I am implementing a keypoint detection algorithm to recognize biomedical landmarks on images. I only have one type of landmark to detect. But in a single image, 1-10 of these landmarks can be present. I'm wondering what's the best way to organize the ground truth to maximize learning.
I considered creating 10 landmark coordinates per image and associate them with flags that are either 0 (not present) or 1 (present). But this doesn't seem ideal. Since the multiple landmarks in a single picture are actually the same type of biomedical element, the neural network shouldn't be trying to learn them as separate entities.
Any suggestions?
One landmark that can appear everywhere sounds like a typical CNN problem. Your CNN filters should learn which features make up the landmark, but they don't care where it appears. That would be the responsibility of the next layers. Hence, for training the CNN layers you can use a monochrome image as the target: 1 is "landmark at this pixel", 0 if not.
The next layers are basically processing the CNN-detected features. To train those, your ground truth should be basically the desired outcome. Do you just need a binary output (count>0)? A somewhat accurate estimate of the count? Coordinates? Orientation? NN's don't care that much what they learn, so just give it in training what it should produce in inference.
I want to retrain the object detector Yolov4 to recognize figures of the board game Ticket to Ride.
While gathering pictures i was searching for an idea to reduce the amount of needed pictures.
I was wondering if more instances of an object/class in a picture means more "training per picture" which leads to "i need less pictures"
Is this correct? If not could you try to explain in simple terms?
On the roboflow page, they say that the YOLOv4 breaks detecting objects into two pieces:
regression to identify object positioning via bounding boxes;
classification to classify the objects into classes.
Regression (analysis) is - in short - a method of analysis that tries to find the data (images in your case) that is relevant. Classification - on the other hand - transforms the ‘interesting’ images from the previous step into a class (which is ’train piece’, ’tracks’, ’station’ or something else that is worth separating from the rest).
Now, to answer your question: “no, you need more pictures.” When taking more pictures, YOLOv4 is using more samples make / test a more accurate classification. Yet, you have to be careful what you want to classify. You do want the algorithm to extract a ’train’ class from an image, but not an ‘ocean’ class for example. To prevent this, make more (different) pictures of the classes you want to have!
Is it possible for the Generator to learn a distribution when noise is a specific input say n images instead of a random noise? For example, there are two categories of images with labels 0 and 1 say 0 for cats and 1 for dogs. Is it possible to learn the generator as we feed it a dog and it will generate a cat image against that dog image?
This query is somehow the same as deblurring images but what if no clear image is given against that blurred image but we are just given with random clear images.
Sure, it is possible. This is called style transfer and there have been a lot of works on that. In a way you learn a mapping function between the manifolds of dogs to the manifolds of cats. A famous work in that direction is the CycleGAN paper (https://arxiv.org/pdf/1703.10593.pdf), which uses a cycle consistent loss to map from one direction to the other and back. This makes the training more stable and the resulting images closer to the initial images.
What are common techniques for finding which parts of images contribute most to image classification via convolutional neural nets?
In general, suppose we have 2d matrices with float values between 0 and 1 as entires. Each matrix is associated with a label (single-label, multi-class) and the goal is to perform classification via (Keras) 2D CNN's.
I'm trying to find methods to extract relevant subsequences of rows/columns that contribute most to classification.
Two examples:
https://github.com/jacobgil/keras-cam
https://github.com/tdeboissiere/VGG16CAM-keras
Other examples/resources with an eye toward Keras would be much appreciated.
Note my datasets are not actual images, so using methods with ImageDataGenerator might not directly apply in this case.
There are many visualization methods. Each of these methods has its strengths and weaknesses.
However, you have to keep in mind that the methods partly visualize different things. Here is a short overview based on this paper.
You can distinguish between three main visualization groups:
Functions (gradients, saliency map): These methods visualize how a change in input space affects the prediction
Signal (deconvolution, Guided BackProp, PatternNet): the signal (reason for a neuron's activation) is visualized. So this visualizes what pattern caused the activation of a particular neuron.
Attribution (LRP, Deep Taylor Decomposition, PatternAttribution): these methods visualize how much a single pixel contributed to the prediction. As a result you get a heatmap highlighting which pixels of the input image most strongly contributed to the classification.
Since you are asking how much a pixel has contributed to the classification, you should use methods of attribution. Nevertheless, the other methods also have their right to exist.
One nice toolbox for visualizing heatmaps is iNNvestigate.
This toolbox contains the following methods:
SmoothGrad
DeConvNet
Guided BackProp
PatternNet
PatternAttribution
Occlusion
Input times Gradient
Integrated Gradients
Deep Taylor
LRP
DeepLift
I working on an application for processing document images (mainly invoices) and basically, I'd like to convert certain regions of interest into an XML-structure and then classify the document based on that data. Currently I am using ImageJ for analyzing the document image and Asprise/tesseract for OCR.
Now I am looking for something to make developing easier. Specifically, I am looking for something to automatically deskew a document image and analyze the document structure (e.g. converting an image into a quadtree structure for easier processing). Although I prefer Java and ImageJ I am interested in any libraries/code/papers regardless of the programming language it's written in.
While the system I am working on should as far as possible process data automatically, the user should oversee the results and, if necessary, correct the classification suggested by the system. Therefore I am interested in using machine learning techniques to achieve more reliable results. When similar documents are processed, e.g. invoices of a specific company, its structure is usually the same. When the user has previously corrected data of documents from a company, these corrections should be considered in the future. I have only limited knowledge of machine learning techniques and would like to know how I could realize my idea.
The following prototype in Mathematica finds the coordinates of blocks of text and performs OCR within each block. You may need to adapt the parameters values to fit the dimensions of your actual images. I do not address the machine learning part of the question; perhaps you would not even need it for this application.
Import the picture, create a binary mask for the printed parts, and enlarge these parts using an horizontal closing (dilation and erosion).
Query for each blob's orientation, cluster the orientations, and determine the overall rotation by averaging the orientations of the largest cluster.
Use the previous angle to straighten the image. At this time OCR is possible, but you would lose the spatial information for the blocks of text, which will make the post-processing much more difficult than it needs to be. Instead, find blobs of text by horizontal closing.
For each connected component, query for the bounding box position and the centroid position. Use the bounding box positions to extract the corresponding image patch and perform OCR on the patch.
At this point, you have a list of strings and their spatial positions. That's not XML yet, but it sounds like a good starting point to be tailored straightforwardly to your needs.
This is the code. Again, the parameters (structuring elements) of the morphological functions may need to change, based on the scale of your actual images; also, if the invoice is too tilted, you may need to "rotate" roughly the structuring elements in order to still achieve good "un-skewing."
img = ColorConvert[Import#"http://www.team-bhp.com/forum/attachments/test-drives-initial-ownership-reports/490952d1296308008-laura-tsi-initial-ownership-experience-img023.jpg", "Grayscale"];
b = ColorNegate#Binarize[img];
mask = Closing[b, BoxMatrix[{2, 20}]]
orientations = ComponentMeasurements[mask, "Orientation"];
angles = FindClusters#orientations[[All, 2]]
\[Theta] = Mean[angles[[1]]]
straight = ColorNegate#Binarize[ImageRotate[img, \[Pi] - \[Theta], Background -> 1]]
TextRecognize[straight]
boxes = Closing[straight, BoxMatrix[{1, 20}]]
comp = MorphologicalComponents[boxes];
measurements = ComponentMeasurements[{comp, straight}, {"BoundingBox", "Centroid"}];
texts = TextRecognize#ImageTrim[straight, #] & /# measurements[[All, 2, 1]];
Cases[Thread[measurements[[All, 2, 2]] -> texts], (_ -> t_) /; StringLength[t] > 0] // TableForm
The paper we use for skew angle detection is: Skew detection and text line position determination in digitized documents by Gatos et. al. The only limitation with this paper is that it can detect skew upto -5 and +5 degrees. After that, we need something to slap the user with a message! :)
In your case, where there are primarily invoice scans, you may beautifully use: Multiresolution Analysis in Extraction of Reference Lines from Documents with Gray Level Background by Tag et. al.
We wrote the code in MATLAB, if you need help let me know!
I worked on a similar project once, and for being a long time user of OpenCV I ended up using it once again. OpenCV is a popular-cross-platform-computer-vision-library that offers programming interfaces for C and C++.
I found an interesting blog that had a post on how to detect the skew angle of a text using OpenCV, and then another on how to deskew.
To retrieve the text of the document and be able to pass a smaller image to tesseract, I suggest taking a look at the bounding box technique.
I don't know if the image acquisition procedure is your responsibility, but if it is you might want to take a look at how to do camera calibration with OpenCV to fix the distortion in the image caused by some camera lenses.