I am solving AX=B using Cusparse for 1440 times (A is being modified, only diagonal elements, and B is also different). I am creating handle and analysis object just once.
I am using cusparseScrsilu0().
I want to perform this operation using streams. I have tried this using one handle and creating multiple streams but didn't get any speed-up.
Please, help me out of this problem.
You expect multi-stream design can make your CUDA kernels executing concurrently. However multi-stream does not always lead to Concurrent Kernel Execution. Kernels can be excuted concurrenly only when they fulfill certain pre-requests. One of the most important conditions is that each of your kernels occupies only a small portion of the hardware resources (SMs, texture, local mem, etc.). So if the size of your problem is large enough, then there will be no extra resources for another kernel to run concurrently.
Related
In my use case, the global GPU memory has many chunks of data. Preferably, the number of these could change, but assuming the number and sizes of these chunks of data to be constant is fine as well. Now, there are a set of functions that take as input some of the chunks of data and modify some of them. Some of these functions should only start processing if others completed already. In other words, these functions could be drawn in graph form with the functions being the nodes and edges being dependencies between them. The ordering of these tasks is quite weak though.
My question is now the following: What is (on a conceptual level) a good way to implement this in CUDA?
An idea that I had, which could serve as a starting point, is the following: A single kernel is launched. That single kernel creates a grid of blocks with the blocks corresponding to the functions mentioned above. Inter-block synchronization ensures that blocks only start processing data once their predecessors completed execution.
I looked up how this could be implemented, but I failed to figure out how inter-block synchronization can be done (if this is possible at all).
I would create for any solution an array in memory 500 node blocks * 10,000 floats (= 20 MB) with each 10,000 floats being stored as one continuous block. (The number of floats be better divisible by 32 => e.g. 10,016 floats for memory alignment reasons).
Solution 1: Runtime Compilation (sequential, but optimized)
Use Python code to generate a sequential order of functions according to the graph and create (printing out the source code into a string) a small program which calls the functions in turn. Each function should read the input from its predecessor blocks in memory and store the output in its own output block. Python should output the glue code (as string) which calls all functions in the correct order.
Use NVRTC (https://docs.nvidia.com/cuda/nvrtc/index.html, https://github.com/NVIDIA/pynvrtc) for runtime compilation and the compiler will optimize a lot.
A further optimization would be to not store the intermediate results in memory, but in local variables. They will be enough for all your specified cases (Maximum of 255 registers per thread). But of course makes the program (a small bit) more complicated. The variables can be freely named. And you can have 500 variables. The compiler will optimize the assignment to registers and reusing registers. So have one variable for each node output. E.g. float node352 = f_352(node45, node182, node416);
Solution 2: Controlled run on device (sequential)
The python program creates a list with the order, in which the functions have to be called. The individual functions know, from what memory blocks to read and in what block to write (either hard-coded, or you have to submit it to them in a memory structure).
On the device kernel a for loop is run, where the order list is went through sequentially and the kernel from the list is called.
How to specify, which functions to call?
The function pointers in the list can be created on the CPU like the following code: https://leimao.github.io/blog/Pass-Function-Pointers-to-Kernels-CUDA/ (not sure, if it works in Python).
Or regardless of host programming language a separate kernel can create a translation table: device function pointers (assign_kernel). Then the list from Python would contain indices into this table.
Solution 3: Dynamic Parallelism (parallel)
With Dynamic Parallelism kernels themselves start other kernels (grids).
https://developer.nvidia.com/blog/cuda-dynamic-parallelism-api-principles/
https://docs.nvidia.com/cuda/cuda-c-programming-guide/index.html#cuda-dynamic-parallelism
There is a maximum depth of 24.
The state of the parent grid could be swapped to memory (which could take a maximum of 860 MB per level, probably not for your program). But this could be a limitation.
All this swapping could make the parallel version slower again.
But the advantage would be that nodes can really be run in parallel.
Solution 4: Use Cuda Streams and Events (parallel)
Each kernel just calls one function. The synchronization and scheduling is done from Python. But the kernels run asynchronously and call a callback as soon as they are finished. Each kernel running in parallel has to be run on a separate stream.
Optimization: You can use the CUDA graph API, with which CUDA learns the order of the kernels and can do additional optimizations, when replaying (with possibly other float input data, but the same graph).
For all methods
You can try different launch configurations from 32 or better 64 threads per block up to 1024 threads per block.
Let's assume that most, or all, of your chunks of data are large; and that you have many distinct functions. If the former does not hold it's not clear you will even benefit from having them on a GPU in the first place. Let's also assume that the functions are black boxes to you, and you don't have the ability to identify fine-graines dependencies between individual values in your different buffers, with simple, local dependency functions.
Given these assumptions - your workload is basically the typical case of GPU work, which CUDA (and OpenCL) have catered for since their inception.
Traditional plain-vanilla approach
You define multiple streams (queues) of tasks; you schedule kernels on these streams for your various functions; and schedule event-fires and event-waits corresponding to your function's inter-dependency (or the buffer processing dependency). The event-waits before kernel launches ensure no buffer is processed until all preconditions have been satisfied. Then you have different CPU threads wait/synchronize with these streams, to get your work going.
Now, as far as the CUDA APIs go - this is bread-and-butter stuff. If you've read the CUDA Programming Guide, or at least the basic sections of it, you know how to do this. You could avail yourself of convenience libraries, like my API wrapper library, or if your workload fits, a higher-level offering such as NVIDIA Thrust might be more appropriate.
The multi-threaded synchronization is a bit less trivial, but this still isn't rocket-science. What is tricky and delicate is choosing how many streams to use and what work to schedule on what stream.
Using CUDA task graphs
With CUDA 10.x, NVIDIA add API functions for explicitly creating task graphs, with kernels and memory copies as nodes and edges for dependencies; and when you've completed the graph-construction API calls, you "schedule the task graph", so to speak, on any stream, and the CUDA runtime essentially takes care of what I've described above, automagically.
For an elaboration on how to do this, please read:
Getting Started with CUDA Graphs
on the NVIDIA developer blog. Or, for a deeper treatment - there's actually a section about them in the programming guide, and a small sample app using them, simpleCudaGraphs .
White-box functions
If you actually do know a lot about your functions, then perhaps you can create larger GPU kernels which perform some dependent processing, by keeping parts of intermediate results in registers or in block shared memory, and continuing to the part of a subsequent function applied to such local results. For example, if your first kernels does c[i] = a[i] + b[i] and your second kernel does e[i] = d[i] * e[i], you could instead write a kernel which performs the second action after the first, with inputs a,b,d (no need for c). Unfortunately I can't be less vague here, since your question was somewhat vague.
GPU is really fast when it comes to paralleled computation and out performs CPU with being 15-30 ( some have reported even 50 ) times faster however,
GPU memory is very limited compared to CPU memory and communication between GPU memory and CPU is not as fast.
Lets say we have some data what won't fit into GPU ram but we still want to use
it's wonders to compute. What we can do is split that data into pieces and feed it into GPU one by one.
Sending large data to GPU can take time and one might think, what if we would split a data piece into two and feed the first half, run the kernel and then feed the other half while kernel is running.
By that logic we should save some time because data transfer should be going on while computation is, hopefully not interrupting it's job and when finished, it can just, well, continue it's job without needs for waiting a new data path.
I must say that I'm new to gpgpu, new to cuda but I have been experimenting around with simple cuda codes and have noticed that the function cudaMemcpy used to transfer data between CPU and GPU will block if kerner is running. It will wait until kernel is finished and then will do its job.
My question, is it possible to accomplish something like that described above and if so, could one show an example or provide some information source of how it could be done?
Thank you!
is it possible to accomplish something like that described above
Yes, it's possible. What you're describing is a pipelined algorithm, and CUDA has various asynchronous capabilities to enable it.
The asynchronous concurrent execution section of the programming guide covers the necessary elements in CUDA to make it work. To use your example, there exists a non-blocking version of cudaMemcpy, called cudaMemcpyAsync. You'll need to understand CUDA streams and how to use them.
I would also suggest this presentation which covers most of what is needed.
Finally, here is a worked example. That particular example happens to use CUDA stream callbacks, but those are not necessary for basic pipelining. They enable additional host-oriented processing to be asynchronously triggered at various points in the pipeline, but the basic chunking of data, and delivery of data while processing is occurring does not depend on stream callbacks. Note also the linked CUDA sample codes in that answer, which may be useful for study/learning.
Assume I have Nvidia K40, and for some reason, I want my code only uses portion of the Cuda cores(i.e instead of using all 2880 only use 400 cores for examples), is it possible?is it logical to do this either?
In addition, is there any way to see how many cores are being using by GPU when I run my code? In other words, can we check during execution, how many cores are being used by the code, report likes "task manger" in Windows or top in Linux?
It is possible, but the concept in a way goes against fundamental best practices for cuda. Not to say it couldn't be useful for something. For example if you want to run multiple kernels on the same GPU and for some reason want to allocate some number of Streaming Multiprocessors to each kernel. Maybe this could be beneficial for L1 caching of a kernel that does not have perfect memory access patterns (I still think for 99% of cases manual shared memory methods would be better).
How you could do this, would be to access the ptx identifiers %nsmid and %smid and put a conditional on the original launching of the kernels. You would have to only have 1 block per Streaming Multiprocessor (SM) and then return each kernel based on which kernel you want on which SM's.
I would warn that this method should be reserved for very experienced cuda programmers, and only done as a last resort for performance. Also, as mentioned in my comment, I remember reading that a threadblock could migrate from one SM to another, so behavior would have to be measured before implementation and could be hardware and cuda version dependent. However, since you asked and since I do believe it is possible (though not recommended), here are some resources to accomplish what you mention.
PTS register for SM index and number of SMs...
http://docs.nvidia.com/cuda/parallel-thread-execution/#identifiers
and how to use it in a cuda kernel without writing ptx directly...
https://gist.github.com/allanmac/4751080
Not sure, whether it works with the K40, but for newer Ampere GPUs there is the MIG Multi-Instance-GPU feature to partition GPUs.
https://docs.nvidia.com/datacenter/tesla/mig-user-guide/
I don't know such methods, but would like to get to know.
As to question 2, I suppose sometimes this can be useful. When you have complicated execution graphs, many kernels, some of which can be executed in parallel, you want to load GPU fully, most effectively. But it seems on its own GPU can occupy all SMs with single blocks of one kernel. I.e. if you have a kernel with 30-blocks grid and 30 SMs, this kernel can occupy entire GPU. I believe I saw such effect. Really this kernel will be faster (maybe 1.5x against 4 256-threads blocks per SM), but this will not be effective when you have another work.
GPU can't know whether we are going to run another kernel after this one with 30 blocks or not - whether it will be more effective to spread it onto all SMs or not. So some manual way to say this should exist
As to question 3, I suppose GPU profiling tools should show this, Visual Profiler and newer Parallel Nsight and Nsight Compute. But I didn't try. This will not be Task manager, but a statistics for kernels that were executed by your program instead.
As to possibility to move thread blocks between SMs when necessary,
#ChristianSarofeen, I can't find mentions that this is possible. Quite the countrary,
Each CUDA block is executed by one streaming multiprocessor (SM) and
cannot be migrated to other SMs in GPU (except during preemption,
debugging, or CUDA dynamic parallelism).
https://developer.nvidia.com/blog/cuda-refresher-cuda-programming-model/
Although starting from some architecture there is such thing as preemption. As I remember NVidia advertised it in the following way. Let's say you made a game that run some heavy kernels (say for graphics rendering). And then something unusual happened. You need to execute some not so heavy kernel as fast as possible. With preemption you can unload somehow running kernels and execute this high priority one. This increases execution time (of this high pr. kernel) a lot.
I also found such thing:
CUDA Graphs present a new model for work submission in CUDA. A graph
is a series of operations, such as kernel launches, connected by
dependencies, which is defined separately from its execution. This
allows a graph to be defined once and then launched repeatedly.
Separating out the definition of a graph from its execution enables a
number of optimizations: first, CPU launch costs are reduced compared
to streams, because much of the setup is done in advance; second,
presenting the whole workflow to CUDA enables optimizations which
might not be possible with the piecewise work submission mechanism of
streams.
https://docs.nvidia.com/cuda/cuda-c-programming-guide/index.html#cuda-graphs
I do not believe kernels invocation take a lot of time (of course in case of a stream of kernels and if you don't await for results in between). If you call several kernels, it seems possible to send all necessary data for all kernels while the first kernel is executing on GPU. So I believe NVidia means that it runs several kernels in parallel and perform some smart load-balancing between SMs.
I'm implementing a Radon-like transform in CUDA, but I can't seem to get all performance out of my GeForce TITAN (EDIT: apparently I do, see comments). In order to optimize this, I thought of executing the kernels concurrently since they require only minimal data transfers, but I can't manage to get kernels to execute at the same time.
A typical profile run looks like this:
This is with "concurrent kernel support" enabled, compiling and generating code for sm_35 using CUDA 5.5 (RC). Overlap is minimal, and hardly worth it.
I've read a bit about concurrent kernel execution, and tried different things to get it right:
Launch the kernel in different streams
Interleave kernel launches, e.g. first launch kernel A n times using n streams, then launch kernel B n times using the same n streams, etc (although this might not be necessary any more for Kepler; the hardware managed to partially overlap kernels even when launched non-interleaved)
Make sure that kernels don't use the same global memory (although I don't know whether that matters)
Make sure that kernels don't use too much shared memory (the rotation kernels doesn't use any)
I don't get why the rotation kernels don't overlap more. Am I resource constrained, and if so, how can I find this out? If I use more diverse kernels it manages to parallelize a bit more, for example in this one,
but I think it should do better...
EDIT: removed the 20% figure since I cannot reproduce it, and it seems to be wrong as well
I want to compute the trajectories of particles subject to certain potentials, a typical N-body problem. I've been researching methods for utilizing a GPU (CUDA for example), and they seem to benefit simulations with large N (20000). This makes sense since the most expensive calculation is usually finding the force.
However, my system will have "low" N (less than 20), many different potentials/factors, and many time steps. Is it worth it to port this system to a GPU?
Based on the Fast N-Body Simulation with CUDA article, it seems that it is efficient to have different kernels for different calculations (such as acceleration and force). For systems with low N, it seems that the cost of copying to/from the device is actually significant, since for each time step one would have to copy and retrieve data from the device for EACH kernel.
Any thoughts would be greatly appreciated.
If you have less than 20 entities that need to be simulated in parallel, I would just use parallel processing on an ordinary multi-core CPU and not bother about using GPU.
Using a multi-core CPU would be much easier to program and avoid the steps of translating all your operations into GPU operations.
Also, as you already suggested, the performance gain using GPU will be small (or even negative) with this small number of processes.
There is no need to copy results from the device to host and back between time steps. Just run your entire simulation on the GPU and copy results back only after several time steps have been calculated.
For how many different potentials do you need to run simulations? Enough to just use the structure from the N-body example and still load the whole GPU?
If not, and assuming the potential calculation is expensive, I'd think it would be best to use one thread for each pair of particles in order to make the problem sufficiently parallel. If you use one block per potential setting, you can then write out the forces to shared memory, __syncthreads(), and use a subset of the block's threads (one per particle) to sum the forces. __syncthreads() again, and continue for the next time step.
If the potential calculation is not expensive, it might be worth exploring first where the main cost of your simulation is.