I am trying to delete several rows from a MySQL 5.0.45 database:
delete from bundle_inclusions;
The client works for a while and then returns the error:
Lock wait timeout exceeded; try restarting transaction
It's possible there is some uncommitted transaction out there that has a lock on this table, but I need this process to trump any such locks. How do I break the lock in MySQL?
I agree with Erik; TRUNCATE TABLE is the way to go. However, if you can't use that for some reason (for example, if you don't really want to delete every row in the table), you can try the following options:
Delete the rows in smaller batches (e.g. DELETE FROM bundle_inclusions WHERE id BETWEEN ? and ?)
If it's a MyISAM table (actually, this may work with InnoDB too), try issuing a LOCK TABLE before the DELETE. This should guarantee that you have exclusive access.
If it's an InnoDB table, then after the timeout occurs, use SHOW INNODB STATUS. This should give you some insight into why the lock acquisition failed.
If you have the SUPER privilege you could try SHOW PROCESSLIST ALL to see what other connections (if any) are using the table, and then use KILL to get rid of the one(s) you're competing with.
I'm sure there are many other possibilities; I hope one of these help.
Linux: In mysql configuration (/etc/my.cnf or /etc/mysql/my.cnf), insert / edit this line
innodb_lock_wait_timeout = 50
Increase the value sufficiently (it is in seconds), restart database, perform changes. Then revert the change and restart again.
I had the same issue, a rogue transaction without a end. I restarted the mysqld process. You don't need to truncate a table. You may lose data from that rogue transaction.
Guessing: truncate table bundle_inclusions
We have a one master and two VIP slave database servers. We changed data type of column from VARCHAR(255) to TEXT on master.
The application is currently configured to use master only for writing operations and configured slaves for reading operation.
After changing the data type on master server using ALTER TABLE command the slave server becomes unresponsive.
We are using Mariadb 10.0
[PROCESSES INFORMATION]
Id User Host Db Command Time(sec) State Info
-----------------------------------------------------------------------
203739 repl slave1 Binlog Dump 75,143,121 Master has sent all binlog to slave; waiting for binlog to be updated
203740 repl slave2 Binlog Dump 75,143,121 Master has sent all binlog to slave; waiting for binlog to be updated
The slave instance becomes very slow due to slow queries.
number of sessions: 1590
thread_pool_max_thread=500
Current value =648
After performing ALTER TABLE on Master server, it was replicating to slave server and in the same time number of sessions were get increased rapidly on slave server.
I think slaves becomes unresponsive because of slow queries.
But I don't know why this queries became so slow and slaves got unresponsive.
The DBA's saying that after executing ANALYZE TABLE command, the issue has been solved.
But I don't understand why this happened because ANALYZE TABLE only update the statistic information.
It would be helpful if anyone comment on this why it happened?
How to avoid such issues in future.
There is one minor case where TEXT is slower than VARCHAR. When a SELECT needs to build a temporary table (often for sorting due to GROUP BY or ORDER BY), it first tries to build a MEMORY table. But, TEXT and BLOB prevent it from using such, so it uses MyISAM instead. This is slower (but gets the job done).
I say this is a "minor case" because users rarely identify it with phrases like "very slow" and "becomes unresponsive". I would guess that a SELECT might run twice as slow.
Also, the ANALYZE TABLE discussion does not hold water. Again it may be coincidence, not causation.
So, the change to TEXT may be a 'red herring'. Instead, let's discover what is being slow by using the slowlog. See this for what I like to work from.
I have a Mysql master-slave(s) replication with MyISAM tables. All updates are done on the master and selects are done on either the master or slaves.
It appears that we might need to manually lock a few tables when we do certain updates. While this write lock is on the tables, no selects can happen on the locked table. But what about on the slaves? Does the lock propagate out?
Say I have table_A and table_B. I initiate a lock on table_A and table_B on the master and start performing the update. At this time no other connection can read table_A and table_B off the master? But what if at this time another connection tries to read the tables off of a slave, can they do so?
Everything that MySQL replicates can be found in the binary logs.
You can run the following command to see the details.
show global variables like 'log_bin%';
log_bin_basename will tell you the path to your binary logs with base file name.
and run
show binary logs
to find the binary files that are currently present on your server.
You can check the actual commands that are written to the file by using mysqlbinlog command together with the file name or by running show binlog events ... from the MySQL CLI.
Also, check what binlog_format are you using.
Basically - the lock of the tables is not directly propagated to slaves, but at the time, whey will execute the performed updates they will perform a lock of the updated table if needed.
As far as I know write locks do not propagate into the binlog, You can verify that by doing quick test and looking at the binlog. If you want to avoid issues on the master aswell and for some reason can not migrate to InnoDB consider integrating something like GET_LOCK() into your application instead of completely locking a table. MyISAM is quite iffy when it comes to concurrency.
From a script I sent a query like this thousands of times to my local database:
update some_table set some_column = some_value
I forgot to add the where part, so the same column was set to the same a value for all the rows in the table and this was done thousands of times and the column was indexed, so the corresponding index was probably updated too lots of times.
I noticed something was wrong, because it took too long, so I killed the script. I even rebooted my computer since then, but something stuck in the table, because simple queries take a very long time to run and when I try dropping the relevant index it fails with this message:
Lock wait timeout exceeded; try restarting transaction
It's an innodb table, so stuck the transaction is probably implicit. How can I fix this table and remove the stuck transaction from it?
I had a similar problem and solved it by checking the threads that are running.
To see the running threads use the following command in mysql command line interface:
SHOW PROCESSLIST;
It can also be sent from phpMyAdmin if you don't have access to mysql command line interface.
This will display a list of threads with corresponding ids and execution time, so you can KILL the threads that are taking too much time to execute.
In phpMyAdmin you will have a button for stopping threads by using KILL, if you are using command line interface just use the KILL command followed by the thread id, like in the following example:
KILL 115;
This will terminate the connection for the corresponding thread.
You can check the currently running transactions with
SELECT * FROM `information_schema`.`innodb_trx` ORDER BY `trx_started`
Your transaction should be one of the first, because it's the oldest in the list. Now just take the value from trx_mysql_thread_id and send it the KILL command:
KILL 1234;
If you're unsure which transaction is yours, repeat the first query very often and see which transactions persist.
Check InnoDB status for locks
SHOW ENGINE InnoDB STATUS;
Check MySQL open tables
SHOW OPEN TABLES WHERE In_use > 0;
Check pending InnoDB transactions
SELECT * FROM `information_schema`.`innodb_trx` ORDER BY `trx_started`;
Check lock dependency - what blocks what
SELECT * FROM `information_schema`.`innodb_locks`;
After investigating the results above, you should be able to see what is locking what.
The root cause of the issue might be in your code too - please check the related functions especially for annotations if you use JPA like Hibernate.
For example, as described here, the misuse of the following annotation might cause locks in the database:
#Transactional(propagation = Propagation.REQUIRES_NEW)
This started happening to me when my database size grew and I was doing a lot of transactions on it.
Truth is there is probably some way to optimize either your queries or your DB but try these 2 queries for a work around fix.
Run this:
SET GLOBAL innodb_lock_wait_timeout = 5000;
And then this:
SET innodb_lock_wait_timeout = 5000;
When you establish a connection for a transaction, you acquire a lock before performing the transaction. If not able to acquire the lock, then you try for sometime. If lock is still not obtainable, then lock wait time exceeded error is thrown. Why you will not able to acquire a lock is that you are not closing the connection. So, when you are trying to get a lock second time, you will not be able to acquire the lock as your previous connection is still unclosed and holding the lock.
Solution: close the connection or setAutoCommit(true) (according to your design) to release the lock.
Restart MySQL, it works fine.
BUT beware that if such a query is stuck, there is a problem somewhere :
in your query (misplaced char, cartesian product, ...)
very numerous records to edit
complex joins or tests (MD5, substrings, LIKE %...%, etc.)
data structure problem
foreign key model (chain/loop locking)
misindexed data
As #syedrakib said, it works but this is no long-living solution for production.
Beware : doing the restart can affect your data with inconsistent state.
Also, you can check how MySQL handles your query with the EXPLAIN keyword and see if something is possible there to speed up the query (indexes, complex tests,...).
Goto processes in mysql.
So can see there is task still working.
Kill the particular process or wait until process complete.
I ran into the same problem with an "update"-statement. My solution was simply to run through the operations available in phpMyAdmin for the table. I optimized, flushed and defragmented the table (not in that order). No need to drop the table and restore it from backup for me. :)
I had the same issue. I think it was a deadlock issue with SQL. You can just force close the SQL process from Task Manager. If that didn't fix it, just restart your computer. You don't need to drop the table and reload the data.
I had this problem when trying to delete a certain group of records (using MS Access 2007 with an ODBC connection to MySQL on a web server). Typically I would delete certain records from MySQL then replace with updated records (cascade delete several related records, this streamlines deleting all related records for a single record deletion).
I tried to run through the operations available in phpMyAdmin for the table (optimize,flush, etc), but I was getting a need permission to RELOAD error when I tried to flush. Since my database is on a web server, I couldn't restart the database. Restoring from a backup was not an option.
I tried running delete query for this group of records on the cPanel mySQL access on the web. Got same error message.
My solution: I used Sun's (Oracle's) free MySQL Query Browser (that I previously installed on my computer) and ran the delete query there. It worked right away, Problem solved. I was then able to once again perform the function using the Access script using the ODBC Access to MySQL connection.
Issue in my case: Some updates were made to some rows within a transaction and before the transaction was committed, in another place, the same rows were being updated outside this transaction. Ensuring that all the updates to the rows are made within the same transaction resolved my issue.
issue resolved in my case by changing delete to truncate
issue-
query:
delete from Survey1.sr_survey_generic_details
mycursor.execute(query)
fix-
query:
truncate table Survey1.sr_survey_generic_details
mycursor.execute(query)
This happened to me when I was accessing the database from multiple platforms, for example from dbeaver and control panels. At some point dbeaver got stuck and therefore the other panels couldn't process additional information. The solution is to reboot all access points to the database. close them all and restart.
Fixed it.
Make sure you doesn't have mismatched data type insert in query.
I had an issue where i was trying "user browser agent data" in VARCHAR(255) and having issue with this lock however when I changed it to TEXT(255) it fixed it.
So most likely it is a mismatch of data type.
I solved the problem by dropping the table and restoring it from backup.
I am trying to delete several rows from a MySQL 5.0.45 database:
delete from bundle_inclusions;
The client works for a while and then returns the error:
Lock wait timeout exceeded; try restarting transaction
It's possible there is some uncommitted transaction out there that has a lock on this table, but I need this process to trump any such locks. How do I break the lock in MySQL?
I agree with Erik; TRUNCATE TABLE is the way to go. However, if you can't use that for some reason (for example, if you don't really want to delete every row in the table), you can try the following options:
Delete the rows in smaller batches (e.g. DELETE FROM bundle_inclusions WHERE id BETWEEN ? and ?)
If it's a MyISAM table (actually, this may work with InnoDB too), try issuing a LOCK TABLE before the DELETE. This should guarantee that you have exclusive access.
If it's an InnoDB table, then after the timeout occurs, use SHOW INNODB STATUS. This should give you some insight into why the lock acquisition failed.
If you have the SUPER privilege you could try SHOW PROCESSLIST ALL to see what other connections (if any) are using the table, and then use KILL to get rid of the one(s) you're competing with.
I'm sure there are many other possibilities; I hope one of these help.
Linux: In mysql configuration (/etc/my.cnf or /etc/mysql/my.cnf), insert / edit this line
innodb_lock_wait_timeout = 50
Increase the value sufficiently (it is in seconds), restart database, perform changes. Then revert the change and restart again.
I had the same issue, a rogue transaction without a end. I restarted the mysqld process. You don't need to truncate a table. You may lose data from that rogue transaction.
Guessing: truncate table bundle_inclusions