exception in running on windows7 64 bit - configuration

When i run sonar using StartSonar.bat i am getting exception like
as i read in http://obscuredclarity.blogspot.in/2012/05/install-sonar-on-windows-as-windows.html and i refered so many documentation regarding this but i did not find the solution for this. And the exception traced is,
jvm 1 | Wrapper (Version 3.2.3) http://wrapper.tanukisoftware.org
jvm 1 | Copyright 1999-2006 Tanuki Software, Inc. All Rights Reserved.
jvm 1 |
jvm 1 | 2013-05-06 13:10:25.267:INFO::Logging to org.sonar.application.Filter
edLogger#fee4648 via org.sonar.application.FilteredLogger
jvm 1 | 2013-05-06 13:10:25.301:INFO::jetty-6.1.25
jvm 1 | 2013-05-06 13:10:25.462:INFO::NO JSP Support for /, did not find org.
apache.jasper.servlet.JspServlet
jvm 1 | 2013-05-06 13:10:26.451:WARN::Failed startup of context org.mortbay.j
etty.webapp.WebAppContext#70c26b16{/,file:/C:/Program%20Files/sonar-3.5.1/war/so
nar-server}
jvm 1 | org.sonar.api.utils.SonarException: Unable to start database
jvm 1 | at org.sonar.server.database.EmbeddedDatabase.start(EmbeddedData
base.java:86)
jvm 1 | at org.sonar.server.database.EmbeddedDatabaseFactory.start(Embed
dedDatabaseFactory.java:41)
jvm 1 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
jvm 1 | at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
jvm 1 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Sourc
e)
jvm 1 | at java.lang.reflect.Method.invoke(Unknown Source)
jvm 1 | at org.picocontainer.lifecycle.ReflectionLifecycleStrategy.invok
eMethod(ReflectionLifecycleStrategy.java:110)
jvm 1 | at org.picocontainer.lifecycle.ReflectionLifecycleStrategy.start
(ReflectionLifecycleStrategy.java:89)
jvm 1 | at org.picocontainer.injectors.AbstractInjectionFactory$Lifecycl
eAdapter.start(AbstractInjectionFactory.java:84)
jvm 1 | at org.picocontainer.behaviors.AbstractBehavior.start(AbstractBe
havior.java:169)
jvm 1 | at org.picocontainer.behaviors.Stored$RealComponentLifecycle.sta
rt(Stored.java:132)
jvm 1 | at org.picocontainer.behaviors.Stored.start(Stored.java:110)
jvm 1 | at org.picocontainer.DefaultPicoContainer.potentiallyStartAdapte
r(DefaultPicoContainer.java:1009)
jvm 1 | at org.picocontainer.DefaultPicoContainer.startAdapters(DefaultP
icoContainer.java:1002)
jvm 1 | at org.picocontainer.DefaultPicoContainer.start(DefaultPicoConta
iner.java:760)
jvm 1 | at org.sonar.api.platform.ComponentContainer.startComponents(Com
ponentContainer.java:72)
jvm 1 | at org.sonar.server.platform.Platform.startDatabaseConnectors(Pl
atform.java:198)
jvm 1 | at org.sonar.server.platform.Platform.init(Platform.java:138)
jvm 1 | at org.sonar.server.platform.PlatformLifecycleListener.contextIn
itialized(PlatformLifecycleListener.java:33)
jvm 1 | at org.mortbay.jetty.handler.ContextHandler.startContext(Context
Handler.java:548)
jvm 1 | at org.mortbay.jetty.servlet.Context.startContext(Context.java:1
36)
jvm 1 | at org.mortbay.jetty.webapp.WebAppContext.startContext(WebAppCon
text.java:1272)
jvm 1 | at org.mortbay.jetty.handler.ContextHandler.doStart(ContextHandl
er.java:517)
jvm 1 | at org.mortbay.jetty.webapp.WebAppContext.doStart(WebAppContext.
java:489)
jvm 1 | at org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCyc
le.java:50)
jvm 1 | at org.mortbay.jetty.handler.HandlerWrapper.doStart(HandlerWrapp
er.java:130)
jvm 1 | at org.mortbay.jetty.Server.doStart(Server.java:224)
jvm 1 | at org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCyc
le.java:50)
jvm 1 | at org.sonar.application.JettyEmbedder.start(JettyEmbedder.java:
74)
jvm 1 | at org.sonar.application.StartServer.main(StartServer.java:49)
jvm 1 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
jvm 1 | at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
jvm 1 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Sourc
e)`
jvm 1 | at java.lang.reflect.Method.invoke(Unknown Source)
jvm 1 | at org.tanukisoftware.wrapper.WrapperSimpleApp.run(WrapperSimple
App.java:240)
jvm 1 | at java.lang.Thread.run(Unknown Source)
jvm 1 | 2013-05-06 13:10:26.473:INFO::Started SelectChannelConnector#0.0.0.0:
9000
may i know where i am going wrong

You have some configuration issue related to the database that you want to use for Sonar. Check your configuration in the "conf/sonar.properties" file to make sure that the DB connection properties are correctly set.

Related

SQL Error: 0, SQLState: 08S01 Communications link failure error with Hibernate without C3P0

We have two of these servers, were we are observing these errors. Both talk to the master RDS db.
The TPS value has recently risen and touching almost 50 TPS.
CPU usage on application servers are around 40%.
I am getting lots of these errors -
2019-09-02 00:00:12,714 65086940 [XNIO-3 task-18] INFO c.c.p.c.s.CustomRemoteTokenService [CustomRemoteTokenService.java:57] - API : service/api/path/profile/summary property api : system;;
2019-09-02 00:00:12,763 65086989 [XNIO-3 task-18] WARN o.h.e.jdbc.spi.SqlExceptionHelper [SqlExceptionHelper.java:127] - SQL Error: 0, SQLState: 08S01
2019-09-02 00:00:12,764 65086990 [XNIO-3 task-18] ERROR o.h.e.jdbc.spi.SqlExceptionHelper [SqlExceptionHelper.java:129] - Communications link failure
The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
2019-09-02 00:00:12,765 65086991 [XNIO-3 task-18] ERROR io.undertow.request [LoggingExceptionHandler.java:80] - UT005023: Exception handling request to /service/path/to/profile/summary
java.lang.NoClassDefFoundError: org/hibernate/internal/util/JdbcExceptionHelper
Almost, 3k in 5 mins, in one server, while the other server has 0 today. Interestingly, the errors are typically high on one of the application servers, while both are expected to handle similar load.
Db configuration values are -
show global variables like "%timeout%"
-> ;
+-----------------------------+----------+
| Variable_name | Value |
+-----------------------------+----------+
| connect_timeout | 10 |
| delayed_insert_timeout | 300 |
| have_statement_timeout | YES |
| innodb_flush_log_at_timeout | 1 |
| innodb_lock_wait_timeout | 50 |
| innodb_rollback_on_timeout | OFF |
| interactive_timeout | 28800 |
| lock_wait_timeout | 31536000 |
| net_read_timeout | 30 |
| net_write_timeout | 60 |
| rpl_stop_slave_timeout | 31536000 |
| slave_net_timeout | 60 |
| wait_timeout | 28800 |
+-----------------------------+----------+
I checked this question Database Connection to MySQL times out even after setting c3p0.testConnectionOnCheckout=true as well, however, since I don't have all the hibernate configs defined in my case, I am not sure if I need to tweak those.
I have only the following defined in my persistence.xml file -
<property name="hibernate.show_sql" value="true"/>
<property name="hibernate.format_sql" value="true"/>
<property name="hibernate.ejb.naming_strategy" value="org.hibernate.cfg.ImprovedNamingStrategy"/>
<property name="hibernate.connection.charSet" value="UTF-8"/>

Hikari CP SSL Exception closing inbound before receiving peer's close_notify

Since switching from Tomcat CP (spring boot 1 default) to Hikari (spring boot 2 default) we've started seeing many instances of:
EXCEPTION STACK TRACE:
** BEGIN NESTED EXCEPTION **
javax.net.ssl.SSLException
MESSAGE: closing inbound before receiving peer's close_notify
STACKTRACE:
javax.net.ssl.SSLException: closing inbound before receiving peer's close_notify
at java.base/sun.security.ssl.Alert.createSSLException(Alert.java:129)
at java.base/sun.security.ssl.Alert.createSSLException(Alert.java:117)
at java.base/sun.security.ssl.TransportContext.fatal(TransportContext.java:308)
at java.base/sun.security.ssl.TransportContext.fatal(TransportContext.java:264)
at java.base/sun.security.ssl.TransportContext.fatal(TransportContext.java:255)
at java.base/sun.security.ssl.SSLSocketImpl.shutdownInput(SSLSocketImpl.java:645)
at java.base/sun.security.ssl.SSLSocketImpl.shutdownInput(SSLSocketImpl.java:624)
at com.mysql.cj.protocol.a.NativeProtocol.quit(NativeProtocol.java:1312)
at com.mysql.cj.NativeSession.quit(NativeSession.java:182)
at com.mysql.cj.jdbc.ConnectionImpl.realClose(ConnectionImpl.java:1750)
at com.mysql.cj.jdbc.ConnectionImpl.close(ConnectionImpl.java:720)
at com.zaxxer.hikari.pool.PoolBase.quietlyCloseConnection(PoolBase.java:135)
at com.zaxxer.hikari.pool.HikariPool.lambda$closeConnection$1(HikariPool.java:441)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:834)
Environment
Spring Boot 2.1.1.RELEASE
Java 11
mysql-connector-java 8.0.13
HikariCP 3.2.0
Database:
RDS Aurora MySql 5.7.12 (default param group)
Configuration (Spring Boot)
Settings:
spring.datasource.hikari.transactionIsolation=TRANSACTION_REPEATABLE_READ
spring.datasource.hikari.minimumIdle=10
spring.datasource.hikari.idleTimeout=300000
spring.datasource.hikari.maximumPoolSize=20
spring.datasource.hikari.connectionTimeout=5000
spring.datasource.hikari.maxLifetime=900000
spring.datasource.hikari.validationTimeout=1000
Is there a setting which I'm missing, perhaps my idle times should be set much lower?
We have not (yet) experienced any obvious bad side effects of this, i.e. the application appears to continue running without issue, but this stacktrace appears frequently (perhaps every 4 seconds.
Database Settings
If I connect to mysql via the cli and run show variables; and grep for timeout related values, I see:
| connect_timeout | 10 |
| delayed_insert_timeout | 300 |
| have_statement_timeout | YES |
| innodb_flush_log_at_timeout | 1 |
| innodb_lock_wait_timeout | 50 |
| innodb_rollback_on_timeout | OFF |
| interactive_timeout | 28800 |
| lock_wait_timeout | 31536000 |
| net_read_timeout | 30 |
| net_write_timeout | 60 |
| rpl_stop_slave_timeout | 31536000 |
| slave_net_timeout | 60 |
| wait_timeout | 28800 |

Connecting Rundeck with MySql Database

I am trying to connect RunDeck with MySQL server but seeing below errors:-
org.hibernate.tool.schema.spi.CommandAcceptanceException: Error executing DDL via JDBC Statement
at org.hibernate.tool.schema.internal.exec.GenerationTargetToDatabase.accept(GenerationTargetToDatabase.java:67)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlString(AbstractSchemaMigrator.java:524)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlStrings(AbstractSchemaMigrator.java:470)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applyIndexes(AbstractSchemaMigrator.java:327)
at org.hibernate.tool.schema.internal.GroupedSchemaMigratorImpl.performTablesMigration(GroupedSchemaMigratorImpl.java:84)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.performMigration(AbstractSchemaMigrator.java:203)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.doMigration(AbstractSchemaMigrator.java:110)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.performDatabaseAction(SchemaManagementToolCoordinator.java:176)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.process(SchemaManagementToolCoordinator.java:65)
at org.hibernate.internal.SessionFactoryImpl.<init>(SessionFactoryImpl.java:478)
at org.hibernate.boot.internal.SessionFactoryBuilderImpl.build(SessionFactoryBuilderImpl.java:422)
at org.hibernate.cfg.Configuration.buildSessionFactory(Configuration.java:711)
at org.grails.orm.hibernate.cfg.HibernateMappingContextConfiguration.buildSessionFactory(HibernateMappingContextConfiguration.java:276)
at org.grails.orm.hibernate.connections.HibernateConnectionSourceFactory.create(HibernateConnectionSourceFactory.java:86)
at org.grails.orm.hibernate.connections.AbstractHibernateConnectionSourceFactory.create(AbstractHibernateConnectionSourceFactory.java:39)
at org.grails.orm.hibernate.connections.AbstractHibernateConnectionSourceFactory.create(AbstractHibernateConnectionSourceFactory.java:23)
at org.grails.datastore.mapping.core.connections.AbstractConnectionSourceFactory.create(AbstractConnectionSourceFactory.java:64)
at org.grails.datastore.mapping.core.connections.AbstractConnectionSourceFactory.create(AbstractConnectionSourceFactory.java:52)
at org.grails.datastore.mapping.core.connections.ConnectionSourcesInitializer.create(ConnectionSourcesInitializer.groovy:24)
at org.grails.orm.hibernate.HibernateDatastore.<init>(HibernateDatastore.java:201)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:142)
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:122)
at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:271)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1201)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1103)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:513)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108)
at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:648)
at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:145)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1201)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1103)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.getSingletonFactoryBeanForTypeCheck(AbstractAutowireCapableBeanFactory.java:931)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.getTypeForFactoryBean(AbstractAutowireCapableBeanFactory.java:808)
at org.springframework.beans.factory.support.AbstractBeanFactory.isTypeMatch(AbstractBeanFactory.java:564)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.doGetBeanNamesForType(DefaultListableBeanFactory.java:432)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.getBeanNamesForType(DefaultListableBeanFactory.java:395)
at org.springframework.beans.factory.BeanFactoryUtils.beanNamesForTypeIncludingAncestors(BeanFactoryUtils.java:206)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.findAutowireCandidates(DefaultListableBeanFactory.java:1267)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1101)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:1066)
at org.springframework.beans.factory.support.ConstructorResolver.resolveAutowiredArgument(ConstructorResolver.java:835)
at org.springframework.beans.factory.support.ConstructorResolver.createArgumentArray(ConstructorResolver.java:741)
at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:467)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:1181)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1075)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:513)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202)
at org.springframework.context.support.PostProcessorRegistrationDelegate.registerBeanPostProcessors(PostProcessorRegistrationDelegate.java:225)
at org.springframework.context.support.AbstractApplicationContext.registerBeanPostProcessors(AbstractApplicationContext.java:703)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:528)
at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.refresh(EmbeddedWebApplicationContext.java:122)
at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:693)
at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:360)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:303)
at grails.boot.GrailsApp.run(GrailsApp.groovy:84)
at grails.boot.GrailsApp.run(GrailsApp.groovy:393)
at grails.boot.GrailsApp.run(GrailsApp.groovy:380)
at grails.boot.GrailsApp$run.call(Unknown Source)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:116)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:136)
at rundeckapp.Application.main(Application.groovy:27)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.boot.loader.MainMethodRunner.run(MainMethodRunner.java:48)
at org.springframework.boot.loader.Launcher.launch(Launcher.java:87)
at org.springframework.boot.loader.Launcher.launch(Launcher.java:50)
at org.springframework.boot.loader.WarLauncher.main(WarLauncher.java:59)
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: INDEX command denied to user 'rundeck'#'10.0.0.8' for table 'base_report'
Here is my rundeck-config.properties file
#loglevel.default is the default log level for jobs: ERROR,WARN,INFO,VERBOSE,DEBUG
loglevel.default=INFO
rdeck.base=/var/lib/rundeck
#rss.enabled if set to true enables RSS feeds that are public (non-authenticated)
rss.enabled=false
# change hostname here
grails.serverURL=http://10.0.0.8:4440
dataSource.dbCreate = update
dataSource.url = jdbc:mysql://my-dev.************.us-east-1.rds.amazonaws.com:3306/rundeck?autoReconnect=true&useSSL=false
dataSource.username = rundeck
dataSource.password = ***************
dataSource.driverClassName=com.mysql.jdbc.Driver
rundeck.log4j.config.file = /etc/rundeck/log4j.properties
I have copied JDBC driver as well to /var/lib/rundeck/libext
[rundeck#mysever]$ pwd && ls -ld mysql-connector-java-5.1.46
/var/lib/rundeck/libext
drwxr-xr-x 3 rundeck rundeck 4096 Feb 26 13:28 mysql-connector-java-5.1.46
I have followed instructions here:
http://rundeck.org/2.10.6/administration/setting-up-an-rdb-datasource.html#setup-mysql
Even though I can see table structure in my RDS but there is no entry in any of the table
mysql> show tables;
+----------------------------+
| Tables_in_rundeck |
+----------------------------+
| auth_token |
| base_report |
| execution |
| job_file_record |
| log_file_storage_request |
| node_filter |
| notification |
| orchestrator |
| plugin_meta |
| project |
| rdoption |
| rdoption_values |
| rduser |
| referenced_execution |
| report_filter |
| scheduled_execution |
| scheduled_execution_filter |
| storage |
| workflow |
| workflow_step |
| workflow_workflow_step |
+----------------------------+
INDEX command denied to user 'rundeck'#'10.0.0.8' for table 'base_report'
You have a permissions issue that is causing the Schema Migration to fail. You should have run:
GRANT ALL ON rundeck.* to rundeck;
You can check the current permissions with:
SHOW GRANTS FOR rundeck;

Octave: Installing package not successful

Trying to install the package communications-1.2.1.tar.gz on my windows-64-system leads to the following error message. What do I have to do to get it running?
genqamdemod.cc: In function 'octave_value_list Fgenqamdemod(const octave_value_list&, int)':
genqamdemod.cc:39:23: warning: 'int empty_arg(const char*, octave_idx_type, octave_idx_type)' is deprecated (declared at C:\Program
s\Octave\include\octave-4.2.1\octave\../octave/utils.h:58): use 'octave_value::is_empty' instead [-Wdeprecated-declarations]
int arg_is_empty1 = empty_arg ("genqamdemod", nr1, nc1);
^
genqamdemod.cc:39:57: warning: 'int empty_arg(const char*, octave_idx_type, octave_idx_type)' is deprecated (declared at C:\Program
s\Octave\include\octave-4.2.1\octave\../octave/utils.h:58): use 'octave_value::is_empty' instead [-Wdeprecated-declarations]
int arg_is_empty1 = empty_arg ("genqamdemod", nr1, nc1);
^
In file included from galois.h:24:0,
from galois-def.cc:21:
C:\Programs\Octave\include\octave-4.2.1\octave\../octave/config.h:28:2: warning: #warning "config.h has been deprecated; there is n
o need to include it directly" [-Wcpp]
#warning "config.h has been deprecated; there is no need to include it directly"
^
In file included from galois-def.cc:21:0:
galois.h:25:28: fatal error: octave/base-lu.h: No such file or directory
#include <octave/base-lu.h>
^
compilation terminated.
make: *** [galois-def.o] Error 1
make: Entering directory `/tmp/oct-2OnYWD/communications-1.2.1/src'
C:/Programs/Octave/bin/mkoctfile-4.2.1.exe -DGALOIS_DISP_PRIVATES __errcore__.cc -o __errcore__.oct
C:/Programs/Octave/bin/mkoctfile-4.2.1.exe -DGALOIS_DISP_PRIVATES __gfweight__.cc -o __gfweight__.oct
C:/Programs/Octave/bin/mkoctfile-4.2.1.exe -DGALOIS_DISP_PRIVATES cyclgen.cc -o cyclgen.oct
C:/Programs/Octave/bin/mkoctfile-4.2.1.exe -DGALOIS_DISP_PRIVATES cyclpoly.cc -o cyclpoly.oct
C:/Programs/Octave/bin/mkoctfile-4.2.1.exe -DGALOIS_DISP_PRIVATES genqamdemod.cc -o genqamdemod.oct
C:/Programs/Octave/bin/mkoctfile-4.2.1.exe -DGALOIS_DISP_PRIVATES -c galois-def.cc -o galois-def.o
make: Leaving directory `/tmp/oct-2OnYWD/communications-1.2.1/src'
pkg: error running `make' for the communications package.
error: called from
configure_make at line 95 column 9
install at line 192 column 7
pkg at line 394 column 9
The following table shows the result of pkg list.
Package Name | Version | Installation directory
---------------------+---------+-----------------------
control | 3.0.0 | C:\Programs\Octave\share\octave\packages\control-3.0.0
data-smoothing | 1.3.0 | C:\Programs\Octave\share\octave\packages\data-smoothing-1.3.0
database | 2.4.2 | C:\Programs\Octave\share\octave\packages\database-2.4.2
dataframe | 1.1.0 | C:\Programs\Octave\share\octave\packages\dataframe-1.1.0
dicom | 0.1.1 | C:\Programs\Octave\share\octave\packages\dicom-0.1.1
financial | 0.5.0 | C:\Programs\Octave\share\octave\packages\financial-0.5.0
fits | 1.0.7 | C:\Programs\Octave\share\octave\packages\fits-1.0.7
fuzzy-logic-toolkit | 0.4.5 | C:\Programs\Octave\share\octave\packages\fuzzy-logic-toolkit-0.4.5
ga | 0.10.0 | C:\Programs\Octave\share\octave\packages\ga-0.10.0
general | 2.0.0 | C:\Programs\Octave\share\octave\packages\general-2.0.0
generate_html | 0.1.13 | C:\Programs\Octave\share\octave\packages\generate_html-0.1.13
geometry | 2.1.1 | C:\Programs\Octave\share\octave\packages\geometry-2.1.1
gsl | 2.0.0 | C:\Programs\Octave\share\octave\packages\gsl-2.0.0
image | 2.6.1 | C:\Programs\Octave\share\octave\packages\image-2.6.1
instrument-control | 0.2.3 | C:\Programs\Octave\share\octave\packages\instrument-control-0.2.3
interval | 2.1.0 | C:\Programs\Octave\share\octave\packages\interval-2.1.0
io | 2.4.5 | C:\Programs\Octave\share\octave\packages\io-2.4.5
linear-algebra | 2.2.2 | C:\Programs\Octave\share\octave\packages\linear-algebra-2.2.2
lssa | 0.1.2 | C:\Programs\Octave\share\octave\packages\lssa-0.1.2
ltfat | 2.2.0 | C:\Programs\Octave\share\octave\packages\ltfat-2.2.0
mapping | 1.2.1 | C:\Programs\Octave\share\octave\packages\mapping-1.2.1
miscellaneous | 1.2.1 | C:\Programs\Octave\share\octave\packages\miscellaneous-1.2.1
nan | 3.1.2 | C:\Programs\Octave\share\octave\packages\nan-3.1.2
netcdf | 1.0.11 | C:\Programs\Octave\share\octave\packages\netcdf-1.0.11
nurbs | 1.3.10 | C:\Programs\Octave\share\octave\packages\nurbs-1.3.10
ocs | 0.1.5 | C:\Programs\Octave\share\octave\packages\ocs-0.1.5
odepkg | 0.8.5 | C:\Programs\Octave\share\octave\packages\odepkg-0.8.5
optim | 1.5.2 | C:\Programs\Octave\share\octave\packages\optim-1.5.2
quaternion | 2.4.0 | C:\Programs\Octave\share\octave\packages\quaternion-2.4.0
queueing | 1.2.5 | C:\Programs\Octave\share\octave\packages\queueing-1.2.5
signal | 1.3.2 | C:\Programs\Octave\share\octave\packages\signal-1.3.2
sockets | 1.2.0 | C:\Programs\Octave\share\octave\packages\sockets-1.2.0
sparsersb | 1.0.2 | C:\Programs\Octave\share\octave\packages\sparsersb-1.0.2
specfun | 1.1.0 | C:\Programs\Octave\share\octave\packages\specfun-1.1.0
splines | 1.3.2 | C:\Programs\Octave\share\octave\packages\splines-1.3.2
statistics | 1.3.0 | C:\Programs\Octave\share\octave\packages\statistics-1.3.0
stk | 2.3.4 | C:\Programs\Octave\share\octave\packages\stk-2.3.4
strings | 1.2.0 | C:\Programs\Octave\share\octave\packages\strings-1.2.0
struct | 1.0.14 | C:\Programs\Octave\share\octave\packages\struct-1.0.14
tisean | 0.2.3 | C:\Programs\Octave\share\octave\packages\tisean-0.2.3
tsa | 4.4.5 | C:\Programs\Octave\share\octave\packages\tsa-4.4.5
video | 1.2.3 | C:\Programs\Octave\share\octave\packages\video-1.2.3
windows | 1.2.4 | C:\Programs\Octave\share\octave\packages\windows-1.2.4
zeromq | 1.2.1 | C:\Programs\Octave\share\octave\packages\zeromq-1.2.1
I believe just a re-installation will do --> https://www.gnu.org/software/octave/#install
following the instructions exactly.

java.sql.SQLException: Connection is not associated with a managed connection.org.jboss.resource.adapter.jdbc.jdk5.WrappedConnectionJDK5#42d0cb88

I'm using jboss5.1 with spring as the system's architecture. The version of mysql is 5.6.12, and the version of jdk is 1.7.
Scenario : Because I need update the record which the system inserted into the DB no long before,
I try to get the id of the record while executing inserting record.
I used GeneratedKeyHolder(class in spring) to get the auto id . The source is as below :
KeyHolder keyHolder = new GeneratedKeyHolder();
jdbcTemplate.update(new PreparedStatementCreator()
{
public PreparedStatement createPreparedStatement(Connection con) throws SQLException
{
PreparedStatement ps = con.prepareStatement(sql, new String[] { "id" });
ps.setString(1, record.getCmdName());
ps.setTimestamp(6, new Timestamp(System.currentTimeMillis()));
return ps;
}
}, keyHolder);
return keyHolder.getKey().intValue();
In the most environments, the code work well , but in one environment it throws exception as below. It's so surprising , and we failed to reproduce the exception in our testing environment.
INFO | jvm 1 | 2013/09/24 11:03:47 | org.springframework.jdbc.UncategorizedSQLException: PreparedStatementCallback; uncategorized SQLException for SQL []; SQL state [null]; error code [0]; Connection is not associated with a managed connection.org.jboss.resource.adapter.jdbc.jdk5.WrappedConnectionJDK5#42d0cb88; nested exception is java.sql.SQLException: Connection is not associated with a managed connection.org.jboss.resource.adapter.jdbc.jdk5.WrappedConnectionJDK5#42d0cb88
INFO | jvm 1 | 2013/09/24 11:03:47 | Caused by:
INFO | jvm 1 | 2013/09/24 11:03:47 | java.sql.SQLException: Connection is not associated with a managed connection.org.jboss.resource.adapter.jdbc.jdk5.WrappedConnectionJDK5#42d0cb88
INFO | jvm 1 | 2013/09/24 11:03:47 | at org.jboss.resource.adapter.jdbc.WrappedConnection.lock(WrappedConnection.java:81)
INFO | jvm 1 | 2013/09/24 11:03:47 | at org.jboss.resource.adapter.jdbc.WrappedConnection.prepareStatement(WrappedConnection.java:345)
INFO | jvm 1 | 2013/09/24 11:03:47 | at RecordDao$1.createPreparedStatement(RecordDao.java:60)
INFO | jvm 1 | 2013/09/24 11:03:47 | at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:532)
INFO | jvm 1 | 2013/09/24 11:03:47 | at org.springframework.jdbc.core.JdbcTemplate.update(JdbcTemplate.java:771)
INFO | jvm 1 | 2013/09/24 11:03:47 | at RecordDao.insertGongdan(RecordDao.java:56)
INFO | jvm 1 | 2013/09/24 11:03:47 |
INFO | jvm 1 | 2013/09/24 11:03:47 | at java.lang.Thread.run(Thread.java:722)
INFO | jvm 1 | 2013/09/24 11:03:47 | 11:03:47,543 INFO [TL1ServerSession] TL1ServerSession send!
INFO | jvm 1 | 2013/09/24 11:03:47 | 11:03:47,543 INFO [TL1ServerSession] Send TL1 Message:
INFO | jvm 1 | 2013/09/24 11:03:47 |
You get following error message:
Connection is not associated with a managed connection.org.jboss.resource.adapter.jdbc.jdk5.WrappedConnectionJDK5
and you used jdk 1.7. But it not occured this problem.
I start looking in net this problem and find this topic. WhatDoesTheMessageDoYourOwnHousekeepingMean explain the closing a connection what is mean for you.
I think you need to adjust the transaction timeout.#Ellie Fabrero say: Some of the query may take long so the timeout is reach and hibernate throws an exception.
It seems that you "conn" object was not initialized so there is not a valid connection to execute the statement.
I was just getting this error and it looks like it has to do with executing a query when you don't have a valid connection object. In my case, I was looping through a list and calling an insert on each element of the list, but my method was written in a way that cleaned up the connection before the second element was called, thus the error.
I'd imagine the other case is as mentioned above, where the connection object isn't initialized at all.
I had the same problem with this weird message called 'Uncategorized Sql Exception'.
In my case there were some corrupted data in the table that I was doing the select query. It was the reason we can't reproduce in other environment, including mirrored databases.
After cleaning the database table, this issue was solved.