How to convert my Chrome app to extension - google-chrome

I have created a Chrome app, but I found that uploading it to Chrome Web Store is problematic, as they declare it is only compatible with Chrome OS.
There is a tutorial by Google how to move to web applications, but I find it unusable.
I would like to publish it as an extension, so the sensible move I think is using a Chrome extension, not a Chrome app. Still, I am not sure what what's the best next step.
Thanks

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How to pre-install a Google Chrome extension

I have created a browser, which relies on an extension to work properly. I have not yet published the extension to the store and would prefer to avoid doing so. Is there a way for me to automatically install or pre-install an extension, to allow for easy distribution along with the actual browser?

Full Website Within Chrome Application Window

Was wondering if I had a web-application on www.mydomain.com/userportal etc but didn't want this accessable via the browser, but as a chrome application similar to how Google's Hangouts is a seperate window / popup - How easy is it to implement an already built application into one of these windows?
If I understand you correctly, you would like to display your www site as a Chrome App. Chrome apps are all HTML/CSS/JS files hosted on the computer but they can display a webview into a site online. However, Chrome Apps must be 'offline' first. So you must ask for permissions to all online activity.
Ideally you would make separate app hosted as a Chrome App (not link/embedded to a www site) that uses an API to talk to a web-app.
Keep in mind that Google is phasing out Chrome Apps for all platforms except Chrome OS in the near future.

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Is it possible to develop a Chrome Bookmarks manager app that is not a chrome extension, i.e. that runs independently of the chrome browser?

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~/Library/Application Support/Google/Chrome/Default/Bookmarks
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We are pretty like it so far~

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