opsworks_nodejs, opsworks_rubygems, opsworks_stack_state_sync, packages, passenger_apache2, php, rails, ruby, scm_helper, ssh_users, test_suite, unicorn]
...removed some code for stackoverflow body limitation
[2015-01-22T00:11:32+00:00] INFO: file[/home/deploy/.ssh/config] updated atime and mtime to 2015-01-22 00:11:32 +0000
[2015-01-22T00:11:32+00:00] INFO: Processing execute[echo 'StrictHostKeyChecking no' > /home/deploy/.ssh/config] action run (deploy::rails line 23)
[2015-01-22T00:11:32+00:00] INFO: execute[echo 'StrictHostKeyChecking no' > /home/deploy/.ssh/config] ran successfully
[2015-01-22T00:11:32+00:00] INFO: Processing template[/home/deploy/.ssh/id_dsa] action create (deploy::rails line 27)
[2015-01-22T00:11:32+00:00] INFO: template[/home/deploy/.ssh/id_dsa] created file /home/deploy/.ssh/id_dsa
[2015-01-22T00:11:32+00:00] INFO: template[/home/deploy/.ssh/id_dsa] updated file contents /home/deploy/.ssh/id_dsa
[2015-01-22T00:11:32+00:00] INFO: template[/home/deploy/.ssh/id_dsa] owner changed to 4000
[2015-01-22T00:11:32+00:00] INFO: template[/home/deploy/.ssh/id_dsa] group changed to 497
[2015-01-22T00:11:32+00:00] INFO: template[/home/deploy/.ssh/id_dsa] mode changed to 600
[2015-01-22T00:11:32+00:00] INFO: Processing directory[/srv/www/ariadna/shared/cached-copy] action delete (deploy::rails line 48)
[2015-01-22T00:11:32+00:00] INFO: Processing ruby_block[change HOME to /home/deploy for source checkout] action run (deploy::rails line 56)
[2015-01-22T00:11:32+00:00] INFO: ruby_block[change HOME to /home/deploy for source checkout] called
[2015-01-22T00:11:32+00:00] INFO: Processing deploy[/srv/www/ariadna] action deploy (deploy::rails line 65)
[2015-01-22T00:11:34+00:00] INFO: deploy[/srv/www/ariadna] cloning repo git#bitbucket.org:viktorpr7/ariadna-beta.git to /srv/www/ariadna/shared/cached-copy
[2015-01-22T00:11:36+00:00] INFO: deploy[/srv/www/ariadna] checked out branch: master onto: deploy reference: 6450219b5689de565864424e4fe48da22700e088
[2015-01-22T00:11:36+00:00] INFO: deploy[/srv/www/ariadna] synchronizing git submodules
[2015-01-22T00:11:36+00:00] INFO: deploy[/srv/www/ariadna] enabling git submodules
[2015-01-22T00:11:36+00:00] INFO: deploy[/srv/www/ariadna] set user to deploy
[2015-01-22T00:11:36+00:00] INFO: deploy[/srv/www/ariadna] set group to nginx
[2015-01-22T00:11:36+00:00] INFO: deploy[/srv/www/ariadna] copied the cached checkout to /srv/www/ariadna/releases/20150122001132
[2015-01-22T00:11:36+00:00] INFO: deploy[/srv/www/ariadna] set user to deploy
[2015-01-22T00:11:36+00:00] INFO: deploy[/srv/www/ariadna] set group to nginx
[2015-01-22T00:11:36+00:00] INFO: deploy[/srv/www/ariadna] running callback before_migrate
[2015-01-22T00:11:36+00:00] INFO: deploy[/srv/www/ariadna] created directories before symlinking: tmp,public,config
[2015-01-22T00:11:36+00:00] INFO: deploy[/srv/www/ariadna] linked shared paths into current release: system => public/system, pids => tmp/pids, log => log
[2015-01-22T00:11:36+00:00] INFO: deploy[/srv/www/ariadna] made pre-migration symlinks
[2015-01-22T00:11:36+00:00] INFO: deploy[/srv/www/ariadna] set user to deploy
[2015-01-22T00:11:36+00:00] INFO: deploy[/srv/www/ariadna] set group to nginx
[2015-01-22T00:11:36+00:00] INFO: Gemfile detected. Running bundle install.
[2015-01-22T00:11:36+00:00] INFO: sudo su - deploy -c 'cd /srv/www/ariadna/releases/20150122001132 && /usr/local/bin/bundle install --path /home/deploy/.bundler/ariadna --without=test development'
================================================================================
Error executing action `deploy` on resource 'deploy[/srv/www/ariadna]'
================================================================================
Mixlib::ShellOut::ShellCommandFailed
------------------------------------
Expected process to exit with [0], but received '5'
---- Begin output of sudo su - deploy -c 'cd /srv/www/ariadna/releases/20150122001132 && /usr/local/bin/bundle install --path /home/deploy/.bundler/ariadna --without=test development' 2>&1 ----
STDOUT: Fetching gem metadata from https://rubygems.org/...........
Installing rake (10.4.2)
Installing i18n (0.7.0)
Installing json (1.8.2)
Installing minitest (5.5.1)
Installing thread_safe (0.3.4)
Installing tzinfo (1.2.2)
Installing activesupport (4.1.9)
Installing builder (3.2.2)
Installing erubis (2.7.0)
Installing actionview (4.1.9)
Installing rack (1.5.2)
Installing rack-test (0.6.3)
Installing actionpack (4.1.9)
Installing mime-types (2.4.3)
Installing mail (2.6.3)
Installing actionmailer (4.1.9)
Installing activemodel (4.1.9)
Installing arel (5.0.1.20140414130214)
Installing activerecord (4.1.9)
Installing coffee-script-source (1.8.0)
Installing execjs (2.2.2)
Installing coffee-script (2.3.0)
Installing thor (0.19.1)
Installing railties (4.1.9)
Installing coffee-rails (4.0.1)
Installing hike (1.2.3)
Installing multi_json (1.10.1)
Installing jbuilder (2.2.6)
Installing jquery-rails (3.1.2)
Installing kgio (2.9.2)
Gem::Ext::BuildError: ERROR: Failed to build gem native extension.
/usr/local/bin/ruby extconf.rb
checking for ruby/thread.h... yes
checking for rb_thread_call_without_gvl() in ruby/thread.h... yes
checking for rb_thread_blocking_region()... yes
checking for rb_wait_for_single_fd()... yes
checking for rb_hash_dup()... yes
checking for rb_intern3()... yes
checking for mysql_query() in -lmysqlclient... no
checking for main() in -lm... yes
checking for mysql_query() in -lmysqlclient... no
checking for main() in -lz... yes
checking for mysql_query() in -lmysqlclient... no
checking for main() in -lsocket... no
checking for mysql_query() in -lmysqlclient... no
checking for main() in -lnsl... yes
checking for mysql_query() in -lmysqlclient... no
checking for main() in -lmygcc... no
checking for mysql_query() in -lmysqlclient... no
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--without-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=/usr/local/bin/ruby
--with-mysql-dir
--without-mysql-dir
--with-mysql-include
--without-mysql-include=${mysql-dir}/include
--with-mysql-lib
--without-mysql-lib=${mysql-dir}/lib
--with-mysql-config
--without-mysql-config
--with-mysql-dir
--without-mysql-dir
--with-mysql-include
--without-mysql-include=${mysql-dir}/include
--with-mysql-lib
--without-mysql-lib=${mysql-dir}/lib
--with-mysqlclientlib
--without-mysqlclientlib
--with-mlib
--without-mlib
--with-mysqlclientlib
--without-mysqlclientlib
--with-zlib
--without-zlib
--with-mysqlclientlib
--without-mysqlclientlib
--with-socketlib
--without-socketlib
--with-mysqlclientlib
--without-mysqlclientlib
--with-nsllib
--without-nsllib
--with-mysqlclientlib
--without-mysqlclientlib
--with-mygcclib
--without-mygcclib
--with-mysqlclientlib
--without-mysqlclientlib
extconf failed, exit code 1
Gem files will remain installed in /home/deploy/.bundler/ariadna/ruby/2.1.0/gems/mysql2-0.3.16 for inspection.
Results logged to /home/deploy/.bundler/ariadna/ruby/2.1.0/extensions/x86_64-linux/2.1.0/mysql2-0.3.16/gem_make.out
An error occurred while installing mysql2 (0.3.16), and Bundler cannot continue.
Make sure that `gem install mysql2 -v '0.3.16'` succeeds before bundling.
STDERR:
---- End output of sudo su - deploy -c 'cd /srv/www/ariadna/releases/20150122001132 && /usr/local/bin/bundle install --path /home/deploy/.bundler/ariadna --without=test development' 2>&1 ----
Ran sudo su - deploy -c 'cd /srv/www/ariadna/releases/20150122001132 && /usr/local/bin/bundle install --path /home/deploy/.bundler/ariadna --without=test development' 2>&1 returned 5
Cookbook Trace:
---------------
/var/lib/aws/opsworks/cache.stage2/cookbooks/opsworks_commons/libraries/shellout.rb:8:in `shellout'
/var/lib/aws/opsworks/cache.stage2/cookbooks/rails/libraries/rails_configuration.rb:41:in `bundle'
/var/lib/aws/opsworks/cache.stage2/cookbooks/deploy/definitions/opsworks_deploy.rb:105:in `block (3 levels) in from_file'
Resource Declaration:
---------------------
# In /var/lib/aws/opsworks/cache.stage2/cookbooks/deploy/definitions/opsworks_deploy.rb
65: deploy deploy[:deploy_to] do
66: provider Chef::Provider::Deploy.const_get(deploy[:chef_provider])
67: keep_releases deploy[:keep_releases]
68: repository deploy[:scm][:repository]
69: user deploy[:user]
70: group deploy[:group]
71: revision deploy[:scm][:revision]
72: migrate deploy[:migrate]
73: migration_command deploy[:migrate_command]
74: environment deploy[:environment].to_hash
75: purge_before_symlink(deploy[:purge_before_symlink]) unless deploy[:purge_before_symlink].nil?
76: create_dirs_before_symlink(deploy[:create_dirs_before_symlink])
77: symlink_before_migrate(deploy[:symlink_before_migrate])
78: symlinks(deploy[:symlinks]) unless deploy[:symlinks].nil?
79: action deploy[:action]
80:
81: if deploy[:application_type] == 'rails' && node[:opsworks][:instance][:layers].include?('rails-app')
82: restart_command "sleep #{deploy[:sleep_before_restart]} && #{node[:opsworks][:rails_stack][:restart_command]}"
83: end
84:
Compiled Resource:
------------------
# Declared in /var/lib/aws/opsworks/cache.stage2/cookbooks/deploy/definitions/opsworks_deploy.rb:65:in `block in from_file'
deploy("/srv/www/ariadna") do
params {:deploy_data=>{"deploy_to"=>"/srv/www/ariadna", "chef_provider"=>"Timestamped", "keep_releases"=>5, "current_path"=>"/srv/www/ariadna/current", "document_root"=>"public", "ignore_bundler_groups"=>["test", "development"], "absolute_document_root"=>"/srv/www/ariadna/current/public/", "rake"=>"/usr/local/bin/rake", "migrate"=>true, "migrate_command"=>"if [ -f Gemfile ]; then echo 'OpsWorks: Gemfile found - running migration with bundle exec' && /usr/local/bin/bundle exec /usr/local/bin/rake db:migrate; else echo 'OpsWorks: no Gemfile - running plain migrations' && /usr/local/bin/rake db:migrate; fi", "rails_env"=>"production", "action"=>"deploy", "user"=>"deploy", "group"=>"nginx", "shell"=>"/bin/bash", "home"=>"/home/deploy", "sleep_before_restart"=>0, "stack"=>{"needs_reload"=>true}, "enable_submodules"=>true, "shallow_clone"=>false, "delete_cached_copy"=>true, "purge_before_symlink"=>["log", "tmp/pids", "public/system"], "create_dirs_before_symlink"=>["tmp", "public", "config"], "symlink_before_migrate"=>{"config/database.yml"=>"config/database.yml", "config/memcached.yml"=>"config/memcached.yml"}, "symlinks"=>{"system"=>"public/system", "pids"=>"tmp/pids", "log"=>"log"}, "environment"=>{"RAILS_ENV"=>"production", "RUBYOPT"=>"", "RACK_ENV"=>"production", "HOME"=>"/home/deploy"}, "environment_variables"=>{}, "ssl_support"=>false, "auto_npm_install_on_deploy"=>true, "nodejs"=>{"restart_command"=>"monit restart node_web_app_ariadna", "stop_command"=>"monit stop node_web_app_ariadna", "port"=>80}, "application"=>"ariadna", "application_type"=>"rails", "auto_bundle_on_deploy"=>true, "deploying_user"=>"arn:aws:iam::673556511701:root", "domains"=>["ariadna"], "mounted_at"=>nil, "restart_command"=>nil, "ssl_certificate"=>nil, "ssl_certificate_key"=>nil, "ssl_certificate_ca"=>nil, "scm"=>{"scm_type"=>"git", "repository"=>"git#bitbucket.org:viktorpr7/ariadna-beta.git", "revision"=>"master", "ssh_key"=>"-----BEGIN RSA PRIVATE KEY-----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\nodNSsgut3SfHUR5uCb06Q+FJo8CHus/r1vzNpfL9er01RpXhVZOYUoY=\n-----END RSA PRIVATE KEY-----", "user"=>nil, "password"=>nil}, "database"=>{}, "memcached"=>{"host"=>nil, "port"=>11211}}, :app=>"ariadna", :name=>nil}
provider Chef::Provider::Deploy::Timestamped
action [:deploy]
updated true
updated_by_last_action true
retries 0
retry_delay 2
deploy_to "/srv/www/ariadna"
environment {"RAILS_ENV"=>"production", "RUBYOPT"=>"", "RACK_ENV"=>"production", "HOME"=>"/home/deploy"}
repository_cache "cached-copy"
purge_before_symlink ["log", "tmp/pids", "public/system"]
create_dirs_before_symlink ["tmp", "public", "config"]
symlink_before_migrate {"config/database.yml"=>"config/database.yml", "config/memcached.yml"=>"config/memcached.yml"}
symlinks {"system"=>"public/system", "pids"=>"tmp/pids", "log"=>"log"}
revision "master"
migrate true
remote "origin"
enable_submodules true
scm_provider Chef::Provider::Git
keep_releases 5
enable_checkout true
checkout_branch "deploy"
cookbook_name "deploy"
recipe_name "rails"
repo "git#bitbucket.org:viktorpr7/ariadna-beta.git"
user "deploy"
group "nginx"
migration_command "if [ -f Gemfile ]; then echo 'OpsWorks: Gemfile found - running migration with bundle exec' && /usr/local/bin/bundle exec /usr/local/bin/rake db:migrate; else echo 'OpsWorks: no Gemfile - running plain migrations' && /usr/local/bin/rake db:migrate; fi"
restart_command "sleep 0 && ../../shared/scripts/unicorn clean-restart"
before_migrate #<Proc:0x007f21fcfabcc8#/var/lib/aws/opsworks/cache.stage2/cookbooks/deploy/definitions/opsworks_deploy.rb:100>
shared_path "/srv/www/ariadna/shared"
destination "/srv/www/ariadna/shared/cached-copy"
current_path "/srv/www/ariadna/current"
end
[2015-01-22T00:12:05+00:00] INFO: Running queued delayed notifications before re-raising exception
[2015-01-22T00:12:05+00:00] ERROR: Running exception handlers
[2015-01-22T00:12:05+00:00] ERROR: Exception handlers complete
[2015-01-22T00:12:05+00:00] FATAL: Stacktrace dumped to /var/lib/aws/opsworks/cache.stage2/chef-stacktrace.out
[2015-01-22T00:12:05+00:00] ERROR: deploy[/srv/www/ariadna] (deploy::rails line 65) had an error: Mixlib::ShellOut::ShellCommandFailed: Expected process to exit with [0], but received '5'
---- Begin output of sudo su - deploy -c 'cd /srv/www/ariadna/releases/20150122001132 && /usr/local/bin/bundle install --path /home/deploy/.bundler/ariadna --without=test development' 2>&1 ----
STDOUT: Fetching gem metadata from https://rubygems.org/...........
Installing rake (10.4.2)
Installing i18n (0.7.0)
Installing json (1.8.2)
Installing minitest (5.5.1)
Installing thread_safe (0.3.4)
Installing tzinfo (1.2.2)
Installing activesupport (4.1.9)
Installing builder (3.2.2)
Installing erubis (2.7.0)
Installing actionview (4.1.9)
Installing rack (1.5.2)
Installing rack-test (0.6.3)
Installing actionpack (4.1.9)
Installing mime-types (2.4.3)
Installing mail (2.6.3)
Installing actionmailer (4.1.9)
Installing activemodel (4.1.9)
Installing arel (5.0.1.20140414130214)
Installing activerecord (4.1.9)
Installing coffee-script-source (1.8.0)
Installing execjs (2.2.2)
Installing coffee-script (2.3.0)
Installing thor (0.19.1)
Installing railties (4.1.9)
Installing coffee-rails (4.0.1)
Installing hike (1.2.3)
Installing multi_json (1.10.1)
Installing jbuilder (2.2.6)
Installing jquery-rails (3.1.2)
Installing kgio (2.9.2)
Gem::Ext::BuildError: ERROR: Failed to build gem native extension.
/usr/local/bin/ruby extconf.rb
checking for ruby/thread.h... yes
checking for rb_thread_call_without_gvl() in ruby/thread.h... yes
checking for rb_thread_blocking_region()... yes
checking for rb_wait_for_single_fd()... yes
checking for rb_hash_dup()... yes
checking for rb_intern3()... yes
checking for mysql_query() in -lmysqlclient... no
checking for main() in -lm... yes
checking for mysql_query() in -lmysqlclient... no
checking for main() in -lz... yes
checking for mysql_query() in -lmysqlclient... no
checking for main() in -lsocket... no
checking for mysql_query() in -lmysqlclient... no
checking for main() in -lnsl... yes
checking for mysql_query() in -lmysqlclient... no
checking for main() in -lmygcc... no
checking for mysql_query() in -lmysqlclient... no
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--without-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=/usr/local/bin/ruby
--with-mysql-dir
--without-mysql-dir
--with-mysql-include
--without-mysql-include=${mysql-dir}/include
--with-mysql-lib
--without-mysql-lib=${mysql-dir}/lib
--with-mysql-config
--without-mysql-config
--with-mysql-dir
--without-mysql-dir
--with-mysql-include
--without-mysql-include=${mysql-dir}/include
--with-mysql-lib
--without-mysql-lib=${mysql-dir}/lib
--with-mysqlclientlib
--without-mysqlclientlib
--with-mlib
--without-mlib
--with-mysqlclientlib
--without-mysqlclientlib
--with-zlib
--without-zlib
--with-mysqlclientlib
--without-mysqlclientlib
--with-socketlib
--without-socketlib
--with-mysqlclientlib
--without-mysqlclientlib
--with-nsllib
--without-nsllib
--with-mysqlclientlib
--without-mysqlclientlib
--with-mygcclib
--without-mygcclib
--with-mysqlclientlib
--without-mysqlclientlib
extconf failed, exit code 1
Gem files will remain installed in /home/deploy/.bundler/ariadna/ruby/2.1.0/gems/mysql2-0.3.16 for inspection.
Results logged to /home/deploy/.bundler/ariadna/ruby/2.1.0/extensions/x86_64-linux/2.1.0/mysql2-0.3.16/gem_make.out
An error occurred while installing mysql2 (0.3.16), and Bundler cannot continue.
Make sure that `gem install mysql2 -v '0.3.16'` succeeds before bundling.
STDERR:
---- End output of sudo su - deploy -c 'cd /srv/www/ariadna/releases/20150122001132 && /usr/local/bin/bundle install --path /home/deploy/.bundler/ariadna --without=test development' 2>&1 ----
Ran sudo su - deploy -c 'cd /srv/www/ariadna/releases/20150122001132 && /usr/local/bin/bundle install --path /home/deploy/.bundler/ariadna --without=test development' 2>&1 returned 5
[2015-01-22T00:12:05+00:00] FATAL: Chef::Exceptions::ChildConvergeError: Chef run process exited unsuccessfully (exit code 1)
Updated:
I'm using Ubuntu 14.04, I added the libmysqlclient-dev but still the same error when I try deploy, here you can see the Layer configuration:
I needed to restart the instance

Answer 1

You'll need to intall the relevent OS packages.
Steps:
Log into Opsworks
Click Layers on the left sidebar.
Find and click Recipes within the Rails App Server (or whatever your server is).
Click the Edit button.
From there towards the bottom you will have to add the packages you need.
I think it'll be:
mysql-devel
mysql
Edit The correct package, as you added later in your question, is libmysqlclient-dev.
This should fix your issue.

Answer 2

You need to install the mysql client libraries. The exact package name varies based on OS but something like package 'mysql-client-dev'.