Tomcat 7 connect to remote MySQL host - mysql

I am trying to connect Tomcat 7.0.54 to a remote MySQL host - I have enabled remote access on the remote MySQL server and I can ping the remote MySQL server and can connect and list tables etc remotely from the Tomcat host.
When I try and connect in Tomcat application I get an error:
Communications link failure The last packet sent successfully to the
server was 0 milliseconds ago. The driver has not received any packets
from the server.
and then further down in the dump I get:
Inner error: Message: Connection refused
I am a complete newbie to Tomcat so I am struggling to know where to go with this - I can connect to MySQL so it doesn't seem to be the remote MySQL server or networking which means something in Tomcat or the Java app is causing the problem. There is nothing in the Tomcat log files nor the application itself pointing to an issue - what else can I try?
Trace dump:
Inner error: Message: Communications link failure The last packet
sent successfully to the server was 0 milliseconds ago. The driver has
not received any packets from the server. Source: Stack Trace: at
sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526) at
com.mysql.jdbc.Util.handleNewInstance(Util.java:411) at
com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1117)
at com.mysql.jdbc.MysqlIO.(MysqlIO.java:355) at
com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2461)
at
com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2498)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2283)
at com.mysql.jdbc.ConnectionImpl.(ConnectionImpl.java:822) at
com.mysql.jdbc.JDBC4Connection.(JDBC4Connection.java:47) at
sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526) at
com.mysql.jdbc.Util.handleNewInstance(Util.java:411) at
com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:404) at
com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:317)
at
Mainsoft.Data.Jdbc.Providers.GenericProvider$JdbcUrlConnector.get_Connection(GenericProvider.cs:183)
at
Mainsoft.Data.Jdbc.Providers.GenericProvider.GetConnection(GenericProvider.cs:336)
at
system.Data.ProviderBase.AbstractDBConnection.Open(AbstractDBConnection.cs:495)
at rdServer.rdSqlReader.(Unknown Source) at
rdServer.rdDb.access$4300(Unknown Source) at
rdServer.rdDb.CreateDataReader(Unknown Source) at
rdServer.rdDb.ProcessData(Unknown Source) at
rdServer.rdDb.ProcessDataLayerElement(Unknown Source) at
rdServer.rdDb.xmlGetData(Unknown Source) at
rdServer.rdDb9.xmlGetData(Unknown Source) at
rdServer.rdAnalysisGrid10.ResetData(Unknown Source) at
rdServer.rdAnalysisGrid10.BuildAnalysisGrid(Unknown Source) at
rdServer.PageBuilder.sProcess_AnalysisGrid(Unknown Source) at
rdServer.PageBuilder.sProcessDefinitionElement(Unknown Source) at
rdServer.PageBuilder.sProcessDefinitionElementChildren(Unknown Source)
at rdServer.PageBuilder.sProcess_Body(Unknown Source) at
rdServer.PageBuilder.sProcessDefinitionElement(Unknown Source) at
rdServer.PageBuilder.sProcessDefinitionElementChildren(Unknown Source)
at rdServer.PageBuilder.sProcess_Report(Unknown Source) at
rdServer.PageBuilder.sProcessDefinitionElement(Unknown Source) at
rdServer.PageBuilder.BuildHtml(Unknown Source) at
rdServer.ResponseBuilder.BuildResponse(Unknown Source) at
ASP.rdpage_aspx.__Render__control1(rdPage.aspx:4) at
ASP.rdpage_aspx$__Impl0.Invoke(Unknown Source) at
system.Web.UI.Control.RenderChildren(Control.cs:1101) at
system.Web.UI.Control.Render(Control.cs:1090) at
system.Web.UI.Page.Render(Page.cs:1095) at
system.Web.UI.Control.RenderControl(Control.cs:1254) at
system.Web.UI.Page.RenderPage(Page.cs:1621) at
system.Web.UI.Page.encodeChildren(Page.jvm.cs:159) at
Mainsoft.Web.Hosting.BaseFacesViewHandler.renderView(BaseFacesViewHandler.cs:58)
at
org.apache.myfaces.lifecycle.RenderResponseExecutor.execute(RenderResponseExecutor.java:41)
at
org.apache.myfaces.lifecycle.LifecycleImpl.render(LifecycleImpl.java:132)
at
Mainsoft.Web.Hosting.ServletFacesPageHandler.ProcessRequest(ServletFacesPageHandler.cs:116)
at
Mainsoft.Web.Hosting.SessionWrapper$SessionWrapperHandler.ProcessRequest(SessionWrapper.cs:40)
at
system.Web.HttpApplication$Pipelined__7.MoveNext$Z$$$Pipeline$$d__7$$(HttpApplication.cs:1033)
at system.Web.HttpApplication.Tick(HttpApplication.cs:705) at
system.Web.HttpApplication.Start(HttpApplication.cs:1217) at
system.Web.HttpApplication.System_Web_IHttpAsyncHandler_BeginProcessRequest(HttpApplication.cs:1319)
at system.Web.HttpRuntime.RealProcessRequest(HttpRuntime.cs:482) at
system.Web.HttpRuntime.ProcessRequest(HttpRuntime.cs:523) at
Mainsoft.Web.Hosting.BaseHttpServlet.service(BaseHttpServlet.cs:200)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:727) at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at
org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
at
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:501)
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171)
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
at
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
at
org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1040)
at
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:607)
at
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at
org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
Inner error: Message: Connection refused Source: Stack Trace: at
java.net.PlainSocketImpl.socketConnect(Native Method) at
java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:339)
at
java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:200)
at
java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:182)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) at
java.net.Socket.connect(Socket.java:579) at
java.net.Socket.connect(Socket.java:528) at
java.net.Socket.(Socket.java:425) at
java.net.Socket.(Socket.java:241) at
com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:259)
at com.mysql.jdbc.MysqlIO.(MysqlIO.java:305) at
com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2461)
at
com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2498)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2283)
at com.mysql.jdbc.ConnectionImpl.(ConnectionImpl.java:822) at
com.mysql.jdbc.JDBC4Connection.(JDBC4Connection.java:47) at
sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526) at
com.mysql.jdbc.Util.handleNewInstance(Util.java:411) at
com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:404) at
com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:317)
at
Mainsoft.Data.Jdbc.Providers.GenericProvider$JdbcUrlConnector.get_Connection(GenericProvider.cs:183)
at
Mainsoft.Data.Jdbc.Providers.GenericProvider.GetConnection(GenericProvider.cs:336)
at
system.Data.ProviderBase.AbstractDBConnection.Open(AbstractDBConnection.cs:495)
at rdServer.rdSqlReader.(Unknown Source) at
rdServer.rdDb.access$4300(Unknown Source) at
rdServer.rdDb.CreateDataReader(Unknown Source) at
rdServer.rdDb.ProcessData(Unknown Source) at
rdServer.rdDb.ProcessDataLayerElement(Unknown Source) at
rdServer.rdDb.xmlGetData(Unknown Source) at
rdServer.rdDb9.xmlGetData(Unknown Source) at
rdServer.rdAnalysisGrid10.ResetData(Unknown Source) at
rdServer.rdAnalysisGrid10.BuildAnalysisGrid(Unknown Source) at
rdServer.PageBuilder.sProcess_AnalysisGrid(Unknown Source) at
rdServer.PageBuilder.sProcessDefinitionElement(Unknown Source) at
rdServer.PageBuilder.sProcessDefinitionElementChildren(Unknown Source)
at rdServer.PageBuilder.sProcess_Body(Unknown Source) at
rdServer.PageBuilder.sProcessDefinitionElement(Unknown Source) at
rdServer.PageBuilder.sProcessDefinitionElementChildren(Unknown Source)
at rdServer.PageBuilder.sProcess_Report(Unknown Source) at
rdServer.PageBuilder.sProcessDefinitionElement(Unknown Source) at
rdServer.PageBuilder.BuildHtml(Unknown Source) at
rdServer.ResponseBuilder.BuildResponse(Unknown Source) at
ASP.rdpage_aspx.__Render__control1(rdPage.aspx:4) at
ASP.rdpage_aspx$__Impl0.Invoke(Unknown Source) at
system.Web.UI.Control.RenderChildren(Control.cs:1101) at
system.Web.UI.Control.Render(Control.cs:1090) at
system.Web.UI.Page.Render(Page.cs:1095) at
system.Web.UI.Control.RenderControl(Control.cs:1254) at
system.Web.UI.Page.RenderPage(Page.cs:1621) at
system.Web.UI.Page.encodeChildren(Page.jvm.cs:159) at
Mainsoft.Web.Hosting.BaseFacesViewHandler.renderView(BaseFacesViewHandler.cs:58)
at
org.apache.myfaces.lifecycle.RenderResponseExecutor.execute(RenderResponseExecutor.java:41)
at
org.apache.myfaces.lifecycle.LifecycleImpl.render(LifecycleImpl.java:132)
at
Mainsoft.Web.Hosting.ServletFacesPageHandler.ProcessRequest(ServletFacesPageHandler.cs:116)
at
Mainsoft.Web.Hosting.SessionWrapper$SessionWrapperHandler.ProcessRequest(SessionWrapper.cs:40)
at
system.Web.HttpApplication$Pipelined__7.MoveNext$Z$$$Pipeline$$d__7$$(HttpApplication.cs:1033)
at system.Web.HttpApplication.Tick(HttpApplication.cs:705) at
system.Web.HttpApplication.Start(HttpApplication.cs:1217) at
system.Web.HttpApplication.System_Web_IHttpAsyncHandler_BeginProcessRequest(HttpApplication.cs:1319)
at system.Web.HttpRuntime.RealProcessRequest(HttpRuntime.cs:482) at
system.Web.HttpRuntime.ProcessRequest(HttpRuntime.cs:523) at
Mainsoft.Web.Hosting.BaseHttpServlet.service(BaseHttpServlet.cs:200)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:727) at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at
org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
at
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:501)
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171)
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
at
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
at
org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1040)
at
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:607)
at
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at
org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)

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import org.apache.spark.sql.SparkSession
val spark = SparkSession.builder().getOrCreate()
val df =
spark.read
.option("header","true")
.option("inferSchema","true")
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df.printSchema()
But i have an error saying 'df not found' and in the derby file i found a long error print starts like this :
> Fri Jun 22 17:43:27 CEST 2018 Thread[main,5,main] Cleanup action starting
java.sql.SQLException: Failed to start database 'metastore_db' with class loader org.apache.spark.sql.hive.client.IsolatedClientLoader$$anon$1#2c6d5b2e, see the next exception for details.
at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.seeNextException(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
at org.apache.derby.jdbc.InternalDriver$1.run(Unknown Source)
at org.apache.derby.jdbc.InternalDriver$1.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.derby.jdbc.InternalDriver.getNewEmbedConnection(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(Unknown Source)
at java.sql.DriverManager.getConnection(Unknown Source)
at com.jolbox.bonecp.BoneCP.obtainRawInternalConnection(BoneCP.java:349)
at com.jolbox.bonecp.BoneCP.<init>(BoneCP.java:416)
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at org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:298)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301)
at org.datanucleus.NucleusContext.createStoreManagerForProperties(NucleusContext.java:1187)
at org.datanucleus.NucleusContext.initialise(NucleusContext.java:356)
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at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960)
at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:76)
at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:136)
at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:620)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
at org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at org.apache.hadoop.hive.ql.metadata.Hive.getAllDatabases(Hive.java:1234)
at org.apache.hadoop.hive.ql.metadata.Hive.reloadFunctions(Hive.java:174)
at org.apache.hadoop.hive.ql.metadata.Hive.<clinit>(Hive.java:166)
at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503)
at org.apache.spark.sql.hive.client.HiveClientImpl.<init>(HiveClientImpl.scala:191)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at org.apache.spark.sql.hive.client.IsolatedClientLoader.createClient(IsolatedClientLoader.scala:264)
at org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:362)
at org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:266)
at org.apache.spark.sql.hive.HiveExternalCatalog.client$lzycompute(HiveExternalCatalog.scala:66)
at org.apache.spark.sql.hive.HiveExternalCatalog.client(HiveExternalCatalog.scala:65)
at org.apache.spark.sql.hive.HiveExternalCatalog$$anonfun$databaseExists$1.apply$mcZ$sp(HiveExternalCatalog.scala:195)
at org.apache.spark.sql.hive.HiveExternalCatalog$$anonfun$databaseExists$1.apply(HiveExternalCatalog.scala:195)
at org.apache.spark.sql.hive.HiveExternalCatalog$$anonfun$databaseExists$1.apply(HiveExternalCatalog.scala:195)
at org.apache.spark.sql.hive.HiveExternalCatalog.withClient(HiveExternalCatalog.scala:97)
at org.apache.spark.sql.hive.HiveExternalCatalog.databaseExists(HiveExternalCatalog.scala:194)
at org.apache.spark.sql.internal.SharedState.externalCatalog$lzycompute(SharedState.scala:105)
at org.apache.spark.sql.internal.SharedState.externalCatalog(SharedState.scala:93)
at org.apache.spark.sql.hive.HiveSessionStateBuilder.externalCatalog(HiveSessionStateBuilder.scala:39)
at org.apache.spark.sql.hive.HiveSessionStateBuilder.catalog$lzycompute(HiveSessionStateBuilder.scala:54)
at org.apache.spark.sql.hive.HiveSessionStateBuilder.catalog(HiveSessionStateBuilder.scala:52)
at org.apache.spark.sql.hive.HiveSessionStateBuilder.catalog(HiveSessionStateBuilder.scala:35)
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at org.apache.spark.sql.SparkSession$.org$apache$spark$sql$SparkSession$$instantiateSessionState(SparkSession.scala:1059)
at org.apache.spark.sql.SparkSession$$anonfun$sessionState$2.apply(SparkSession.scala:137)
at org.apache.spark.sql.SparkSession$$anonfun$sessionState$2.apply(SparkSession.scala:136)
at scala.Option.getOrElse(Option.scala:121)
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at org.apache.spark.sql.SparkSession.sessionState(SparkSession.scala:133)
at org.apache.spark.sql.DataFrameReader.<init>(DataFrameReader.scala:689)
at org.apache.spark.sql.SparkSession.read(SparkSession.scala:645)
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at $line35.$read$$iw$$iw$$iw$$iw$$iw$$iw$$iw$$iw$$iw.<init>(<console>:35)
at $line35.$read$$iw$$iw$$iw$$iw$$iw$$iw$$iw$$iw.<init>(<console>:37)
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at $line35.$read$.<clinit>(<console>)
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at scala.tools.nsc.interpreter.ILoop.processLine(ILoop.scala:395)
at scala.tools.nsc.interpreter.ILoop.loop(ILoop.scala:415)
at scala.tools.nsc.interpreter.ILoop$$anonfun$interpretAllFrom$1$$anonfun$apply$5$$anonfun$apply$6.apply(ILoop.scala:427)
at scala.tools.nsc.interpreter.ILoop$$anonfun$interpretAllFrom$1$$anonfun$apply$5$$anonfun$apply$6.apply(ILoop.scala:423)
at scala.reflect.io.Streamable$Chars$class.applyReader(Streamable.scala:111)
at scala.reflect.io.File.applyReader(File.scala:50)
at scala.tools.nsc.interpreter.ILoop$$anonfun$interpretAllFrom$1$$anonfun$apply$5.apply(ILoop.scala:423)
at scala.tools.nsc.interpreter.ILoop$$anonfun$interpretAllFrom$1$$anonfun$apply$5.apply(ILoop.scala:423)
at scala.tools.nsc.interpreter.ILoop.savingReplayStack(ILoop.scala:91)
at scala.tools.nsc.interpreter.ILoop$$anonfun$interpretAllFrom$1.apply(ILoop.scala:422)
at scala.tools.nsc.interpreter.ILoop$$anonfun$interpretAllFrom$1.apply(ILoop.scala:422)
at scala.tools.nsc.interpreter.ILoop.savingReader(ILoop.scala:96)
at scala.tools.nsc.interpreter.ILoop.interpretAllFrom(ILoop.scala:421)
at scala.tools.nsc.interpreter.ILoop$$anonfun$run$3$1.apply(ILoop.scala:577)
at scala.tools.nsc.interpreter.ILoop$$anonfun$run$3$1.apply(ILoop.scala:576)
at scala.tools.nsc.interpreter.ILoop.withFile(ILoop.scala:570)
at scala.tools.nsc.interpreter.ILoop.run$3(ILoop.scala:576)
at scala.tools.nsc.interpreter.ILoop.loadCommand(ILoop.scala:583)
at scala.tools.nsc.interpreter.ILoop$$anonfun$standardCommands$8.apply(ILoop.scala:207)
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
at org.apache.derby.impl.services.monitor.FileMonitor.startModule(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
at org.apache.derby.impl.store.access.RAMAccessManager$5.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.derby.impl.store.access.RAMAccessManager.bootServiceModule(Unknown Source)
at org.apache.derby.impl.store.access.RAMAccessManager.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startModule(Unknown Source)
at org.apache.derby.impl.services.monitor.FileMonitor.startModule(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.bootServiceModule(Unknown Source)
at org.apache.derby.impl.db.BasicDatabase$5.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.derby.impl.db.BasicDatabase.bootServiceModule(Unknown Source)
at org.apache.derby.impl.db.BasicDatabase.bootStore(Unknown Source)
at org.apache.derby.impl.db.BasicDatabase.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.boot(Unknown Source)
at org.apache.derby.impl.services.monitor.TopService.bootModule(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.bootService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startProviderService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.findProviderAndStartService(Unknown Source)
at org.apache.derby.impl.services.monitor.BaseMonitor.startPersistentService(Unknown Source)
at org.apache.derby.iapi.services.monitor.Monitor.startPersistentService(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection$4.run(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection$4.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.derby.impl.jdbc.EmbedConnection.startPersistentService(Unknown Source)
... 171 more
============= begin nested exception, level (1) ===========
java.sql.SQLException: Another instance of Derby may have already booted the database D:\Spark-Scala\Projet-test\metastore_db.
at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
at org.apache.derby.jdbc.InternalDriver$1.run(Unknown Source)
at org.apache.derby.jdbc.InternalDriver$1.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.derby.jdbc.InternalDriver.getNewEmbedConnection(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(Unknown Source)
at java.sql.DriverManager.getConnection(Unknown Source)
at com.jolbox.bonecp.BoneCP.obtainRawInternalConnection(BoneCP.java:349)
at com.jolbox.bonecp.BoneCP.<init>(BoneCP.java:416)
at com.jolbox.bonecp.BoneCPDataSource.getConnection(BoneCPDataSource.java:120)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl$ManagedConnectionImpl.getConnection(ConnectionFactoryImpl.java:501)
at org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:298)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301)
at org.datanucleus.NucleusContext.createStoreManagerForProperties(NucleusContext.java:1187)
at org.datanucleus.NucleusContext.initialise(NucleusContext.java:356)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:775)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:333)
at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:202)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960)
at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365)
at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394)
at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291)
at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:76)
at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:136)
at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:620)
at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
at org.apache.derby.jdbc.InternalDriver$1.run(Unknown Source)
at org.apache.derby.jdbc.InternalDriver$1.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at org.apache.derby.jdbc.InternalDriver.getNewEmbedConnection(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(Unknown Source)
at java.sql.DriverManager.getConnection(Unknown Source)
at com.jolbox.bonecp.BoneCP.obtainRawInternalConnection(BoneCP.java:349)
at com.jolbox.bonecp.BoneCP.<init>(BoneCP.java:416)
at com.jolbox.bonecp.BoneCPDataSource.getConnection(BoneCPDataSource.java:120)
at org.datanucleus.store.rdbms.ConnectionFactoryImpl$ManagedConnectionImpl.getConnection(ConnectionFactoryImpl.java:501)
at org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:298)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
org.apache.spark.sql.hive.HiveSessionStateBuilder.catalog(HiveSessionStateBuilder.scala:35)
at org.apache.spark.sql.internal.BaseSessionStateBuilder.build(BaseSessionStateBuilder.scala:289)
at org.apache.spark.sql.SparkSession$.org$apache$spark$sql$SparkSession$$instantiateSessionState(SparkSession.scala:1059)
at org.apache.spark.sql.SparkSession$$anonfun$sessionState$2.apply(SparkSession.scala:137)
at org.apache.spark.sql.SparkSession$$anonfun$sessionState$2.apply(SparkSession.scala:136)
at scala.Option.getOrElse(Option.scala:121)
at org.apache.spark.sql.SparkSession.sessionState$lzycompute(SparkSession.scala:136)
at org.apache.spark.sql.SparkSession.sessionState(SparkSession.scala:133)
at org.apache.spark.sql.DataFrameReader.<init>(DataFrameReader.scala:689)
at org.apache.spark.sql.SparkSession.read(SparkSession.scala:645)
at $line35.$read$$iw$$iw$$iw$$iw$$iw$$iw$$iw$$iw$$iw$$iw.<init>(<console>:30)
at $line35.$read$$iw$$iw$$iw$$iw$$iw$$iw$$iw$$iw$$iw.<init>(<console>:35)
at $line35.$read$$iw$$iw$$iw$$iw$$iw$$iw$$iw$$iw.<init>(<console>:37)
at $line35.$read$$iw$$iw$$iw$$iw$$iw$$iw$$iw.<init>(<console>:39)
at $line35.$read$$iw$$iw$$iw$$iw$$iw$$iw.<init>(<console>:41)
at $line35.$read$$iw$$iw$$iw$$iw$$iw.<init>(<console>:43)
at $line35.$read$$iw$$iw$$iw$$iw.<init>(<console>:45)
at $line35.$read$$iw$$iw$$iw.<init>(<console>:47)
at $line35.$read$$iw$$iw.<init>(<console>:49)
at $line35.$read$$iw.<init>(<console>:51)
at $line35.$read.<init>(<console>:53)
at $line35.$read$.<init>(<console>:57)
at $line35.$read$.<clinit>(<console>)
at $line35.$eval$.$print$lzycompute(<console>:7)
at $line35.$eval$.$print(<console>:6)
at $line35.$eval.$print(<console>)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at scala.tools.nsc.interpreter.IMain$ReadEvalPrint.call(IMain.scala:786)
at scala.tools.nsc.interpreter.IMain$Request.loadAndRun(IMain.scala:1047)
at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:638)
at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:637)
at scala.reflect.internal.util.ScalaClassLoader$class.asContext(ScalaClassLoader.scala:31)
at scala.reflect.internal.util.AbstractFileClassLoader.asContext(AbstractFileClassLoader.scala:19)
at scala.tools.nsc.interpreter.IMain$WrappedRequest.loadAndRunReq(IMain.scala:637)
at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:569)
at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:565)
at scala.tools.nsc.interpreter.ILoop.interpretStartingWith(ILoop.scala:807)
at scala.tools.nsc.interpreter.ILoop.command(ILoop.scala:681)
at scala.tools.nsc.interpreter.ILoop.processLine(ILoop.scala:395)
at scala.tools.nsc.interpreter.ILoop.loop(ILoop.scala:415)
at scala.tools.nsc.interpreter.ILoop$$anonfun$interpretAllFrom$1$$anonfun$apply$5$$anonfun$apply$6.apply(ILoop.scala:427)
at scala.tools.nsc.interpreter.ILoop$$anonfun$interpretAllFrom$1$$anonfun$apply$5$$anonfun$apply$6.apply(ILoop.scala:423)
at scala.reflect.io.Streamable$Chars$class.applyReader(Streamable.scala:111)
at scala.reflect.io.File.applyReader(File.scala:50)
at scala.tools.nsc.interpreter.ILoop$$anonfun$interpretAllFrom$1$$anonfun$apply$5.apply(ILoop.scala:423)
at scala.tools.nsc.interpreter.ILoop$$anonfun$interpretAllFrom$1$$anonfun$apply$5.apply(ILoop.scala:423)
at scala.tools.nsc.interpreter.ILoop.savingReplayStack(ILoop.scala:91)
at scala.tools.nsc.interpreter.ILoop$$anonfun$interpretAllFrom$1.apply(ILoop.scala:422)
at scala.tools.nsc.interpreter.ILoop$$anonfun$interpretAllFrom$1.apply(ILoop.scala:422)
at scala.tools.nsc.interpreter.ILoop.savingReader(ILoop.scala:96)
at scala.tools.nsc.interpreter.ILoop.interpretAllFrom(ILoop.scala:421)
at scala.tools.nsc.interpreter.ILoop$$anonfun$run$3$1.apply(ILoop.scala:577)
at scala.tools.nsc.interpreter.ILoop$$anonfun$run$3$1.apply(ILoop.scala:576)
at scala.tools.nsc.interpreter.ILoop.withFile(ILoop.scala:570)
at scala.tools.nsc.interpreter.ILoop.run$3(ILoop.scala:576)
at scala.tools.nsc.interpreter.ILoop.loadCommand(ILoop.scala:583)
at scala.tools.nsc.interpreter.ILoop$$anonfun$standardCommands$8.apply(ILoop.scala:207)
at scala.tools.nsc.interpreter.ILoop$$anonfun$standardCommands$8.apply(ILoop.scala:207)
at scala.tools.nsc.interpreter.LoopCommands$LineCmd.apply(LoopCommands.scala:62)
at scala.tools.nsc.interpreter.ILoop.colonCommand(ILoop.scala:688)
at scala.tools.nsc.interpreter.ILoop.command(ILoop.scala:679)
at scala.tools.nsc.interpreter.ILoop.processLine(ILoop.scala:395)
at scala.tools.nsc.interpreter.ILoop.loop(ILoop.scala:415)
at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply$mcZ$sp(ILoop.scala:923)
at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:909)
at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:909)
at scala.reflect.internal.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:97)
at scala.tools.nsc.interpreter.ILoop.process(ILoop.scala:909)
at org.apache.spark.repl.Main$.doMain(Main.scala:74)
at org.apache.spark.repl.Main$.main(Main.scala:54)
at org.apache.spark.repl.Main.main(Main.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:775)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:180)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:205)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:119)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
============= end nested exception, level (2) ===========
Cleanup action completed
you have missed the option below while creating spark session
.master(“local[*]”).appName(“test”)
add this and try
Issue :
java.sql.SQLException: Another instance of Derby may have already
booted the database D:\Spark-Scala\Projet-test\metastore_db.
This issue happens because of Metastore_db.
Metastore_db created everytime when the spark shell is looking for db and start registering it.
First check you should have read write permission
Then Remove "Metastore_db"
If you are not able to delete then first delete metastore_db/dbex.lck
then after you can delete the metastore_db folder
Now come to your code :
Though code is not creating issue here however sharing sample here
import org.apache.spark.sql.SparkSession
import sparkSession.implicits._
val sparkContext = sparkSession.sparkContext
SparkSession spark = SparkSession
.builder()
.appName("VaquarKhan-Example")
.master("local[4]")
.getOrCreate();
val df = sparkSession.read
.format("com.databricks.spark.csv")
.option("header","true")
.schema(customSchema)
.option("inferSchema","true")
.csv("CitiGroup")
df.printSchema()

Kettle - connect to MySQL still not working even after adding the MySQL driver

Apologies for this post, I am sure that it has been answered numerous time but despite all the reading I have done I am not able to connect the PDI to MySQL.
I am using pdi-6.1.0.1-196-x64, I have downloaded the JDBC connecter http://dev.mysql.com/downloads/connector/j/, unzipped it and copy the mysql-connector-java-5.1.39-bin.jar file into /Users/jdrhlik/Downloads/Desktop/DataIntegration/design-tools/data-integration/lib
Then I had re started the PDI. Unfortunately getting still same error. Please see below.
Any help?
ERROR MESSAGE:
Error connecting to database [AWS MySQL] : org.pentaho.di.core.exception.KettleDatabaseException:
Error occurred while trying to connect to the database
Error connecting to database: (using class org.gjt.mm.mysql.Driver)
Cannot load connection class because of underlying exception: 'java.lang.NumberFormatException: For input string: "cbi-solution-instance.caowhklkpbrk.ap-southeast-2.rds.amazonaws.com:3306"'.
org.pentaho.di.core.exception.KettleDatabaseException:
Error occurred while trying to connect to the database
Error connecting to database: (using class org.gjt.mm.mysql.Driver)
Cannot load connection class because of underlying exception: 'java.lang.NumberFormatException: For input string: "cbi-solution-instance.caowhklkpbrk.ap-southeast-2.rds.amazonaws.com:3306"'.
at org.pentaho.di.core.database.Database.normalConnect(Database.java:466)
at org.pentaho.di.core.database.Database.connect(Database.java:364)
at org.pentaho.di.core.database.Database.connect(Database.java:335)
at org.pentaho.di.core.database.Database.connect(Database.java:325)
at org.pentaho.di.core.database.DatabaseFactory.getConnectionTestReport(DatabaseFactory.java:80)
at org.pentaho.di.core.database.DatabaseMeta.testConnection(DatabaseMeta.java:2734)
at org.pentaho.ui.database.event.DataHandler.testDatabaseConnection(DataHandler.java:591)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.pentaho.ui.xul.impl.AbstractXulDomContainer.invoke(AbstractXulDomContainer.java:313)
at org.pentaho.ui.xul.impl.AbstractXulComponent.invoke(AbstractXulComponent.java:157)
at org.pentaho.ui.xul.impl.AbstractXulComponent.invoke(AbstractXulComponent.java:141)
at org.pentaho.ui.xul.swt.tags.SwtButton.access$500(SwtButton.java:43)
at org.pentaho.ui.xul.swt.tags.SwtButton$4.widgetSelected(SwtButton.java:137)
at org.eclipse.swt.widgets.TypedListener.handleEvent(Unknown Source)
at org.eclipse.swt.widgets.EventTable.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Display.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Widget.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Widget.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Widget.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Widget.notifyListeners(Unknown Source)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Unknown Source)
at org.eclipse.swt.widgets.Display.readAndDispatch(Unknown Source)
at org.eclipse.jface.window.Window.runEventLoop(Window.java:820)
at org.eclipse.jface.window.Window.open(Window.java:796)
at org.pentaho.di.ui.xul.KettleDialog.show(KettleDialog.java:88)
at org.pentaho.di.ui.xul.KettleDialog.show(KettleDialog.java:55)
at org.pentaho.di.ui.core.database.dialog.XulDatabaseDialog.open(XulDatabaseDialog.java:116)
at org.pentaho.di.ui.core.database.dialog.DatabaseDialog.open(DatabaseDialog.java:60)
at org.pentaho.di.ui.trans.step.BaseStepDialog.showDbDialogUnlessCancelledOrValid(BaseStepDialog.java:776)
at org.pentaho.di.ui.trans.step.BaseStepDialog$EditConnectionListener.widgetSelected(BaseStepDialog.java:1393)
at org.eclipse.swt.widgets.TypedListener.handleEvent(Unknown Source)
at org.eclipse.swt.widgets.EventTable.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Display.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Widget.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Widget.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Widget.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Widget.notifyListeners(Unknown Source)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Unknown Source)
at org.eclipse.swt.widgets.Display.readAndDispatch(Unknown Source)
at org.pentaho.di.ui.trans.steps.sql.ExecSQLDialog.open(ExecSQLDialog.java:598)
at org.pentaho.di.ui.spoon.delegates.SpoonStepsDelegate.editStep(SpoonStepsDelegate.java:125)
at org.pentaho.di.ui.spoon.Spoon.editStep(Spoon.java:8783)
at org.pentaho.di.ui.spoon.trans.TransGraph.editStep(TransGraph.java:3072)
at org.pentaho.di.ui.spoon.trans.TransGraph.mouseDoubleClick(TransGraph.java:755)
at org.eclipse.swt.widgets.TypedListener.handleEvent(Unknown Source)
at org.eclipse.swt.widgets.EventTable.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Display.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Widget.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Widget.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Widget.sendEvent(Unknown Source)
at org.eclipse.swt.widgets.Widget.notifyListeners(Unknown Source)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Unknown Source)
at org.eclipse.swt.widgets.Display.readAndDispatch(Unknown Source)
at org.pentaho.di.ui.spoon.Spoon.readAndDispatch(Spoon.java:1347)
at org.pentaho.di.ui.spoon.Spoon.waitForDispose(Spoon.java:7989)
at org.pentaho.di.ui.spoon.Spoon.start(Spoon.java:9269)
at org.pentaho.di.ui.spoon.Spoon.main(Spoon.java:662)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.pentaho.commons.launcher.Launcher.main(Launcher.java:92)
Caused by: org.pentaho.di.core.exception.KettleDatabaseException:
Error connecting to database: (using class org.gjt.mm.mysql.Driver)
Cannot load connection class because of underlying exception: 'java.lang.NumberFormatException: For input string: "cbi-solution-instance.caowhklkpbrk.ap-southeast-2.rds.amazonaws.com:3306"'.
at org.pentaho.di.core.database.Database.connectUsingClass(Database.java:579)
at org.pentaho.di.core.database.Database.normalConnect(Database.java:450)
... 64 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException: Cannot load connection class because of underlying exception: 'java.lang.NumberFormatException: For input string: "cbi-solution-instance.caowhklkpbrk.ap-southeast-2.rds.amazonaws.com:3306"'.
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:404)
at com.mysql.jdbc.Util.getInstance(Util.java:387)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:917)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:896)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:885)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:860)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:336)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at org.pentaho.di.core.database.Database.connectUsingClass(Database.java:561)
... 65 more
Caused by: java.lang.NumberFormatException: For input string: "cbi-solution-instance.caowhklkpbrk.ap-southeast-2.rds.amazonaws.com:3306"
at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
at java.lang.Integer.parseInt(Integer.java:580)
at java.lang.Integer.parseInt(Integer.java:615)
at com.mysql.jdbc.NonRegisteringDriver.port(NonRegisteringDriver.java:823)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:328)
... 68 more
I think you should remove the version number and bin extension from the JDBC driver (at least that did the trick for me).
cp mysql-connector-java-5.1.39-bin.jar /Users/jdrhlik/Downloads/Desktop/DataIntegration/design-tools/data-integration/lib/mysql-connector-java.jar

java.lang.IllegalArgumentException: Named query not found: LOAD DATA INFILE

I am desperately hoping that someone could help shine some light on this for me as I have been struggling to find the solution for several hours and not getting anywhere.
I have problem in the SQL requette : LOAD DATA INFILE and i don't know the cause !
java.lang.IllegalArgumentException: Named query not found: LOAD DATA INFILE 'C:/Users/DELL/Desktop/stage11111/Gabits/src/main/test' INTO TABLE Transaction FIELDS TERMINATED BY ';'
at org.hibernate.ejb.AbstractEntityManagerImpl.createNamedQuery(AbstractEntityManagerImpl.java:455)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.springframework.orm.jpa.SharedEntityManagerCreator$SharedEntityManagerInvocationHandler.invoke(SharedEntityManagerCreator.java:241)
at $Proxy22.createNamedQuery(Unknown Source)
at com.bits.gabrent.dao.GabDaoImpl.addTr(GabDaoImpl.java:191)
at com.bits.gabrent.metier.GabMetierImpl.addTr(GabMetierImpl.java:173)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:96)
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:260)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:94)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204)
at $Proxy24.addTr(Unknown Source)
at com.bits.gabrent.controllers.UploadController.fileUploaded(UploadController.java:76)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.springframework.web.method.support.InvocableHandlerMethod.invoke(InvocableHandlerMethod.java:219)
at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:132)
at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:104)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandleMethod(RequestMappingHandlerAdapter.java:745)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:686)
at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:80)
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:925)
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:856)
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:936)
at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:838)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:648)
at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:812)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:729)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:291)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:219)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79)
at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:617)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:668)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1527)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1484)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Unknown Source)
This is my requette :
Query req=em.createNamedQuery("LOAD DATA INFILE 'C:/Users/DELL/Desktop/stage11111/Gabits/src/main/test' INTO TABLE Transaction FIELDS TERMINATED BY ';' LINES TERMINATED BY '\r\n'");
Please help me !
Thanks
It looks like you are calling the wrong EntityManager method.
From the JavaDoc of the method you are calling:
Query createNamedQuery(String name)
Create an instance of Query for executing a named query (in the Java Persistence query language or in native SQL).
Parameters:
name - the name of a query defined in metadata
Returns:
the new query instance
What I think you are wanting to call:
Query createNativeQuery(String sqlString)
Create an instance of Query for executing a native SQL statement, e.g., for update or delete.
Parameters:
sqlString - a native SQL query string
Returns:
the new query instance

Hibernate Database connection Error

I am new to hibernate, I have created a rest web service for login page. I am using hibernate with JDBC for database connectivity. I am using MYSQL database.My web service works fine when I retrieve data from localhost mysql. But,I want to access data from the unix server (MYSQL). When I try to access the database from unix server, I am getting the following error:
Jul 13, 2015 11:02:01 AM com.sun.jersey.spi.container.ContainerResponse mapMappableContainerException
SEVERE: The RuntimeException could not be mapped to a response, re-throwing to the HTTP container
org.hibernate.exception.JDBCConnectionException: Cannot open connection
at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:74)
at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43)
at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:29)
at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:420)
at org.hibernate.jdbc.ConnectionManager.getConnection(ConnectionManager.java:144)
at org.hibernate.jdbc.JDBCContext.connection(JDBCContext.java:119)
at org.hibernate.transaction.JDBCTransaction.begin(JDBCTransaction.java:57)
at org.hibernate.impl.SessionImpl.beginTransaction(SessionImpl.java:1326)
at dao.Database.DbConnection(Database.java:27)
at webservice.Login.Login_check(Login.java:30)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at com.sun.jersey.spi.container.JavaMethodInvokerFactory$1.invoke(JavaMethodInvokerFactory.java:60)
at com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$ResponseOutInvoker._dispatch(AbstractResourceMethodDispatchProvider.java:205)
at com.sun.jersey.server.impl.model.method.dispatch.ResourceJavaMethodDispatcher.dispatch(ResourceJavaMethodDispatcher.java:75)
at com.sun.jersey.server.impl.uri.rules.HttpMethodRule.accept(HttpMethodRule.java:302)
at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at com.sun.jersey.server.impl.uri.rules.ResourceClassRule.accept(ResourceClassRule.java:108)
at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at com.sun.jersey.server.impl.uri.rules.RootResourceClassesRule.accept(RootResourceClassesRule.java:84)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1542)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1473)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1419)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1409)
at com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:409)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:540)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:715)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:728)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:100)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:953)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1041)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:603)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: com.mysql.jdbc.CommunicationsException: Communications link failure due to underlying exception:
** BEGIN NESTED EXCEPTION **
java.net.SocketException
MESSAGE: java.net.ConnectException: Connection refused: connect
STACKTRACE:
java.net.SocketException: java.net.ConnectException: Connection refused: connect
at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:156)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:283)
at com.mysql.jdbc.Connection.createNewIO(Connection.java:2541)
at com.mysql.jdbc.Connection.<init>(Connection.java:1474)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:264)
at java.sql.DriverManager.getConnection(Unknown Source)
at java.sql.DriverManager.getConnection(Unknown Source)
at org.hibernate.connection.DriverManagerConnectionProvider.getConnection(DriverManagerConnectionProvider.java:110)
at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:417)
at org.hibernate.jdbc.ConnectionManager.getConnection(ConnectionManager.java:144)
at org.hibernate.jdbc.JDBCContext.connection(JDBCContext.java:119)
at org.hibernate.transaction.JDBCTransaction.begin(JDBCTransaction.java:57)
at org.hibernate.impl.SessionImpl.beginTransaction(SessionImpl.java:1326)
at dao.Database.DbConnection(Database.java:27)
at webservice.Login.Login_check(Login.java:30)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at com.sun.jersey.spi.container.JavaMethodInvokerFactory$1.invoke(JavaMethodInvokerFactory.java:60)
at com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$ResponseOutInvoker._dispatch(AbstractResourceMethodDispatchProvider.java:205)
at com.sun.jersey.server.impl.model.method.dispatch.ResourceJavaMethodDispatcher.dispatch(ResourceJavaMethodDispatcher.java:75)
at com.sun.jersey.server.impl.uri.rules.HttpMethodRule.accept(HttpMethodRule.java:302)
at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at com.sun.jersey.server.impl.uri.rules.ResourceClassRule.accept(ResourceClassRule.java:108)
at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at com.sun.jersey.server.impl.uri.rules.RootResourceClassesRule.accept(RootResourceClassesRule.java:84)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1542)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1473)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1419)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1409)
at com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:409)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:540)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:715)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:728)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:100)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:953)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1041)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:603)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
** END NESTED EXCEPTION **
Last packet sent to the server was 0 ms ago.
at com.mysql.jdbc.Connection.createNewIO(Connection.java:2607)
at com.mysql.jdbc.Connection.<init>(Connection.java:1474)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:264)
at java.sql.DriverManager.getConnection(Unknown Source)
at java.sql.DriverManager.getConnection(Unknown Source)
at org.hibernate.connection.DriverManagerConnectionProvider.getConnection(DriverManagerConnectionProvider.java:110)
at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:417)
... 45 more
Jul 13, 2015 11:02:01 AM org.apache.catalina.core.StandardWrapperValve invoke
SEVERE: Servlet.service() for servlet [ServletAdaptor] in context with path [/Automation_test1] threw exception
org.hibernate.exception.JDBCConnectionException: Cannot open connection
at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:74)
at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43)
at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:29)
at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:420)
at org.hibernate.jdbc.ConnectionManager.getConnection(ConnectionManager.java:144)
at org.hibernate.jdbc.JDBCContext.connection(JDBCContext.java:119)
at org.hibernate.transaction.JDBCTransaction.begin(JDBCTransaction.java:57)
at org.hibernate.impl.SessionImpl.beginTransaction(SessionImpl.java:1326)
at dao.Database.DbConnection(Database.java:27)
at webservice.Login.Login_check(Login.java:30)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at com.sun.jersey.spi.container.JavaMethodInvokerFactory$1.invoke(JavaMethodInvokerFactory.java:60)
at com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$ResponseOutInvoker._dispatch(AbstractResourceMethodDispatchProvider.java:205)
at com.sun.jersey.server.impl.model.method.dispatch.ResourceJavaMethodDispatcher.dispatch(ResourceJavaMethodDispatcher.java:75)
at com.sun.jersey.server.impl.uri.rules.HttpMethodRule.accept(HttpMethodRule.java:302)
at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at com.sun.jersey.server.impl.uri.rules.ResourceClassRule.accept(ResourceClassRule.java:108)
at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at com.sun.jersey.server.impl.uri.rules.RootResourceClassesRule.accept(RootResourceClassesRule.java:84)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1542)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1473)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1419)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1409)
at com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:409)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:540)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:715)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:728)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:100)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:953)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1041)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:603)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: com.mysql.jdbc.CommunicationsException: Communications link failure due to underlying exception:
** BEGIN NESTED EXCEPTION **
java.net.SocketException
MESSAGE: java.net.ConnectException: Connection refused: connect
STACKTRACE:
java.net.SocketException: java.net.ConnectException: Connection refused: connect
at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:156)
at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:283)
at com.mysql.jdbc.Connection.createNewIO(Connection.java:2541)
at com.mysql.jdbc.Connection.<init>(Connection.java:1474)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:264)
at java.sql.DriverManager.getConnection(Unknown Source)
at java.sql.DriverManager.getConnection(Unknown Source)
at org.hibernate.connection.DriverManagerConnectionProvider.getConnection(DriverManagerConnectionProvider.java:110)
at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:417)
at org.hibernate.jdbc.ConnectionManager.getConnection(ConnectionManager.java:144)
at org.hibernate.jdbc.JDBCContext.connection(JDBCContext.java:119)
at org.hibernate.transaction.JDBCTransaction.begin(JDBCTransaction.java:57)
at org.hibernate.impl.SessionImpl.beginTransaction(SessionImpl.java:1326)
at dao.Database.DbConnection(Database.java:27)
at webservice.Login.Login_check(Login.java:30)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at com.sun.jersey.spi.container.JavaMethodInvokerFactory$1.invoke(JavaMethodInvokerFactory.java:60)
at com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$ResponseOutInvoker._dispatch(AbstractResourceMethodDispatchProvider.java:205)
at com.sun.jersey.server.impl.model.method.dispatch.ResourceJavaMethodDispatcher.dispatch(ResourceJavaMethodDispatcher.java:75)
at com.sun.jersey.server.impl.uri.rules.HttpMethodRule.accept(HttpMethodRule.java:302)
at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at com.sun.jersey.server.impl.uri.rules.ResourceClassRule.accept(ResourceClassRule.java:108)
at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at com.sun.jersey.server.impl.uri.rules.RootResourceClassesRule.accept(RootResourceClassesRule.java:84)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1542)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1473)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1419)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1409)
at com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:409)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:540)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:715)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:728)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:100)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:953)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1041)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:603)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
** END NESTED EXCEPTION **
Last packet sent to the server was 0 ms ago.
at com.mysql.jdbc.Connection.createNewIO(Connection.java:2607)
at com.mysql.jdbc.Connection.<init>(Connection.java:1474)
at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:264)
at java.sql.DriverManager.getConnection(Unknown Source)
at java.sql.DriverManager.getConnection(Unknown Source)
at org.hibernate.connection.DriverManagerConnectionProvider.getConnection(DriverManagerConnectionProvider.java:110)
at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:417)
... 45 more
Jul 13, 2015 11:02:39 AM org.apache.catalina.core.StandardContext reload
INFO: Reloading Context with name [/Automation_test1] has started
Jul 13, 2015 11:02:39 AM org.apache.catalina.loader.WebappClassLoader clearReferencesJdbc
SEVERE: The web application [/Automation_test1] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
Jul 13, 2015 11:02:40 AM org.apache.catalina.loader.WebappClassLoader validateJarFile
INFO: validateJarFile(C:\java_workspace\.metadata\.plugins\org.eclipse.wst.server.core\tmp0\wtpwebapps\Automation_test1\WEB-INF\lib\servlet-api.jar) - jar not loaded. See Servlet Spec 2.3, section 9.7.2. Offending class: javax/servlet/Servlet.class
Jul 13, 2015 11:02:41 AM org.apache.catalina.startup.TaglibUriRule body
INFO: TLD skipped. URI: urn:com:sun:jersey:api:view is already defined
Jul 13, 2015 11:02:41 AM com.sun.jersey.api.core.servlet.WebAppResourceConfig init
INFO: Scanning for root resource and provider classes in the Web app resource paths:
/WEB-INF/lib
/WEB-INF/classes
Jul 13, 2015 11:02:41 AM com.sun.jersey.api.core.ScanningResourceConfig logClasses
INFO: Root resource classes found:
class webservice.Login
Jul 13, 2015 11:02:41 AM com.sun.jersey.api.core.ScanningResourceConfig logClasses
INFO: Provider classes found:
class org.codehaus.jackson.jaxrs.JacksonJsonProvider
class org.codehaus.jackson.jaxrs.JsonMappingExceptionMapper
class org.codehaus.jackson.jaxrs.JacksonJaxbJsonProvider
class org.codehaus.jackson.jaxrs.JsonParseExceptionMapper
Jul 13, 2015 11:02:41 AM com.sun.jersey.server.impl.application.WebApplicationImpl _initiate
INFO: Initiating Jersey application, version 'Jersey: 1.18.1 02/19/2014 05:15 AM'
Jul 13, 2015 11:02:42 AM org.apache.catalina.core.StandardContext reload
INFO: Reloading Context with name [/Automation_test1] is completed
These need investigated:
1) server port (call it 3306, whatever) is not open (protected by server firewall)
2) server mysql my.conf needs to be tweaked setting bind-address to 0.0.0.0
This is because for security purposes it defaults to localhost until you change it (and do a mysqld restart). Also comment-out skip-networking if present.
3) mysql user grants need to allow dbuser to connect from host %.
GRANT ALL PRIVILEGES ON mydbname.* TO 'db-user-name'#'%'

java.lang.NoClassDefFoundError / ClassNotFoundException

I'm trying to run BIRT Servlet example:
http://onjava.com/pub/a/onjava/2006/07/26/deploying-birt.html?page=2
I think I added all required jars to buildpath of my project but I can't make this thing run for days now.
exception
javax.servlet.ServletException: Error instantiating servlet class WebReport
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:100)
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:929)
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:405)
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:269)
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:515)
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:300)
java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
java.lang.Thread.run(Unknown Source)
root cause
java.lang.NoClassDefFoundError: org/eclipse/birt/report/engine/api/IRenderOption
java.lang.Class.getDeclaredConstructors0(Native Method)
java.lang.Class.privateGetDeclaredConstructors(Unknown Source)
java.lang.Class.getConstructor0(Unknown Source)
java.lang.Class.newInstance0(Unknown Source)
java.lang.Class.newInstance(Unknown Source)
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:100)
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:929)
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:405)
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:269)
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:515)
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:300)
java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
java.lang.Thread.run(Unknown Source)
root cause
java.lang.ClassNotFoundException: org.eclipse.birt.report.engine.api.IRenderOption
org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1678)
org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1523)
java.lang.Class.getDeclaredConstructors0(Native Method)
java.lang.Class.privateGetDeclaredConstructors(Unknown Source)
java.lang.Class.getConstructor0(Unknown Source)
java.lang.Class.newInstance0(Unknown Source)
java.lang.Class.newInstance(Unknown Source)
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:100)
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:929)
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:405)
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:269)
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:515)
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:300)
java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
java.lang.Thread.run(Unknown Source)
Is there anything else I forgot to do?
Can you please help me understand this error and running the servlet? Thanks in advance!!
You have to make sure that the JAR file containing the class org.eclipse.birt.report.engine.api.IRenderOption is present inside WEB-INF/lib folder.