I recently discovered the following error in a log
Oct 14 10:21:43 squire-labs kernel: [4186256.684193] init: mysql main process (16331) terminated with status 1
Oct 14 10:21:43 squire-labs kernel: [4186256.684215] init: mysql main process ended, respawning
Oct 14 10:21:44 squire-labs kernel: [4186257.394474] type=1400 audit(1381738904.046:23): apparmor="STATUS" operation="profile_replace" name="/usr/sbin/mysqld" pid=28201 comm="apparmor_parser"
Oct 14 10:21:47 squire-labs /etc/mysql/debian-start[28254]: Upgrading MySQL tables if necessary.
Oct 14 10:21:47 squire-labs /etc/mysql/debian-start[28257]: /usr/bin/mysql_upgrade: the '--basedir' option is always ignored
Oct 14 10:21:47 squire-labs /etc/mysql/debian-start[28257]: Looking for 'mysql' as: /usr/bin/mysql
Oct 14 10:21:47 squire-labs /etc/mysql/debian-start[28257]: Looking for 'mysqlcheck' as: /usr/bin/mysqlcheck
Oct 14 10:21:47 squire-labs /etc/mysql/debian-start[28257]: This installation of MySQL is already upgraded to 5.5.29, use --force if you still need to run mysql_upgrade
Oct 14 10:21:47 squire-labs /etc/mysql/debian-start[28269]: Checking for insecure root accounts.
Oct 14 10:21:47 squire-labs /etc/mysql/debian-start[28274]: Triggering myisam-recover for all MyISAM tables
This happens often (at least 4 times a minute). I'm really not sure what might be causing this issue. Mysql is running on a production server, with enough disk space and memory. Up until yesterday we've never had any problems.
Any help will be much appreciated.
It turned out that one of my tables in one of the dbs was corrupted. This article proved to be very useful.
In the end, I simply made a mysqldump of the database and restored the dump to a new database. That solved the problem.
Related
I don't know exactly what I did wrong, but it's likely some 'chown' operation that I did. I was trying to allow the user&group mysql:mysql access to a /media/usb drive, but may have inadvertently changed something else.
When I do sudo systemctl start mysql.service I get an error. Upon examining with sudo systemctl status mysqld, I get the following:
mysql.service - MySQL Community Server
Loaded: loaded (/lib/systemd/system/mysql.service; enabled; vendor preset: enabled)
Active: activating (start-post) (Result: exit-code) since Fri 2020-06-19 08:11:01 EDT; 19s ago
Process: 15459 ExecStart=/usr/sbin/mysqld (code=exited, status=203/EXEC)
Process: 15444 ExecStartPre=/usr/share/mysql/mysql-systemd-start pre (code=exited, status=0/SUCCESS)
Main PID: 15459 (code=exited, status=203/EXEC); : 15460 (mysql-systemd-s)
Tasks: 2
Memory: 2.4M
CPU: 175ms
CGroup: /system.slice/mysql.service
└─control
├─15460 /bin/bash /usr/share/mysql/mysql-systemd-start post
└─15687 sleep 1
Jun 19 08:11:01 apil-dlrig systemd[1]: Starting MySQL Community Server...
Jun 19 08:11:01 apil-dlrig systemd[1]: mysql.service: Main process exited, code=exited, status=203/EXEC
When I check ownership on /var/lib/mysql, I get the following, which seems reasonable. I.e. user mysql has full ownership on this folder.
apil#apil-dlrig:~$ sudo ls -la /var/lib/mysql
total 176212
drwx------ 7 mysql mysql 4096 Jun 19 07:34 .
drwxr-xr-x 79 root root 4096 Oct 30 2019 ..
-rw-r----- 1 mysql mysql 56 Oct 20 2019 auto.cnf
-rw------- 1 mysql mysql 1680 Nov 22 2019 ca-key.pem
-rw-r--r-- 1 mysql mysql 1112 Nov 22 2019 ca.pem
-rw-r--r-- 1 mysql mysql 1112 Nov 22 2019 client-cert.pem
-rw------- 1 mysql mysql 1676 Nov 22 2019 client-key.pem
-rw-r--r-- 1 mysql mysql 0 May 5 06:38 debian-5.7.flag
drwxr-x--- 2 mysql mysql 4096 Jun 6 13:44 foo
-rw-r----- 1 mysql mysql 665 Jun 19 07:34 ib_buffer_pool
-rw-r----- 1 mysql mysql 79691776 Jun 19 07:34 ibdata1
-rw-r----- 1 mysql mysql 50331648 Jun 19 07:34 ib_logfile0
-rw-r----- 1 mysql mysql 50331648 Oct 20 2019 ib_logfile1
-rw-r----- 1 mysql mysql 155 Jun 16 07:23 keyring_backup
drwxr-x--- 2 mysql mysql 4096 May 5 06:38 mysql
-rw-r--r-- 1 mysql mysql 6 May 5 06:38 mysql_upgrade_info
drwxr-x--- 2 mysql mysql 4096 May 5 06:38 performance_schema
-rw------- 1 mysql mysql 1680 Nov 22 2019 private_key.pem
drwxr-x--- 2 mysql mysql 4096 Jun 16 07:25 prod
-rw-r--r-- 1 mysql mysql 452 Nov 22 2019 public_key.pem
-rw-r--r-- 1 mysql mysql 1112 Nov 22 2019 server-cert.pem
-rw------- 1 mysql mysql 1680 Nov 22 2019 server-key.pem
drwxr-x--- 2 mysql mysql 12288 Nov 22 2019 sys
The /etc/systemd/system/multi.user.wants.targets/mysql.service looks as the following. Nothing should've changed here, i.e. it is as default as MySQL comes.
# MySQL systemd service file
[Unit]
Description=MySQL Community Server
After=network.target
[Install]
WantedBy=multi-user.target
[Service]
User=mysql
Group=mysql
PermissionsStartOnly=true
ExecStartPre=/usr/share/mysql/mysql-systemd-start pre
ExecStart=/usr/sbin/mysqld
ExecStartPost=/usr/share/mysql/mysql-systemd-start post
TimeoutSec=600
Restart=on-failure
RuntimeDirectory=mysqld
RuntimeDirectoryMode=755
Wondering what could be going wrong. Any help would be appreciated.
Thanks
If you look at the original error, the issue is: ExecStart=/usr/sbin/mysqld (code=exited, status=203/EXEC). Looks like some kind of execution privilege for the mysqld file? Checked it too:
ls -la /usr/sbin/mysqld which returned
-rw-r--r-- 1 root root 24585896 Apr 30 10:52 /usr/sbin/mysqld
So the issue (I thought) was that user root didn't have the execute permission. Looks at the first three letters rw-. The last dash means no execution privilege.
So I simply ran the following chmod 777 /usr/sbin/mysqld, after which the ownership returns as
-rwxrwxrwx 1 root root 24585896 Apr 30 10:52 /usr/sbin/mysqld
Now, systemctl start mysql.service runs just fine.
It's amazing how simply the process of writing a question on stackoverflow actually helps me solve a problem 80% of the time. Thanks again, folks.
I have Percona MySQL server 5.7 running under CentOS 7 and although mysql is running without any noticeable errors, it is filling my /var/log/messages with the following every ten seconds:
Nov 15 10:07:27 server systemd: mysqld.service holdoff time over, scheduling restart.
Nov 15 10:07:27 server systemd: Starting MySQL Percona Server...
Nov 15 10:07:27 server mysqld_safe: 171115 10:07:27 mysqld_safe Adding '/usr/lib64/libjemalloc.so.1' to LD_PRELOAD for mysqld
Nov 15 10:07:27 server mysqld_safe: 171115 10:07:27 mysqld_safe Logging to '/var/lib/mysql/server.local.err'.
Nov 15 10:07:27 server mysqld_safe: 171115 10:07:27 mysqld_safe A mysqld process already exists
Nov 15 10:07:27 server systemd: mysqld.service: main process exited, code=exited, status=1/FAILURE
Nov 15 10:07:28 server systemd: Failed to start MySQL Percona Server.
Nov 15 10:07:28 server systemd: Unit mysqld.service entered failed state.
Nov 15 10:07:28 server systemd: Triggering OnFailure= dependencies of mysqld.service.
Nov 15 10:07:28 server systemd: mysqld.service failed.
Nov 15 10:07:28 server systemd: Started Service Status Monitor.
Nov 15 10:07:28 server systemd: Starting Service Status Monitor...
Even though it's stating in there that it failed to start the Percona server, it appears to be working as my website is still doing mysql queries. I know very little about mysql admin and was hoping a mysql guru could shed some light on what is happening.
The clue is here: "A mysqld process already exists". It can't start mysqld because another mysqld process is already running, and using the same port. You need to kill that process before the one you tried to start can start.
Re your comment:
Since this is CentOS 7, I assume mysql.service is being called by systemd.
In my experience, if you start mysqld "ad hoc" without using systemd, then systemd has no idea that it's running, and tries to start mysqld on its own. Systemd also cannot shut down an instance of mysqld unless it started that instance.
the mysqld process is active,ps -ef |grep mysqld ,kill -9 {}
This is awsome yesterday I got the same error and I debugged it but today I don't remember what to do since I did it to fast.
When I'm doing:
service mysql start
I get this message:
Job for mysql.service failed. See 'systemctl status mysql.service' and 'journalctl -xn' for details.
For this reason I did:
systemctl status mysql.service
and get:
Apr 16 18:11:25 darphus.xen.prgmr.com systemd[1]: Unit mysql.service entered failed state.
Apr 16 18:11:26 darphus.xen.prgmr.com systemd[1]: mysql.service holdoff time over, scheduling restart.
Apr 16 18:11:26 darphus.xen.prgmr.com systemd[1]: Stopping MySQL Community Server...
Apr 16 18:11:26 darphus.xen.prgmr.com systemd[1]: Starting MySQL Community Server...
Apr 16 18:11:26 darphus.xen.prgmr.com systemd[1]: mysql.service start request repeated too quickly, refusing to start.
Apr 16 18:11:26 darphus.xen.prgmr.com systemd[1]: Failed to start MySQL Community Server.
Apr 16 18:11:26 darphus.xen.prgmr.com systemd[1]: Unit mysql.service entered fai
journalctl -xn give:
Logs begin at Sun 2017-04-16 17:58:44 UTC, end at Sun 2017-04-16 18:16:35 UTC
Apr 16 18:16:34 darphus.xen.prgmr.com postfix/pickup[938]: warning: 868F625E66:
Apr 16 18:16:34 darphus.xen.prgmr.com postfix/pickup[938]: 868F625E66: uid=0 fro
Apr 16 18:16:34 darphus.xen.prgmr.com postfix/proxymap[941]: warning: mysql:/etc
Apr 16 18:16:34 darphus.xen.prgmr.com postfix/cleanup[1361]: warning: proxy:mysq
Apr 16 18:16:34 darphus.xen.prgmr.com postfix/cleanup[1361]: warning: 868F625E66
Apr 16 18:16:35 darphus.xen.prgmr.com postfix/pickup[938]: warning: 8744E25E66:
Apr 16 18:16:35 darphus.xen.prgmr.com postfix/pickup[938]: 8744E25E66: uid=0 fro
Apr 16 18:16:35 darphus.xen.prgmr.com postfix/proxymap[941]: warning: mysql:/etc
Apr 16 18:16:35 darphus.xen.prgmr.com postfix/cleanup[1362]: warning: proxy:mysq
Apr 16 18:16:35 darphus.xen.prgmr.com postfix/cleanup[1362]: warning: 8744E25E66
I think a tryed all the trick on the internet and nothing work for today.
Please help me since All my website are down for this reason.
The answer by #Lotfio Lakehal will fix your issues but should be considered a last resort - you certainly wouldn't want to run this on a database that had data you require as it will remove all your configuration values in the process. A better way would be to find out what is causing the issue in your my.cnf and fix it. MySQL has this ability built in.
mysqld --help --verbose
The above command will simulate starting your mysql server. If it can't it will give an error message and a description of what is wrong with the config files.
For instance I set up a test config file with some invalid data and when I ran the above command I got the following:
error: Found option without preceding group in config file: /etc/mysql/my.cnf at line: 22
This allows me to easily go to the configuration file and remove or edit the offending configuration, hopefully, allowing you to fix the said config file without having to do a full reinstall of the server.
Just to clarify this is in no way a put down on this answer, the previous answer will fix 99% of all issues but should be considered a last resort. Ideally, you want to fix the issue and understand why it occurred so you don't make the same mistakes in the future.
Usually this problem appears when you try to change something in the /etc/mysql/my.cnf.
WARNING
The following solution will delete all your database data! Try other solutions first.
Reinstalling MySQL may solve the problem, but should only be used as a last resort! To reinstall:
sudo apt purge mysql-server mysql-common
sudo apt autoremove mysql-server mysql-common
and reinstall it again
sudo apt-get update
sudo apt-get install mysql-server
check this out:
https://askubuntu.com/questions/392438/mysql-job-failed-to-start
note : This solution will delete all your database data ! So be aware of what you are doing .
I had the same problem running on ubuntu 18.04 with mysql 5.7. The first thing that I did was to go to mysql error log, it should be in /var/log/mysql/error.log.
There I found the following line:
[ERROR] InnoDB: Cannot allocate memory for the buffer pool
So looked like a memory issue, I checked the syslog for mentions of MySQL:
grep mysql syslog
Which displayed this:
kernel: [21270406.665399] Out of memory: Kill process 9674 (mysqld) score 251 or sacrifice child
I checked that I had ‘spare memory’ in the form of swap.
free -m
Which displayed this:
total used free shared buff/cache available
Mem: 985 522 69 45 393 276
Swap: 0 0 0
This meant that we have to setup swap space:
Swap: 0 0 0
In my case, mysql is on DigitalOcean and their guides are great so I defer you to the following:
How To Add Swap Space on Ubuntu 18.04
This answer should be read in conjunction with #"James Lendrem" answer.
If you changed or added anything to the mysql configuration files, try removing what you did.
First check the syslog file, which may give you a clue:
grep mysql /var/log/syslog | grep ERROR
This command searches the syslog for any reference to the term "mysql", and then limit those results to ones containing "ERROR".
Next look in the various config files. If you edited a specific config file, start there. Otherwise, look in all the config files in these directories:
ls -l /etc/mysql/*.cfg
ls -l /etc/mysql/mysql.conf.d/
ls -l /etc/mysql/conf.d/
If you change anything in any of the config files, (re)start the mysql server:
service mysql restart
# or else you could use for the first time:
service mysql start
I had the same problem running on ubuntu 18.04 with mysql 5.7
In log files I found the following lines:
Jul 13 01:25:35 r-lap audit[11196]: AVC apparmor="DENIED" operation="open" profile="/usr/sbin/mysqld" name="/sys/devices/system/node/" pid=11196 comm="mysqld" req
Jul 13 01:25:35 r-lap kernel: audit: type=1400 audit(1531425335.671:116): apparmor="DENIED" operation="open" profile="/usr/sbin/mysqld" name="/sys/devices/system/
On stopping apparmor, mysql start was successful with a message that ssl support could not be enabled. Stop the service.
To generate the certs,
Run
sudo mysql_ssl_rsa_setup --datadir /var/lib/mysql
The datadir may be different in your case.
Then do
sudo -i
cd /var/lib/mysql
chown mysql:mysql ./*
This will set the permissions for the generated cert and key files right.
Next you can start both apparmor and then mysql.
This fixed the issue in my case.
Since I did not try separately, I don't know whether it's the apparmor restart or generating the ssl key and certs that fixed the issue.
Note: I later found out this thread
For me, I ran some cache clearing operations to free up space using tools like Stacer, and then MySQL started showing problems.
Use this to get some clues first
grep mysql /var/log/syslog | grep ERROR
If the error says, Could not open file '/var/log/mysql/error.log' for error logging: No such file or directory
then clearly, the log files were cleaned up.
Use this to first create the MySQL directory and grant all permissions for MySQL to use that folder.
> sudo mkdir /var/log/mysql
> sudo chown -R mysql:mysql /var/log/mysql
> sudo service mysql restart
This solution has nothing to do with the my.cnf files and is completely safe on data.
Try running journalctl -u mysql.service to figure out why the error is happening.
Also, systemd cat mysql.service will show you the Service Unit file that describes your service - there might be errors.
This morning I noticed that my mysql server was not running. A look at the logs and I found the information below. While it is troubling that the mysqld service ran out of memory and was killed, it is more troubling that mysql could not restart.
Any ideas on why mysql could not respawn? How can I test to make sure that if the process is killed it will respawn?
Thank you.
387 Oct 10 06:37:09 ip-xxx-xxx-xxx-xxx kernel: [12218775.475042] Out of memory: Kill process 810 (mysqld) score 232 or sacrifice child
388 Oct 10 06:37:09 ip-xxx-xxx-xxx-xxx kernel: [12218775.475060] Killed process 810 (mysqld) total-vm:888108kB, anon-rss:139816kB, file-rss:0kB
389 Oct 10 06:37:09 ip-xxx-xxx-xxx-xxx kernel: [12218775.655663] init: mysql main process (810) killed by KILL signal
390 Oct 10 06:37:09 ip-xxx-xxx-xxx-xxx kernel: [12218775.655745] init: mysql main process ended, respawning
391 Oct 10 06:37:10 ip-xxx-xxx-xxx-xxx kernel: [12218776.044805] type=1400 audit(1381408630.181:13): apparmor="STATUS" operation="profile_replace" name="/usr/sbin/mysqld" pid=27754 comm="apparmor_parser"
392 Oct 10 06:37:10 ip-xxx-xxx-xxx-xxx kernel: [12218776.676434] init: mysql main process (27763) terminated with status 1
393 Oct 10 06:37:10 ip-xxx-xxx-xxx-xxx kernel: [12218776.676489] init: mysql main process ended, respawning
394 Oct 10 06:37:11 ip-xxx-xxx-xxx-xxx kernel: [12218777.468923] init: mysql post-start process (27764) terminated with status 1
395 Oct 10 06:37:11 ip-xxx-xxx-xxx-xxx kernel: [12218777.512363] type=1400 audit(1381408631.649:14): apparmor="STATUS" operation="profile_replace" name="/usr/sbin/mysqld" pid=27800 comm="apparmor_parser"
396 Oct 10 06:37:11 ip-xxx-xxx-xxx-xxx kernel: [12218777.681433] init: mysql main process (27804) terminated with status 1
397 Oct 10 06:37:11 ip-xxx-xxx-xxx-xxx kernel: [12218777.681491] init: mysql respawning too fast, stopped
I would try running mysqld directly as a command, and looking at the output. It could be e.g. InnoDB corruption leading to stopping immediately after spawning, at which point upstart might try to respawn until apparmour stops it.
http://ubuntuforums.org/showthread.php?t=1475798
looping script issue probably
An old question but a recurrent issue. The question has two faces:
first, why the mysql process runs out of memory?
secondly, why the mysql process can't start again?
The first one is something addressed to an overkill in the configuration. An oversized buffer configuration can make mysql ask for more memory than the system can provide. Verify this question to get insights of how to find best fit for your environment.
The second issue could be very trickful. There are lot of possibilities for problems that can prevent mysql to start. The following steps can be performed to figure out what is the cause.
The first clue can be found in the mysql log error file, in most of cases found in /var/log/mysql/error.log
However, regardless the nature of the issue, the error log file can be empty. In this case try to:
look into syslog: in a terminal prompt
type tail -f /var/log/syslog
and in another terminal try to start mysql:
service start mysql
If this approach don't provide any useful clue try the following:
Start mysqld from raw in verbose mode:
su mysql
mysqld -v
as showed here.
The output messages can be helpful to find out the root cause that prevents mysql to start.
I got those logs from syslog regarding mysql, however they are too brief in that they didn't tell me (or at least I think) what caused mysql to terminate with status 1. Can someone help me get more detailed logs?
Best,
Yuan
May 25 18:32:21 barnard kernel: [1587749.902491] type=1400 audit(1337985141.215:263): apparmor="STATUS" operation="profile_replace" name="/usr/sbin/mysqld" pid=22272 comm="apparmor_parser"
May 25 18:32:21 barnard kernel: [1587750.181772] init: mysql main process (22276) terminated with status 1
May 25 18:32:21 barnard kernel: [1587750.181819] init: mysql main process ended, respawning
May 25 18:32:22 barnard kernel: [1587750.939171] init: mysql post-start process (22277) terminated with status 1
May 25 18:32:22 barnard kernel: [1587750.951160] type=1400 audit(1337985142.263:264): apparmor="STATUS" operation="profile_replace" name="/usr/sbin/mysqld" pid=22310 comm="apparmor_parser"
May 25 18:32:22 barnard kernel: [1587751.226853] init: mysql main process (22314) terminated with status 1
May 25 18:32:22 barnard kernel: [1587751.226899] init: mysql main process ended, respawning
May 25 18:32:23 barnard kernel: [1587751.996106] init: mysql post-start process (22315) terminated with status 1
May 25 18:32:23 barnard kernel: [1587752.008270] type=1400 audit(1337985143.323:265): apparmor="STATUS" operation="profile_replace" name="/usr/sbin/mysqld" pid=22348 comm="apparmor_parser"
May 25 18:32:23 barnard kernel: [1587752.246873] init: mysql main process (22352) terminated with status 1
May 25 18:32:23 barnard kernel: [1587752.246919] init: mysql respawning too fast, stopped
Same problems here. There are some bugs in the Ubuntu installation/upgrade/configuration settings for mysql 5.5 from 5.1. Others claim success with the steps below, but none worked for me. This first step will remove apparmor (a security service), so only do this temporarily during debugging:
sudo service apparmor teardown
Add the following line to your /etc/mysql/my.cnf under a [server] section:
character_set_server = utf8
collation_server = utf8_general_ci
innodb_buffer_pool_size = 256M
But, like I said, this only worked for others, not me.
I'm running mysql off an SSD (/ mounted on SSD) with /var and /tmp symlinked to a HD, do you have a similarly hybrid drive configuration? Maybe this is causing the "respawing too fast" part of our problem.