R, GeoJSON and Leaflet - json

Question

I recently learned about leafletjs.com from an R-Bloggers.com post. One such tutorial that I would like to achieve is to create interactive choropleth maps with leaflet (http://leafletjs.com/examples/choropleth.html). I have been using the rjson package for R to create the data.js file to be read by leaflet. Although I have had success with using the provided shape file as a readable JSON file in leaflet, I am unable to repeat the process when trying to merge additional properties from the data frame ("data.csv") to the JSON file; in this case, I have done rGIS to attach data on the number of cans in each school listed in the data frame. What I would please like to achieve is to create a choropleth map in leaflet that displayes high school district (as identified by the NAME variable), and the sum of "cans". The issue, I believe, is that writeOGR exports the information as points, rather than polygon?
{
"type": "Feature",
"properties": {
"name": "Alabama",
"density": 94.65
},
"geometry": ...
...
}
###load R scripts from dropbox
dropbox.eval <- function(x, noeval=F) {
require(RCurl)
intext <- getURL(paste0("https://dl.dropboxusercontent.com/",x), ssl.verifypeer = FALSE)
intext <- gsub("\r","", intext)
if (!noeval) eval(parse(text = intext), envir= .GlobalEnv)
return(intext)
}
##pull scripts from dropbox
dropbox.eval("s/wgb3vtd9qfc9br9/pkg.load.r")
dropbox.eval("s/tf4ni48hf6oh2ou/dropbox.r")
##load packages
pkg.load(c(ggplot2,plyr,gdata,sp,maptools,rgdal,reshape2,rjson))
###setup data frames
dl_from_dropbox("data.csv","dx3qrcexmi9kagx")
data<-read.csv(file='data.csv',header=TRUE)
###prepare GIS shape and data for plotting
dropbox.eval("s/y2jsx3dditjucxu/dlshape.r")
temp <- tempfile()
dlshape(shploc="http://files.hawaii.gov/dbedt/op/gis/data/highdist_n83.shp.zip", temp)
shape<- readOGR(".","highdist_n83") #HDOE high school districts
shape#proj4string
shape2<- spTransform(shape, CRS("+proj=longlat +datum=NAD83"))
data.2<-ddply(data, .(year, schoolcode, longitude, latitude,NAME,HDist,SDist), summarise,
total = sum(total),
cans= sum(cans))
###merging back shape properties and data frame
coordinates(data.2) <-~longitude + latitude
shape2#data$id <- rownames(shape2#data)
sh.df <- as.data.frame(shape2)
sh.fort <- fortify(shape2 , region = "id" )
sh.line<- join(sh.fort, sh.df , by = "id" )
mapdf <- merge( sh.line , data.2 , by.x= "NAME", by.y="NAME" , all=TRUE)
mapdf <- mapdf[ order( mapdf$order ) , ]
###exporting merged data frame as JSON
mapdf.sp <- mapdf
coordinates(mapdf.sp) <- c("long", "lat")
writeOGR(mapdf.sp, "hssra.geojson","mapdf", driver = "GeoJSON")
However, it appears that my features are repeating itself constantly. How can I aggregate the features information so that it looks more like the following:
var statesData = {"type":"FeatureCollection","features":[
{"type":"Feature","id":"01","properties":{"name":"Alabama","density":94.65},
"geometry":{"type":"Polygon","coordinates":[[[-87.359296,35.00118],
[-85.606675,34.984749],[-85.431413,34.124869],[-85.184951,32.859696],
[-85.069935,32.580372],[-84.960397,32.421541],[-85.004212,32.322956],
[-84.889196,32.262709],[-85.058981,32.13674],[-85.053504,32.01077],[-85.141136,31.840985],
[-85.042551,31.539753],[-85.113751,31.27686],[-85.004212,31.003013],[-85.497137,30.997536],
[-87.600282,30.997536],[-87.633143,30.86609],[-87.408589,30.674397],[-87.446927,30.510088],
[-87.37025,30.427934],[-87.518128,30.280057],[-87.655051,30.247195],[-87.90699,30.411504],
[-87.934375,30.657966],[-88.011052,30.685351],[-88.10416,30.499135],[-88.137022,30.318396],
[-88.394438,30.367688],[-88.471115,31.895754],[-88.241084,33.796253],
[-88.098683,34.891641],[-88.202745,34.995703],[-87.359296,35.00118]]]}},
{"type":"Feature","id":"02","properties":{"name":"Alaska","density":1.264},
"geometry":{"type":"MultiPolygon","coordinates":[[[[-131.602021,55.117982],
[-131.569159,55.28229],[-131.355558,55.183705],[-131.38842,55.01392],
[-131.645836,55.035827],[-131.602021,55.117982]]],[[[-131.832052,55.42469],
[-131.645836,55.304197],[-131.749898,55.128935],[-131.832052,55.189182],
[-131.832052,55.42469]]],[[[-132.976733,56.437924],[-132.735747,56.459832],
[-132.631685,56.421493],[-132.664547,56.273616],[-132.878148,56.240754],
[-133.069841,56.333862],[-132.976733,56.437924]]],[[[-133.595627,56.350293],

Answer 1

I ended up solving this question.
What I basically did was basically join the data.2 df to the shape file:
(shape2#data<-join(shape2#data,data.2)
and then using rgdal package to writeOGR in JSON format (using JSON driver) with the *.js extension.
I hope this helps others.