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I have installed BLAST+ on my Linux machine along with a local copy of the microbial database. "blastn" works fine with queries like
blastn -query query.txt -db 16SMicrobial
However, blastp fails e.g.
blastp -query query_protein.txt -db 16SMicrobial
gives
BLAST Database error: No alias or index file found for protein
database [16SMicrobial] in search path [..../databases]
My database directory has these files-
16SMicrobial.nhr 16SMicrobial.nnd 16SMicrobial.nog 16SMicrobial.nsi
16SMicrobial.nin 16SMicrobial.nni 16SMicrobial.nsd 16SMicrobial.nsq
My .ncbirc file has
[NCBI]
DATA=.../databases
[BLAST]
BLASTDB=.../databases
Any idea of what could be wrong please?
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I am looking for a way to backup MySql database use a C program. Does MySql provide API for backup?
No, mysql does not provide any dpecific api to back a database up.
Mysql does provide the mysqldump utility that can be called from the command line to back up a database and also provides a general C api to access a mysql server. The heneral api can be used to write your own backup program if you are unhappy with mysqldump.
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Closed 8 years ago.
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I dont have phpmyadmin on my server. Dont really need it, but I need to run one query, is it possible to do it via SSH? CentOS 6.5
command that I need to run looks like this
update wp_wpa_anm set cat = concat(cat,'12,') where scp_egn = 'aut'
Something like this should work
mysql -u username -p database_name -ppassword -e "Select 1"
Have a look here for more examples
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I need reproduce the exact same environment of a system in production, it's working with mysql 4.1.3b-beta-nt-max version, where I can get this exact version? I have looking with google but it seems like it's no longer available anywhere.
Thanks.
Try searching historical databases such as
http://www.oldapps.com/mysql_server.php?old_mysql_server=131
...in a pinch, you can install a "similar" version (such as the one above, 4.1.3beta-win), and then replace the binaries with the production ones. MySQL doesn't do strange things with the registry, so this procedure should suffice.
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I'm trying to edit my MySQL database after a long time of taking a rest, and I'm pretty confused what's what. Do you know of any application or a way in which I could import or merge my db on server into an application that will not only allow me to work with the database on my local pc, but be able to view the structure and relations visually?
Thank you :)))
You can use the MySQL Workbench [1]. There you can generate a ERD (=Model) from your remote and/or local MySql Database. Furthermore you can manage your user accounts, edit tables and datas and much much more...
[1]... http://www.mysql.com/products/workbench/
Head on over here http://dev.mysql.com/downloads/installer/
The Mysql Workbench included in the installer should help
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How can I create this file in a directory in windows 2003 SP2:
.hgignore
I get error: You must type a file name.
That's a "feature" of Windows Explorer. Try to create your files from a command line (or from a batch/program you wrote) and it should work fine. Try this from a dos prompt:
echo Hello there! > .hgignore
By the way Raymond Chen had a blog post about this topic a while back:
Why doesn't Explorer let you create a file whose name begins with a dot? (archive.org link with comments: https://web.archive.org/web/20100305064616/http://blogs.msdn.com/oldnewthing/archive/2008/04/14/8389268.aspx)
In which he mentions
You can do it from the command line or
use your favorite file management
tool.