Web request performance really bad under stress - mysql

I wrote a web application using python and Flask framework, and set it up on Apache with mod_wsgi.
Today I use JMeter to perform some load testing on this application.
For one web URL:
when I set only 1 thread to send request, the response time is 200ms
when I set 20 concurrent threads to send requests, the response time increases to more than 4000ms(4s). THIS IS UNACCEPTABLE!
I am trying to find the problem, so I recorded the time in before_request and teardown_request methods of flask. And it turns out the time taken to process the request is just over 10ms.
In this URL handler, the app just performs some SQL queries (about 10) in Mysql database, nothing special.
To test if the problem is with web server or framework configuration, I wrote another method Hello in the same flask application, which just returns a string. It performs perfectly under load, the response time is 13ms with 20-thread concurrency.
And when doing the load test, I execute 'top' on my server, there are about 10 apache threads, but the CPU is mostly idle.
I am at my wit's end now. Even if the request are performed serially, the performance should not drop so drastically... My guess is that there is some queuing somewhere that I am unaware of, and there must be overhead besides handling the request.
If you have experience in tuning performance of web applications, please help!
EDIT
About apache configuration, I used MPM worker mode, the configuration:
<IfModule mpm_worker_module>
StartServers 4
MinSpareThreads 25
MaxSpareThreads 75
ThreadLimit 64
ThreadsPerChild 50
MaxClients 200
MaxRequestsPerChild 0
</IfModule>
As for mod_wsgi, I tried turning WSGIDaemonProcess on and off (by commenting the following line out), the performance looks the same.
# WSGIDaemonProcess tqt processes=3 threads=15 display-name=TQTSERVER

Congratulations! You found the performance problem - not your users!
Analysing performance problems on web applications is usually hard, because there are so many moving parts, and it's hard to see inside the application while it's running.
The behaviour you describe is usually associated with a bottleneck resource - this happens when there's a particular resource that can't keep up, so queues requests, which tends to lead to a "hockey stick" curve with response times - once you hit the point where this resource can't keep up, the response time goes up very quickly.
20 concurrent threads seems low for that to happen, unless you're doing a lot of very heavy lifting on the page.
First place to start is TOP - while CPU is low, what's memory, disk access etc. doing? Is your database running on the same machine? If not, what does TOP say on the database server?
Assuming it's not some silly hardware thing, the next most likely problem is the database access on that page. It may be that one query is returning literally the entire database when all you want is one record (this is a fairly common anti pattern with ORM solutions); that could lead to the behaviour you describe. I would use the Flask logging framework to record your database calls (start, end, number of records returned), and look for anomalies there.
If the database is performing well under load, it's either the framework or the application code. Again, use logging statements in the code to trace the execution time of individual blocks of code, and keep hunting...
It's not glamorous, and can be really tedious - but it's a lot better that you found this before going live!

Look at using New Relic to identify where the bottleneck is. See overview of it and discussion of identifying bottlenecks in my talk:
http://lanyrd.com/2012/pycon/spcdg/
Also edit your original question and add the mod_wsgi configuration you are using, plus whether you are using Apache prefork or worker MPM as you could be doing something non optimal there.

Related

Implementing dynamically updating upvote/downvote

How to implement dynamically updating vote count similar to quora:- Whenever a user upvotes an answer its reflected automatically for every one who is viewing that page.
I am looking for an answer that address following:
Do we have to keep polling for upvote counts for every answer, If yes
then how to manage the server load arising because of so many users
polling for upvotes.
Or to use websockits/push notifications, how scalable are these?
How to store the upvote/downvote count in databases/inmemory to support this. How do they control the number of read/writes. My backend database is mysql
The answer I am looking for may not be exactly how quora is doing it, but may be how this can be done using available opensource technologies.
It's not the back-end system details that you need to worry about but the front end. Having connection being open all the time is impractical at any real scale. Instead you want the opposite - to be able to serve and close connection from back-end as fast as you can.
Websockets is a sexy technology, but again, in real world there are issues with proxies, if you are developing something that should work on a variety of screens (desktop, tablet, mobile) it might became a concern to you. Even good-old long polls might not work through firewalls and proxies.
Here is a good news: I think
"keep polling for upvote counts for every answer"
is a totally good solution in this case. Consider the following:
your use-case does not need any real real-time updates. There is little harm to see the counter updated a bit later
for very popular topics you would like to squash multiple up-votes/down-votes into one anyway
most of the topics will see no up-vote/down-vote traffic at all for days/weeks, so keeping a connection open, waiting for an event that never comes is a waste
most of the user will never up-vote/down-vote that just came to read a topic, so your read/write ration of topics stats will be greatly skewed toward reads
network latencies varies hugely across clients, you will see horrible transfer rates for a 100B http responses, while this sluggish client is fetching his response byte-by-byte your precious server connection and what is more importantly - thread on a back end server is busy
Here is what I'd start with:
have browsers periodically poll for a new topic stat, after the main page loads
keep your MySQL, keep counters there. Every time there is an up/down vote update the DB
put Memcached in front of the DB as a write-through cache i.e. every time there is an up/down vote update cache, then update DB. Set explicit expire time for a counter there to be 10-15 minutes . Every time counter is updated expire time is prolongated automatically.
design these polling http calls to be cacheable by http proxies, set expire and ttl http headers to be 60 sec
put a reverse proxy(Varnish, nginx) in front of your front end servers, have this proxy do the caching of the said polling calls. These takes care of the second level cache and help free up backend servers threads quicker, see network latencies concern above
set-up your reverse proxy component to talk to memcached servers directly without making a call to the backend server, yes if your can do it with both Varnish and nginx.
there is no fancy schema for storing such data, it's a simple inc()/dec() operation in memcached, note that it's safe from the race condition point of view. It's also a safe atomic operation in MySQL UPDATE table SET field = field + 1 WHERE [...]
Aggressive multi level caching covers your read path: in Memcached and in all http caches along the way, note that these http poll requests will be cached on the edges as well.
To take care of the long tail of unpopular topic - make http ttl for such responses reverse proportional to popularity.
A read request will only infrequently gets to the front end server, when http cache expired and memcached does not have it either. If that is still a problem, add memecached servers and increase expire time in memcached across the board.
After you done with that you have all the reads taken care of. The only problem you might still have, depending on the scale, is high rate of writes i.e. flow of up/down votes. This is where your single MySQL instance might start showing some lags. Fear not - proceed along the old beaten path of sharding your instances, or adding a NoSQL storage just for counters.
Do not use any messaging system unless absolutely necessary or you want an excuse to play with it.
Websockets, Server Sent Events (I think that's what you meant by 'push notifications') and AJAX long polling have the same drawback - they keep underlying TCP connection open for a long time.
So the question is how many open TCP connections can a server handle.
Basically, it depends on its OS, number of file descriptors (a config parameter) and available memory (each open connection reserves a read/write buffers).
Here's more on that.
We once tested a possibility to keep 1 million websocket connections open on a single server (Windows 7 x64 with 16Gb of RAM, JVM 1.7 with 8Gb of heap, using Undertow beta to serve Web requests).
Surprisingly, the hardest part was to generate the load on the server )
It managed to hold 1M. But again the server didn't do something useful, just received requests, went through protocol upgrade and kept those connections open.
There was also some number of lost connections, for whatever reason. We didn't investigate. But in production you would also have to ping the server and handle reconnection.
Apart from that, Websockets seem like an overkill here, SSE still aren't widely adopted.
So I would go with good old AJAX polling, but optimize it as much as possible.
Works everywhere, simple to implement and tweak, no reliance on an external system (I had bad experience with that several times), possibilities for optimization.
For instance, you could group updates for all open articles in a single browser, or adjust update interval according to how popular the article is.
After all it doesn't seem like you need real-time notifications here.
sounds like you might be able to use a messaging system like Kafka, or RabbitMQ, or ActiveMQ. Your front end would sent votes to a message channel and receive them with a listener, and you could have a server side piece persist the votes to the db periodically.
You could also accomplish your task by polling your database, and by incre/decre menting a number related to a post via a stored proc... there are a bunch of options here and it depends on how much concurrency you may be facing.

Nginx Vs Apache to solve load isseu on website

So Have a web application that has 10-12 pages with many POST/ GET DB Calls. We usually have a apache crash/other problem when site traffic results to 1000 or so (concurrent users) which is very small number, we have updated server with good RAM and resources. When our system admin guy do load testing on blitz and other custom script and is suggesting to move away from Apache. Some things does not make sense to me. Like Apache is not too bad to handle few thousand of concurrent users considering we have cloudflare for caching. Here is what he suggested:
replacement of Apache+mod_fcgi with Nginx+php-fpm which can make the server handle much more users, and then test it.
or
2. For testing: Need 10-20 servers to run a scenario from. Basically, what is needed is a more complex blitz.io analogue. create one server, which takes all those hours, then just clone it in the cloud and pay for about 1 hour of testing multiplied by the number of servers needed.
Once again there are many DB calls anf HT access. ALso what makes Nginx better than apache in this case?
I would check this comparison first. Basically, nginx is event based, so it's able to handle more requests concurrently. However, as the MySQL DB seems to be the choke point here, it's very possible that nginx wouldn't solve all your problems. Perhaps moving to a NoSQL kind of database, that's better at scaling horizontally, would help (if that's feasible).

How to find out what is causing a slow down of the application?

This is not the typical question, but I'm out of ideas and don't know where else to go. If there are better places to ask this, just point me there in the comments. Thanks.
Situation
We have this web application that uses Zend Framework, so runs in PHP on an Apache web server. We use MySQL for data storage and memcached for object caching.
The application has a very unique usage and load pattern. It is a mobile web application where every full hour a cronjob looks through the database for users that have some information waiting or action to do and sends this information to a (external) notification server, that pushes these notifications to them. After the users get these notifications, the go to the app and use it, mostly for a very short time. An hour later, same thing happens.
Problem
In the last few weeks usage of the application really started to grow. In the last few days we encountered very high load and doubling of application response times during and after the sending of these notifications (so basically every hour). The server doesn't crash or stop responding to requests, it just gets slower and slower and often takes 20 minutes to recover - until the same thing starts again at the full hour.
We have extensive monitoring in place (New Relic, collectd) but I can't figure out what's wrong; I can't find the bottlekneck. That's where you come in:
Can you help me figure out what's wrong and maybe how to fix it?
Additional information
The server is a 16 core Intel Xeon (8 cores with hyperthreading, I think) and 12GB RAM running Ubuntu 10.04 (Linux 3.2.4-20120307 x86_64). Apache is 2.2.x and PHP is Version 5.3.2-1ubuntu4.11.
If any configuration information would help analyze the problem, just comment and I will add it.
Graphs
info
phpinfo()
apc status
memcache status
collectd
Processes
CPU
Apache
Load
MySQL
Vmem
Disk
New Relic
Application performance
Server overview
Processes
Network
Disks
(Sorry the graphs are gifs and not the same time period, but I think the most important info is in there)
The problem is almost certainly MySQL based. If you look at the final graph mysql/mysql_threads you can see the number of threads hits 200 (which I assume is your setting for max_connections) at 20:00. Once the max_connections has been hit things do tend to take a while to recover.
Using mtop to monitor MySQL just before the hour will really help you figure out what is going on but if you cannot install this you could just using SHOW PROCESSLIST;. You will need to establish your connection to mysql before the problem hits. You will probably see lots of processes queued with only 1 process currently executing. This will be the most likely culprit.
Having identified the query causing the problems you can attack your code. Without understanding how your application is actually working my best guess would be that using an explicit transaction around the problem query(ies) will probably solve the problem.
Good luck!

Django--Killing my Server with Inefficient Code Or Bad Apache SetUp?

I was benchmarking my production server (it's in Beta) and the results were poor to say the least. On pages without any dynamic content, 1000 Requests with a concurrency of 1 returned 73 Requests/Sec.
When I start to add MYSQL queries to the equation, things quickly spiral out of control. The same 1000 requests on my homepage produce the following results:
CPU spikes to 50%
Load spikes to 3.7 (though that doesn't always happen)
complete request:1000
failed requests:0
write errors:0
requests/sec: 2.44
transfer rate: 113.26[Kbytes/sec]
90% of requests are served within 142ms.
95% of requests are served within 3531ms (it just keeps getting worse after that).
Taking a look at top while I run the benchmark
mysqld runs as a process is consuming roughly 7% of memory and 2.5% cpu
Apache seems to spawn 7 concurrent processes at times
At other points, Apache does not show up in Top
I'm running preforked Apache on a Micro AWS instance (ubuntu) and I'll upgrade to a higher instance, but I worry that there is an underlying problem here with the code or my Apache setup.
I am deploying Django with Mod_WSGI and I set KeepAliveTimeout to 3 just in case a couple of slow processes were screwing me up.
My code for the homepage is seemingly straightforward and though it requires joins.
def index(request):
posts=Post.objects.filter(photo__isnull=False).order_by('date').distinct()[0:7]
ohouses=Open_House.objects.filter(post__photo__isnull=False).order_by('day').distinct()[0:4]
return render_to_response("index.html", {'posts':posts,'ohouses':ohouses},context_instance=RequestContext(request))
I have left the default configuration in place for MYSQL.
Could this all be attributable to running a Micro Instance? Could my instance be somewhat corrupted? Any other plausible explanations?
There's a ton that goes into quick response times. Django is pretty optimized for what it is, but relying on a framework alone will never get you where you want to be.
If you're going to use Apache, use the MPM fork, and even then disable all modules you don't absolutely need. Apache can be made to run fast, but it's not the fastest horse out there. You'll do better with something like Nginx or (cringe) Cherokee. Cherokee is a good webserver, but usability index is like zero.
Any static resources should be served directly by your webserver or better yet, off a CDN.
Assuming you've optimized your own code to not make inefficient use of queries, Django's built in, automatic query caching will help reduce the overall amount of queries needed to the database. After that, you need to employ something like memcached.
Then, there's the server itself. Depending on the size of your site, you may not need much RAM and CPU, but it's always better to have too much than not enough. It might be beneficial to put some artificial load on your server (automated testing, spidering your site, etc), and see how your system resources hold up. If you get anywhere near capping out (I'd say over 50% with simple tests like that), you need to add some more into your instance's pool.
Search online for articles on how to optimize MySQL. Out of the box, it tends to use a lot more resources than it actually needs; there's lots of room for improvement there. And, if it's not already on its own server, consider strongly offloading it to it's own server. If you're anticipating a lot of traffic, the same server responding to web requests and fetching data from a database will become a bottleneck quick.
Could this all be attributable to running a Micro Instance?
Micro instances burst to 2 CPUs for a short period of time, after which they are severely capped for several minutes. I wouldn't trust any benchmarks done on a Micro EC2 instance for that reason.

How to benchmark and optimize a really database-intensive Rails action?

There is an action in the admin section of a client's site, say Admin::Analytics (that I did not build but have to maintain) that compiles site usage analytics by performing a couple dozen, rather intensive database queries. This functionality has always been a bottleneck to application performance whenever the analytics report is being compiled. But, the bottleneck has become so bad lately that, when accessed, the site comes to a screeching halt and hangs indefinitely. Until yesterday I never had a reason to run the "top" command on the server, but doing so I realized that Admin::Analytics#index causes mysqld to spin at upwards of 350+% CPU power on the quad-core, production VPS.
I have downloaded fresh copies of production data and the production log. However, when I access Admin::Analytics#index locally on my development box, while using the production data, it loads in about 10 - 12 seconds (and utilizes ~ 150+% of my dual-core CPU), which sadly is normal. I suppose there could be a discrepancy in mysql settings that has suddenly come into play. Also, a mysqldump of the database is now 531 MB, when it was only 336 MB 28 days ago.  Anyway, I do not have root access on the VPS, so tweaking mysqld performance would be cumbersome, and I would really like to get to the exact cause of this problem. However, the production logs don't contain info. on the queries; they merely report the length that these requests took, which average out to a few minutes apiece (although they seemed to have caused mysqld to stall for much longer than this and prompting me to request our host to reboot mysqld just to get our site back up in one instance).
I suppose I can try upping the log level in production to solicit info. on the database queries being performed by Admin::Analytics#index, but at the same time I'm afraid to replicate this behavior in production because I don't feel like calling our host up to restart mysqld again! This action contains a single database request in its controller, and a couple dozen prepared statements embedded in its view!
How would you proceed to benchmark/diagnose and optimize/fix this action?!
(Aside: Obviously I would like to completely replace this functionality with Google Analytics or a similar solution, but I need fix this problem before proceeding.)
I'd recommend taking a look at this article:
http://axonflux.com/building-and-scaling-a-startup
Particularly, query_reviewer and newrelic have been a life-saver for me.
I appreciate all the help with this, but what turned out to be the fix for this was to implement a couple of indexes on the Analytics table to cater to the queries in this action. A simple Rails migration to add the indexes and the action now loads in less than a second both on my dev box and on prod!