i have one query which is causing problem and according to google it is because of insufficient temp memory.
the same query was working just fine few days back and my website got hacked and after restoring from backup i am getting this type of error however database was as usual old one.
"Incorrect key file for table /tmp/#sql_xxx_x.MYI" error
1030 Got error 28 from storage engine
both cases i searched and found that it is because of temp memory but how suddenly temp become prblem the same query was working just fine few days back and i checked that query using mysql explain and its output was good as it says only 144 rows are examined to give the output of 20 rows.
then i used this command to see how much really i am having memory in temp
and it says
ddfdd#drddrr[~]# df -h
Filesystem Size Used Avail Use% Mounted on
/dev/mapper/VolGroup-lv_root
3.6T 49G 3.4T 2% /
tmpfs 7.8G 0 7.8G 0% /dev/shm
/dev/sda1 243M 86M 145M 38% /boot
/usr/tmpDSK 4.0G 3.8G 0 100% /tmp
so where is the problem and how i can resolve it?
any advice will be highly appreciated.
Double check that /tmp does not have other files using all of the space and preventing MySQL from creating an on disk tmp table.
Alternatively you can create a new tmp directory off your root slice as it has plenty of space and then change your tmpdir variable in the my.cnf to point to it. Though this is not a dynamic variable and will require a restart. Make sure to chown the directory so MySQL can write to it.
Related
I am having an issue with a storage . I recieved this error
Got error 28 from storage engine
I have checked the storage capacity and it was still available and it was not full. what can be the reason for this? I have checked everything with no success
It is possible that I am running out of main mysql data directory, or in the mysql tmp. Can someone tell me how to find their place in order to check for it too ?
It is possible that I am running out of main mysql data directory, or in the mysql tmp. Can someone tell me how to find their place in order to check for it too ?
TL;DR
Issue the following commands to inspect the location of your server's data and temporary directories respectively:
SHOW GLOBAL VARIABLES LIKE 'datadir'
SHOW GLOBAL VARIABLES LIKE 'tmpdir'
The values of these variables are typically absolute paths (relative to any chroot jail in which the server is running), but if they happen to be relative paths then they will be relative to the working directory of the process that started the server.
However...
As documented under The MySQL Data Directory (emphasis added):
The following list briefly describes the items typically found in the data directory ...
Some items in the preceding list can be relocated elsewhere by reconfiguring the server. In addition, the --datadir option enables the location of the data directory itself to be changed. For a given MySQL installation, check the server configuration to determine whether items have been moved.
You may therefore also wish to inspect the values of a number of other variables, including:
pid_file
ssl_%
%_log_file
innodb_data_home_dir
innodb_log_group_home_dir
innodb_temp_data_file_path
innodb_undo_directory
innodb_buffer_pool_filename
If your server is not responsive...
You can also inspect the server's startup configuration.
As documented under Specifying Program Options, the server's startup configuration is determined "by examining environment variables, then by processing option files, and then by checking the command line" with later options taking precedence over earlier options.
The documentation also lists the locations of the Option Files Read on Unix and Unix-Like Systems, should you require it. Note that the sections of those files that the server reads is determined by the manner in which the server is started, as described in the second and third paragraphs of Server Command Options.
Once you have found the locations where MySQL stores files, run a command in the shell:
df -Ph <pathname>
Where <pathname> is each of the locations you want to test. Some may be on the same disk volume, so they'll show up as the same when reported by df.
[vagrant#localhost ~]$ mysql -e 'select ##datadir'
+-----------------+
| ##datadir |
+-----------------+
| /var/lib/mysql/ |
+-----------------+
[vagrant#localhost ~]$ df -Ph /var/lib/mysql
Filesystem Size Used Avail Use% Mounted on
/dev/mapper/VolGroup00-LogVol00 38G 3.7G 34G 10% /
This tells me that the disk volume for my datadir is the root volume, including the top-level directory "/" and everything beneath that. The volume is 10% full, with 34G unused.
If the volume where your datadir reaches 100%, then you'll start seeing errno 28 issues when you insert new data and it needs to expand a MySQL tablespace, or write to a log file.
In that case, you need to figure out what's taking so much space. It might be something under the MySQL directory, or like in my case, your datadir might be part of a larger disk volume, where all your other files exist. In that case, any accumulation of files on the system might cause the disk to fill up. For example, log files or temp files even if they're not related to MySQL.
I'd start at the top of the disk volume and use du to figure out which directories are so full.
[vagrant#localhost ~]$ sudo du -shx /*
33M /boot
34M /etc
40K /home
28M /opt
4.0K /tmp
2.0G /usr
941M /vagrant
666M /var
Note: if your df command told you that your datadir is on a separate disk volume, you'd start at that volume's mount point. The space used by one disk volume does not count toward another disk volume.
Now I see that /usr is taking the most space, of top-level directories. Drill down and see what's taking space under that:
[vagrant#localhost ~]$ sudo du -shx /usr/*
166M /usr/bin
126M /usr/include
345M /usr/lib
268M /usr/lib64
55M /usr/libexec
546M /usr/local
106M /usr/sbin
335M /usr/share
56M /usr/src
Keep drilling down level by level.
Usually the culprit ends up being pretty clear. Like if you have some huge 500G log file /var/log somewhere that has been growing for months.
An example of a typical culprit is the http server logs.
Re your comments:
It sounds like you have a separate storage volume for your database storage. That's good.
You just added the du output to your question above. I see that in your 1.4T disk volume, the largest single file by far is this:
1020G /vol/db1/mysql/_fool_Gerg_sql_200e_4979_main_16419_2_18.tokudb$
This appears to be a TokuDB tablespace. There's information on how TokuDB handles full disks here: https://www.percona.com/doc/percona-server/LATEST/tokudb/tokudb_faq.html#full-disks
I would not remove those files. I'm not as familiar with TokuDB as I am with InnoDB, but I assume those files are important datafiles. If you remove them, you will lose part of your data and you might corrupt the rest of your data.
I found this post, which explains in detail what the files are used for: https://www.percona.com/blog/2014/07/30/examining-the-tokudb-mysql-storage-engine-file-structure/
The manual also says:
Deleting large numbers of rows from an existing table and then closing the table may free some space, but it may not. Deleting rows may simply leave unused space (available for new inserts) inside TokuDB data files rather than shrink the files (internal fragmentation).
So you can DELETE rows from the table, but the physical file on disk may not shrink. Eventually, you could free enough space that you can build a new TokuDB data file with ALTER TABLE <tablename> ENGINE=TokuDB ROW_FORMAT=TOKUDB_SMALL; (see https://dba.stackexchange.com/questions/48190/tokudb-optimize-table-does-not-reclaim-disk-space)
But this will require enough free disk space to build the new table.
So I'm afraid you have painted yourself into a corner. You no longer have enough disk space to rebuild your large table. You should never let the free disk space get smaller than the space required to rebuild your largest table.
At this point, you probably have to use mysqldump to dump data from your largest table. Not necessarily the whole table, but just what you want to keep (read about the mysqldump --where option). Then DROP TABLE to remove that large table entirely. I assume that will free disk space, where using DELETE won't.
You don't have enough space on your db1 volume to save the dump file, so you'll have to save it to another volume. It looks like you have a larger volume on /vol/cbgb1, but I don't know if it's full.
I'd dump the whole thing, for archiving purposes. Then dump again with a subset.
mkdir /vol/cbgdb1/backup
mysqldump fool Gerg | gzip -c > /vol/cbgdb1/backup/Gerg-dump-full.sql.gz
mysqldump fool Gerg --where "id > 8675309" | gzip -c > /vol/cbgb1/backup/Gerg-dump-partial.sql.gz
I'm totally guessing at the arguments to --where. You'll have to decide how you want to select for a partial dump.
After the big table is dropped, reload the partial data you dumped:
gunzip -c /vol/cbgb1/backup/Gerg-dump-partial.sql.gz | mysql fool
If there are any commands I've given in my examples that you don't already know well, I suggest you learn them before trying them. Or find someone to pair with who is more familiar with those commands.
i will really appreciate if someone help me with this.
I have spend like 8hours googling around and found no solution to problem.
I have MySQL server version 5.7.7 on Windows server 2008 R2
Table engine is innodb
innodb_file_per_table = 1
I get error "Table is full" when table reaches 4Gb.
MySQL documentation sais that there is actualy only one limit on table size, filesystem.
(http://dev.mysql.com/doc/refman/5.7/en/table-size-limit.html)
HDD where are data stored uses NTFS, just to be sure i created 5Gb file without problems. And sure there is more than 10Gb of free space.
I understand setting "innodb_data_file_path" is irrelevant if "innodb_file_per_table" is enabled, but i tried to set it. No differences.
I have tried to do clean install of mysql. Same result.
EDIT
Guy that installed MySQL server before me accidentally installed 32bit version. Migration to 64bit mysql solved that problem
About the only way for 4GB to be a file limit is if you have a 32-bit version of MySQL. Also check for 32-bit Operating system. (Moved from comment, where it was verified.)
i am also not sure but read this it may help you.
http://jeremy.zawodny.com/blog/archives/000796.html
one more thing one guy had same problem.he had made changes to
NNODB settings for the innodb_log_file_size and innodb_log_buffer_size!changes were :
1) shutdown mysql
2) cd /var/lib/mysql
3) mkdir oldIblog
4) mv ib_logfile* oldIblog
5) edit /etc/my.cnf find the line innodb_log_file_size= and increase it to an appropriate value (he went to 1000MB as he was dealing with a very large dataset... 250million rows in one table). If you are not sure I suggest doubling the number every time you get a table is full error. he set innodb_log_buffer_size to 1/4 of the size of his log file and the problems went away.
I didnt find solution to this, i have no idea why mysql is unable to create more than 4Gb table.
As a workaround i moved only this table back to ibdata by setting "innodb_file_per_table" back to 0 and recreated that table.
Interesting is that even ibdata1 reported table is full when it reached 4Gb, even without setting max and enabled autoexpand.
So i created ibdata2 and let it autoexpand, now i am able to write new data to that table.
I have a question about getting a huge table to local machine from mysql running in AWS.
I just created a table which has a size of 2.3GB, however I have only 2 GB free disk space.
This lead into a situation that I even can not dump my table into a dump file which would cause error 28. Then I have two choices.
Clean up the disk with 300+MB free space.
I have already tried to delete everything I could.
I have only 2.5G database but mysqldb1 takes up to 4GB size which I have no idea.
ubuntu#ip-10-60-125-122:~$ df -h
Filesystem Size Used Avail Use% Mounted on
/dev/xvda1 8.0G 5.6G 2.0G 74% /
udev 819M 12K 819M 1% /dev
tmpfs 331M 184K 331M 1% /run
none 5.0M 0 5.0M 0% /run/lock
none 827M 0 827M 0% /run/shm
/dev/xvdb 147G 188M 140G 1% /mnt
Split my table into two different tables or more which I could dump then seperately and then put them together later.
I am new to mysql and hope a safe and easy solutions could be provided.
Best regards and let me know if I could do anything to improve my question.
If you're sure that you actually don't have that much data stored in the database, you might want to take a look at this other question here on SO:
MySQL InnoDB not releasing disk space after deleting data rows from table
By default, MySQL doesn't reduce the file sizes if you delete data. If your MySQL is configured for per-table files, you should be able to reduce the data by optimizing the database. Otherwise, you'll have to get all the data to another machine and recreate the database with per-table files configured.
I am working on a project where i need to create a database with 300 tables for each user who wants to see the demo application. it was working fine but today when i was testing with a new user to see a demo it showed me this error message
1030 Got error 28 from storage engine
After spending some time googling i found it is an error that is related to space of database or temporary files. I tried to fix it but i failed. now i am not even able to start mysql. How can i fix this and i would also like to increase the size to maximum so that i won't face the same issue again and again.
Mysql error "28 from storage engine" - means "not enough disk space".
To show disc space use command below.
myServer# df -h
Results must be like this.
Filesystem Size Used Avail Capacity Mounted on
/dev/vdisk 13G 13G 46M 100% /
devfs 1.0k 1.0k 0B 100% /dev
To expand on this (even though it is an older question); It is not not about the MySQL space itself probably, but about space in general, assuming for tmp files or something like that.
My mysql data dir was not full, the / (root) partition was
I had the same issue in AWS RDS. It was due to the Freeable Space (Hard Drive Storage Space) was Full. You need to increase your space, or remove some data.
My /tmp was %100. After removing all files and restarting mysql everything worked fine.
My /var/log/apache2 folder was 35g and some logs in /var/log totaled to be the other 5g of my 40g hard drive. I cleared out all the *.gz logs and after making sure the other logs werent going to do bad things if I messed with them, i just cleared them too.
echo "clear" > access.log
etc.
Check your /backup to see if you can delete an older not needed backup.
I had a similar issue, because of my replication binary logs.
If this is the case, just create a cronjob to run this query every day:
PURGE BINARY LOGS BEFORE DATE_SUB( NOW(), INTERVAL 2 DAY );
This will remove all binary logs older than 2 days.
I found this solution here.
A simple:
$sth->finish();
Would probably save you from worrying about this. Mysql uses the system's tmp space instead of it's own space.
sudo su
cd /var/log/mysql
and lastly type: > mysql-slow.log
This worked for me
Drop the problem database, then reboot mysql service (sudo service mysql restart, for example).
If you want to use the tokudb plugin
This can happen if you have less than 5% (by default) of free space.
see the option: tokudb_fs_reserve_percent
Got this from some mysql queries, puzzled since error 122 is usually a 'out of space' error but there's plenty of space left on the server... any ideas?
The answer: for some reason Mysql had its tmp tables on the /tmp partition which was limited to 100M, and was filled up by eaccelerator cache to 100M even though eaccel is limited to 16M of usage. Very weird, but I just moved eaccel cache elsewhere and problem solved.
Error 122 often indicates a "Disk over quota" error. Is it possible disk quotas exist on the server?
Try to turn off the disk quota using the quotaoff command.
Using the -a flag will turn off all file system quotas.
quotaoff -a
are you using innodb tables? if so, you might not have auto-grow turned on and inno can't expand the table space any more.
if these are myisam tables and it only happens on specific tables, i would suspect corruption. do a REPAIR on the tables in question.
I resolve this issue by increasing my disk size.
try df -h to check whether there are enough disk space on your server.