Update rows then Insert new associated rows, or restructure data? - mysql

Let's set the stage, PHP & MYSQL:
I have a table we'll call Directions to hold each step for a given task. Each task has variable steps.
The only real essential fields for this question are (primary) step_id,**task_id**, step.
When the author updates their directions, they can update each step, add new ones, remove old ones.
I understand how to handle the updating / insertion / deleting logic structure
INSERT ... ON DUPLICATE KEY ... and so on.
My concern lies elsewhere. Say someone writes directions for task #1, five months later they update task #1 with a few new steps. In that time, there are 1000 new tasks.
Is it really an issue that the majority of steps for task #1 will be located in say... step_id 1-10, and that new step will be way down in 10001?
Since I run no specific computations on the steps, is this a situation where I'm better off storing each step as a serialized array in a single row?

I believe task_id is quite essential field for this question too. If it is indexed you won't have any performance issues with selecting steps for a given task no matter how separated they are in your table.
With steps serialized you would have more issues as you would have to deserialize them for every update/delete, serialize again and then update the row, also you could run into problems with column size unless you limit number of steps for every task.

Related

How to model referential integrity for one-to-many relationship, where many > 0

I cannot figure out how to ensure data integrity on DB level in a case where I have a 1:N relationship, where N has to be at least one. Let me describe:
I have Datasets and Stored filters. Stored filters can be associated with/applied to more than one dataset, but always at least one. When the last associated dataset is removed, so should be the filter as to not have dangling filters. The inverse is not true (when a filter is removed, no changes to datasets). Is there a way to model this behavior in RDBMS like MySQL/MariaDB/PostgreSQL? Or am I destined to resolve this on the code level?
This is a tricky relationship to represent. The problem is probably more apparent in inserting rows:
You can't insert a filter until you have a dataset.
You can't insert a dataset until it has a filter.
My suggestion is that you manage this using an on delete trigger on datasets. If the last dataset for a filter is deleted, then delete the associated filter.
Or, just use a soft delete. Use a trigger to maintain a counter of the number of datasets on a filter. When the counter is 0, then the filter is inactive.
From the other side - is immediate "filter without datasets" removing critical? maybe, simple event procedure which scans filters table and removes non-referential filters, with some period (for example each minute), is enough? – Akina
#Akina not critical just would require an additional check on the application code part to ensure that there is actually a dataset present. Right now it is treated as implicit truth. – Patrick Kusebauch
CREATE EVENT remove_dangling_filters
ON SCHEDULE EVERY 1 MINUTE
DO
DELETE FROM filters
WHERE NOT EXISTS ( SELECT NULL
FROM datasets
WHERE datasets.filter_id = filters.id );
If some filter have no related datasets (last related dataset removed) then this filter will be deleted within a minute.
Adjust deleting query according to real structures and relations. Add additional logic if needed (for example, copying the filter to archive table, writing log, etc.). Adjust execution schedule to safe period (not recommended to do it less than 5-10 second).
Created once. Application logic not needed.
Do not forget to enable Event Scheduler.

best approach to exchanging data dumps between organizations

I am working a project where I will receive student data dumps once a month. The data will be imported into my system. The initial import will be around 7k records. After that, I don't anticipate more than a few hundred a month. However, there will also be existing records that will be updated as the student changes grades, etc.
I am trying to determine the best way to keep track of what has been received, imported, and updated over time.
I was thinking of setting up a hosted MySQL database with a script that imports the SFTP dump into a table that includes a creation_date and a modification_date field. My thought was, the person performing the extraction, could connect to the MySQL db and run a query on the imported table each month to get the differences before the next extraction.
Another thought I had, was to create a new received table every month for each data dump. Then I would perform the query on the differences.
Note: The importing system is legacy and will accept imports using a utility and unique csv type files. So that probably rules out options like XML.
Thank you in advance for any advice.
I'm going to assume you're tracking students' grades in a course over time.
I would recommend a two table approach:
Table 1: transaction level data. Add-only. New information is simply appended on. Sammy got a 75 on this week's quiz, Beth did 5 points extra credit, etc. Each row is a single transaction. Presumably it has the student's name/id, the value being added, maybe the max possible value or some weighting factor, and of course the timestamp added.
All of this just keeps adding to a never-ending (in theory) table.
Table 2: summary table, rebuilt at some interval. This table does a simple aggregation on the first table, processing the transactional scores into a global one. Maybe it's a simple sum, maybe it's a weighted average, maybe you have something more complex in mind.
This table has one row per student (per course?). You want this to be rebuilt nightly. If you're lazy, you just DROP/CREATE/INSERT. If you're worried about data-loss, you just INSERT and add a timestamp so you can have snapshots going back.

How to retrieve the new rows of a table every minute

I have a table, to which rows are only appended (not updated or deleted) with transactions (I'll explain why this is important), and I need to fetch the new, previously unfetched, rows of this table, every minute with a cron.
How am I going to do this? In any programming language (I use Perl but that's irrelevant.)
I list the ways I thought of how to solve this problem, and ask you to show me the correct one (there HAS to be one...)
The first way that popped to my head was to save (in a file) the largest auto_incrementing id of the rows fetched, so in the next minute I can fetch with: WHERE id > $last_id. But that can miss rows. Because new rows are inserted in transactions, it's possible that the transaction that saves the row with id = 5 commits before the transaction that saves the row with id = 4. It's therefore possible that the cron script retrieves row 5 but not row 4, and when row 4 gets committed one split second later, it will never gets fetched (because 4 is not > than 5 which is the $last_id).
Then I thought I could make the cron job fetch all rows that have a date field in the last TWO minutes, check which of these rows have been retrieved again in the previous run of the cron job (to do this I would need to save somewhere which row ids were retrieved), compare, and process only the new ones. Unfortunately this is complicated, and also doesn't solve the problem that will occur if a certain inserting transaction takes TWO AND A HALF minutes to commit for some weird database reason, which will cause the date to be too old for the next iteration of the cron job to fetch.
Then I thought of installing a message queue (MQ) like RabbitMQ or any other. The same process that does the inserting transaction, would notify RabbitMQ of the new row, and RabbitMQ would then notify an always-running process that processes new rows. So instead of getting a batch of rows inserted in the last minute, that process would get the new rows one-by-one as they are written. This sounds good, but has too many points of failure - RabbitMQ might be down for a second (in a restart for example) and in that case the insert transaction will have committed without the receiving process having ever received the new row. So the new row will be missed. Not good.
I just thought of one more solution: the receiving processes (there's 30 of them, doing the exact same job on exactly the same data, so the same rows get processed 30 times, once by each receiving process) could write in another table that they have processed row X when they process it, then when time comes they can ask for all rows in the main table that don't exist in the "have_processed" table with an OUTER JOIN query. But I believe (correct me if I'm wrong) that such a query will consume a lot of CPU and HD on the DB server, since it will have to compare the entire list of ids of the two tables to find new entries (and the table is huge and getting bigger each minute). It would have been fast if the receiving process was only one - then I would have been able to add a indexed field named "have_read" in the main table that would make looking for new rows extremely fast and easy on the DB server.
What is the right way to do it? What do you suggest? The question is simple, but a solution seems hard (for me) to find.
Thank you.
I believe the 'best' way to do this would be to use one process that checks for new rows and delegates them to the thirty consumer processes. Then your problem becomes simpler to manage from a database perspective and a delegating process is not that difficult to write.
If you are stuck with communicating to the thirty consumer processes through the database, the best option I could come up with is to create a trigger on the table, which copies each row to a secondary table. Copy each row to the secondary table thirty times (once for each consumer process). Add a column to this secondary table indicating the 'target' consumer process (for example a number from 1 to 30). Each consumer process checks for new rows with its unique number and then deletes those. If you are worried that some rows are deleted before they are processed (because the consumer crashes in the middle of processing), you can fetch, process and delete them one by one.
Since the secondary table is kept small by continuously deleting processed rows, INSERTs, SELECTs and DELETEs would be very fast. All operations on this secondary table would also be indexed by the primary key (if you place the consumer ID as first field of the primary key).
In MySQL statements, this would look like this:
CREATE TABLE `consumer`(
`id` INTEGER NOT NULL,
PRIMARY KEY (`id`)
);
INSERT INTO `consumer`(`id`) VALUES
(1),
(2),
(3)
-- all the way to 30
;
CREATE TABLE `secondaryTable` LIKE `primaryTable`;
ALTER TABLE `secondaryTable` ADD COLUMN `targetConsumerId` INTEGER NOT NULL FIRST;
-- alter the secondary table further to allow several rows with the same primary key (by adding targetConsumerId to the primary key)
DELIMTER //
CREATE TRIGGER `mark_to_process` AFTER INSERT ON `primaryTable`
FOR EACH ROW
BEGIN
-- by doing a cross join with the consumer table, this automatically inserts the correct amount of rows and adding or deleting consumers is just a matter of adding or deleting rows in the consumer table
INSERT INTO `secondaryTable`(`targetConsumerId`, `primaryTableId`, `primaryTableField1`, `primaryTableField2`) SELECT `consumer`.`id`, `primaryTable`.`id`, `primaryTable`.`field1`, `primaryTable`.`field2` FROM `consumer`, `primaryTable` WHERE `primaryTable`.`id` = NEW.`id`;
END//
DELIMITER ;
-- loop over the following statements in each consumer until the SELECT doesn't return any more rows
START TRANSACTION;
SELECT * FROM secondaryTable WHERE targetConsumerId = MY_UNIQUE_CONSUMER_ID LIMIT 1;
-- here, do the processing (so before the COMMIT so that crashes won't let you miss rows)
DELETE FROM secondaryTable WHERE targetConsumerId = MY_UNIQUE_CONSUMER_ID AND primaryTableId = PRIMARY_TABLE_ID_OF_ROW_JUST_SELECTED;
COMMIT;
I've been thinking on this for a while. So, let me see if I got it right. You have a HUGE table in which N, amount which may vary in time, processes write (let's call them producers). Now, there are these M, amount which my vary in time, other processes that need to at least process once each of those records added (let's call them consumers).
The main issues detected are:
Making sure the solution will work with dynamic N and M
It is needed to keep track of the unprocessed records for each consumer
The solution has to escalate as much as possible due to the huge amount of records
In order to tackle those issues I thought on this. Create this table (PK in bold):
PENDING_RECORDS(ConsumerID, HugeTableID)
Modify the consumers so that each time they add a record to the HUGE_TABLE they also add M records to the PENDING_RECORDS table so that it has the HugeTableID and also each of the ConsumerID that exist at that time. Each time a consumer runs it will query the PENDING_RECORDS table and will find a small amount of matches for itself. It will then join against the HUGE_TABLE (note it will be an inner join, not a left join) and fetch the actual data it needs to process. Once the data is processed then the consumer will delete the records fetched from the PENDING_RECORDS table, keeping it decently small.
Interesting, i must say :)
1) First of all - is it possible to add a field to the table that has rows only added (let's call it 'transactional_table')? I mean, is it a design paradigm and you have a reason not to do any sort of updates on this table, or is it "structurally" blocked (i.e. user connecting to db has no privileges to perform updates on this table) ?
Because then the simplest way to do it is to add "have_read" column to this table with default 0, and update this column on fetched rows with 1 (even if 30 processess do this simultanously, you should be fine as it would be very fast and it won't corrupt your data). Even if 30 processess mark the same 1000 rows as fetched - nothing is corrupt. Although if you do not operate on InnoDB, this might be not the best way as far as performance is concerned (MyISAM locks whole tables on updates, InnoDB only rows that are updated).
2) If this is not what you could use - I would surely check out the solution you gave as your last one, with a little modification. Create a table (let's say: fetched_ids), and save fetched rows' ids in that table. Then you could use something like :
SELECT tt.* from transactional_table tt
RIGHT JOIN fetched_ids fi ON tt.id = fi.row_id
WHERE fi.row_id IS NULL
This will return the rows from you transactional table, that have not been saved as already fetched. As long as both (tt.id) and (fi.row_id) have (ideally unique) indexes, this should work just fine even on large sets of data. MySQL handles JOINS on indexed fields pretty well. Do not fear trying out - create new table, copy ids to it, delete some of them and run your query. You'll see the results and you'll know if they are satisfactory :)
P.S. Of course, adding rows to this 'fetched_ids' table should be ran carefully not to create unnecessary duplicates (30 simultaneous processes could write 30 times the data you need - and if you need performance, you should watch out for this case).
How about a second table with a structure like this:
source_fk - this would hold an ID of the data rows you want to read.
process_id - This would be a unique id for one of the 30 processes.
then do a LEFT JOIN and exclude items from your source that have entries matching the specified process_id.
once you get your results, just go back and add the source_fk and process_id for each result you get.
One plus about this is you can add more processes later on with no problem.
I would try adding a timestamp column and use it as a reference when retrieving new rows.

MySQL Partitioning, Delete old data from multiple related tables

I am new to MySQL partitioning, therefore any example will be appreciated.
I am trying to create a sort of an ageing mechanism for a data that is distributed between several MyISAM tables.
My question will actually include several sub-questions.
The relevant tables are:
First table contains raw data with high input frequency (next to each record there is an auto incremented id).
Second table contains processed results, there is a result record per every raw data record (result record contains the source id record of the auto incremented field of raw data record)
Questions:
I need to be able to partition the raw data table and result data table similarly so that both of them will include only 10 weeks of data in single partition (each raw data record contains unixtimestamp field), how do i do it , can someone write small example case for two such tables?.
I want to be able to change the 10 weeks constraint on the fly.
I want that when ever the current partition will be filled or a new partition is created , the previous (10 weeks before) partition will be deleted automatically.
I don't want the auto increment id integer to be overflown, as much as i understand the ids are unique for the partition only, so if i am not wrong the auto increment id will start from zero for the next partition? but what if the previous partition still exist, will i have 2 duplicated ids , how i know to reference only for the last id when i present a result record?
I want to load raw data using LOAD DATA INTO... instead of multiple inserts , is MySQL partitioning functionality affected?
And the last question, would you suggest some other approach to implement aging mechanism (i am writing Java implementation product that processes around 1 GB or raw data per day and stores the results in MySQL)
It's hard to give a real answer on this question since it depends on your data. But let me give you some things to think about.
I assume we're talking about some kind of logs with recent data (so not spanning multiple years). You can partition by range. You could add one field to your table with the year/week number (ie 201201, 201202, etc). If this question is related to your question about importing into multiple tables, you can easily do this is that import script.
On the fly as in, repartition your data on the fly (70GB?). I would not recommend it. But you could do it if you had the weeknumber in there. If you later want to change it to 12 days, you could add a column for the date and partition by that.
Well it won't be deleted automatically but a cron job can handle that right? Just check how many partitions there are, and if there are 3(?) delete the first one.
The partition needs to have a primary index on the field that you partition (if you want to use auto increment). Therefor you can never fully rely on the auto increment id alone. I don't see a way around this.
I'm not sure what you mean.
If your data is just some logs in chronological order then you might just use separate tables for each period. Then before you start the new period (at 00:00) check the last id of the last table, create a new table and set the auto increment to that value +1. Then your import will decide when a new period will begin so it can be easily changed. Your import script can use a small table in where it can store the next period.
LOAD DATA is really quite fast. I would just have two steps(in no partic order) - LOAD DATA and then 'delete .. where date < 10 weeks'. Autoincrement will go on for as long as the datatype you're using. If you wanted to be super careful you could push it back to zero periodically.
Once the data is in the 'raw' table run your routine to create the 'processed' table. We use a v similar process where I work. We keep a separate table that has 'write' and 'parse' pointers to all of our 'raw' tables. As new data comes in and gets parsed the appropriate row pointers get set. If the 'raw' table gets truncated you can reset the 'write' pointer but leave the 'parse' pointer. (we store the offset in another table when this happens - just to be sure).
And if I recommend , creating the index column for each of the related columns can also enhanced the performance Delete old data from multiple related tables since we have just compared the index numbers rather than strings.
I wonder if your tables are being sorted or not.

Versioned and indexed data store

I have a requirement to store all versions of an entity in a easily indexed way and was wondering if anyone has input on what system to use.
Without versioning the system is simply a relational database with a row per, for example, person. If the person's state changes that row is changed to reflect this. With versioning the entry should be updated in such a way so that we can always go back to a previous version. If I could use a temporal database this would be free and I would be able to ask 'what is the state of all people as of yesterday at 2pm living in Dublin and aged 30'. Unfortunately there doesn't seem to be any mature open source projects that can do temporal.
A really nasty way to do this is just to insert a new row per state change. This leads to duplication, as a person can have many fields but only one changing per update. It is also then quite slow to select the correct version for every person given a timestamp.
In theory it should be possible to use a relational database and a version control system to mimic a temporal database but this sounds pretty horrendous.
So I was wondering if anyone has come across something similar before and how they approached it?
Update
As suggested by Aaron here's the query we currently use (in mysql). It's definitely slow on our table with >200k rows. (id = table key, person_id = id per person, duplicated if the person has many revisions)
select name from person p where p.id = (select max(id) from person where person_id = p.person_id and timestamp <= :timestamp)
Update
It looks like the best way to do this is with a temporal db but given that there aren't any open source ones out there the next best method is to store a new row per update. The only problem is duplication of unchanged columns and a slow query.
There are two ways to tackle this. Both assume that you always insert new rows. In every case, you must insert a timestamp (created) which tells you when a row was "modified".
The first approach uses a number to count how many instances you already have. The primary key is the object key plus the version number. The problem with this approach seems to be that you'll need a select max(version) to make a modification. In practice, this is rarely an issue since for all updates from the app, you must first load the current version of the person, modify it (and increment the version) and then insert the new row. So the real problem is that this design makes it hard to run updates in the database (for example, assign a property to many users).
The next approach uses links in the database. Instead of a composite key, you give each object a new key and you have a replacedBy field which contains the key of the next version. This approach makes it simple to find the current version (... where replacedBy is NULL). Updates are a problem, though, since you must insert a new row and update an existing one.
To solve this, you can add a back pointer (previousVersion). This way, you can insert the new rows and then use the back pointer to update the previous version.
Here is a (somewhat dated) survey of the literature on temporal databases: http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.91.6988&rep=rep1&type=pdf
I would recommend spending a good while sitting down with those references and/or Google Scholar to try to find some good techniques that fit your data model. Good luck!