Payara 5 NP-Exception during deployment: TyrusServletContainerInitializer - exception

With the payara 5.181 full release, deployment fails quite often with the following stack trace. This happens both in Netbeans-environment and with docker container.
After several retries, containing server-restarts, project clean-build, with and without osgi-cache cleanup (full rebuild in docker), but without changing anything in the application or server itself, eventually it will work again. Yet I am not able to reproduce this in a break down predictibile way.
For me, that doesn't seem to be a configuration issue. However, I also couldn't find a filed related payara bug. Does anyone knows a solution to this?
Failing deployment:
INFORMATION: Clustered CDI Event bus initialized
INFORMATION: Using OmniFaces version 3.0
INFORMATION: Initializing Soteria 1.1-b01 for context ''
INFORMATION: Registering WebSocket filter for url pattern /*
SCHWERWIEGEND: Error invoking ServletContainerInitializer org.glassfish.tyrus.servlet.TyrusServletContainerInitializer
java.lang.NullPointerException
at org.glassfish.tyrus.servlet.TyrusServletContainerInitializer.onStartup(TyrusServletContainerInitializer.java:153)
at org.apache.catalina.core.StandardContext.callServletContainerInitializers(StandardContext.java:5825)
at com.sun.enterprise.web.WebModule.callServletContainerInitializers(WebModule.java:695)
at org.apache.catalina.core.StandardContext.start(StandardContext.java:5722)
at com.sun.enterprise.web.WebModule.start(WebModule.java:609)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:956)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:939)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:684)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:2099)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:1745)
at com.sun.enterprise.web.WebApplication.start(WebApplication.java:107)
at org.glassfish.internal.data.EngineRef.start(EngineRef.java:123)
at org.glassfish.internal.data.ModuleInfo.start(ModuleInfo.java:294)
at org.glassfish.internal.data.ApplicationInfo.start(ApplicationInfo.java:357)
at com.sun.enterprise.v3.server.ApplicationLifecycle.initialize(ApplicationLifecycle.java:538)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:514)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:549)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:545)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:544)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:575)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:567)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:566)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1475)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:111)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1857)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1733)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:564)
at com.sun.enterprise.v3.admin.AdminAdapter.onMissingResource(AdminAdapter.java:251)
at org.glassfish.grizzly.http.server.StaticHttpHandlerBase.service(StaticHttpHandlerBase.java:190)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:516)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:213)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:206)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:180)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:242)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:539)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:593)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:573)
at java.lang.Thread.run(Thread.java:748)
SCHWERWIEGEND: Startup of context failed due to previous errors
SCHWERWIEGEND: Exception during cleanup after start failed
org.apache.catalina.LifecycleException: Manager has not yet been started
at org.apache.catalina.session.StandardManager.stop(StandardManager.java:868)
at org.apache.catalina.core.StandardContext.stop(StandardContext.java:5927)
at com.sun.enterprise.web.WebModule.stop(WebModule.java:638)
at org.apache.catalina.core.StandardContext.start(StandardContext.java:5743)
at com.sun.enterprise.web.WebModule.start(WebModule.java:609)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:956)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:939)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:684)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:2099)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:1745)
at com.sun.enterprise.web.WebApplication.start(WebApplication.java:107)
at org.glassfish.internal.data.EngineRef.start(EngineRef.java:123)
at org.glassfish.internal.data.ModuleInfo.start(ModuleInfo.java:294)
at org.glassfish.internal.data.ApplicationInfo.start(ApplicationInfo.java:357)
at com.sun.enterprise.v3.server.ApplicationLifecycle.initialize(ApplicationLifecycle.java:538)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:514)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:549)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:545)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:544)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:575)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:567)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:566)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1475)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:111)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1857)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1733)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:564)
at com.sun.enterprise.v3.admin.AdminAdapter.onMissingResource(AdminAdapter.java:251)
at org.glassfish.grizzly.http.server.StaticHttpHandlerBase.service(StaticHttpHandlerBase.java:190)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:516)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:213)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:206)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:180)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:242)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:539)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:593)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:573)
at java.lang.Thread.run(Thread.java:748)
SCHWERWIEGEND: ContainerBase.addChild: start:
org.apache.catalina.LifecycleException: org.apache.catalina.LifecycleException: java.lang.NullPointerException
at org.apache.catalina.core.StandardContext.start(StandardContext.java:5747)
at com.sun.enterprise.web.WebModule.start(WebModule.java:609)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:956)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:939)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:684)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:2099)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:1745)
at com.sun.enterprise.web.WebApplication.start(WebApplication.java:107)
at org.glassfish.internal.data.EngineRef.start(EngineRef.java:123)
at org.glassfish.internal.data.ModuleInfo.start(ModuleInfo.java:294)
at org.glassfish.internal.data.ApplicationInfo.start(ApplicationInfo.java:357)
at com.sun.enterprise.v3.server.ApplicationLifecycle.initialize(ApplicationLifecycle.java:538)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:514)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:549)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:545)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:544)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:575)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:567)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:566)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1475)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:111)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1857)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1733)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:564)
at com.sun.enterprise.v3.admin.AdminAdapter.onMissingResource(AdminAdapter.java:251)
at org.glassfish.grizzly.http.server.StaticHttpHandlerBase.service(StaticHttpHandlerBase.java:190)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:516)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:213)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:206)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:180)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:242)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:539)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:593)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:573)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.catalina.LifecycleException: java.lang.NullPointerException
at org.apache.catalina.core.StandardContext.callServletContainerInitializers(StandardContext.java:5833)
at com.sun.enterprise.web.WebModule.callServletContainerInitializers(WebModule.java:695)
at org.apache.catalina.core.StandardContext.start(StandardContext.java:5722)
... 48 more
Caused by: java.lang.NullPointerException
at org.glassfish.tyrus.servlet.TyrusServletContainerInitializer.onStartup(TyrusServletContainerInitializer.java:153)
at org.apache.catalina.core.StandardContext.callServletContainerInitializers(StandardContext.java:5825)
... 50 more
WARNUNG: java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: org.apache.catalina.LifecycleException: java.lang.NullPointerException
java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: org.apache.catalina.LifecycleException: java.lang.NullPointerException
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:960)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:939)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:684)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:2099)
at com.sun.enterprise.web.WebContainer.loadWebModule(WebContainer.java:1745)
at com.sun.enterprise.web.WebApplication.start(WebApplication.java:107)
at org.glassfish.internal.data.EngineRef.start(EngineRef.java:123)
at org.glassfish.internal.data.ModuleInfo.start(ModuleInfo.java:294)
at org.glassfish.internal.data.ApplicationInfo.start(ApplicationInfo.java:357)
at com.sun.enterprise.v3.server.ApplicationLifecycle.initialize(ApplicationLifecycle.java:538)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:514)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:549)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:545)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:544)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:575)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:567)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:566)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1475)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:111)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1857)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1733)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:564)
at com.sun.enterprise.v3.admin.AdminAdapter.onMissingResource(AdminAdapter.java:251)
at org.glassfish.grizzly.http.server.StaticHttpHandlerBase.service(StaticHttpHandlerBase.java:190)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:516)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:213)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:206)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:180)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:242)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:539)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:593)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:573)
at java.lang.Thread.run(Thread.java:748)
SCHWERWIEGEND: Exception while invoking class com.sun.enterprise.web.WebApplication start method
java.lang.Exception: java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: org.apache.catalina.LifecycleException: java.lang.NullPointerException
at com.sun.enterprise.web.WebApplication.start(WebApplication.java:136)
at org.glassfish.internal.data.EngineRef.start(EngineRef.java:123)
at org.glassfish.internal.data.ModuleInfo.start(ModuleInfo.java:294)
at org.glassfish.internal.data.ApplicationInfo.start(ApplicationInfo.java:357)
at com.sun.enterprise.v3.server.ApplicationLifecycle.initialize(ApplicationLifecycle.java:538)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:514)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:549)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:545)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:544)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:575)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:567)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:566)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1475)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:111)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1857)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1733)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:564)
at com.sun.enterprise.v3.admin.AdminAdapter.onMissingResource(AdminAdapter.java:251)
at org.glassfish.grizzly.http.server.StaticHttpHandlerBase.service(StaticHttpHandlerBase.java:190)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:516)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:213)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:206)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:180)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:242)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:539)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:593)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:573)
at java.lang.Thread.run(Thread.java:748)
SCHWERWIEGEND: Exception during lifecycle processing
java.lang.Exception: java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: org.apache.catalina.LifecycleException: java.lang.NullPointerException
at com.sun.enterprise.web.WebApplication.start(WebApplication.java:136)
at org.glassfish.internal.data.EngineRef.start(EngineRef.java:123)
at org.glassfish.internal.data.ModuleInfo.start(ModuleInfo.java:294)
...REMOVED PART OF THE LOG DUE TO CHARACTER SIZE LIMITATION...
at java.lang.Thread.run(Thread.java:748)
SCHWERWIEGEND: Exception while loading the app
SCHWERWIEGEND: Undeployment failed for context
SCHWERWIEGEND: Exception while loading the app : java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: org.apache.catalina.LifecycleException: java.lang.NullPointerException
Working after some retries, exactly the same application and server (extract):
INFORMATION: Running Payara Version: Payara Server 5.181 #badassfish (build 213)
...
INFORMATION: Clustered CDI Event bus initialized
INFORMATION: Registering WebSocket filter for url pattern /*
INFORMATION: Using OmniFaces version 3.0
INFORMATION: Initializing Soteria 1.1-b01 for context ''
INFORMATION: Mojarra 2.4.0-m01.payara-p5 für Kontext '' wird initialisiert.
INFORMATION: This application is running on BootsFaces1.2.0-
INFORMATION: Running on PrimeFaces 6.2
INFORMATION: Loading application [Staar] at [/]
Update
I might have found a somehow related bug at https://github.com/javaee/glassfish/issues/21508, considering the websocket relation and the weird "50% chances" to be able to run it. The mentioned workaround didn't work for me.
The problem is gone when not making use of the JSF 2.3 f:websocket component and commenting out the according settings javax.faces.ENABLE_CDI_RESOLVER_CHAIN and javax.faces.ENABLE_WEBSOCKET_ENDPOINT in the web.xml.
As soon as I find time a will try to provide a minimal example.

I'm not fully sure how to solve this, but the problem is directly caused by there already being a filter in the application called "WebSocket filter".
This may be caused by the initialiser running twice, which indeed seems to happen as "Registering WebSocket filter for url pattern /"* is already printed before the exception. Printing that would be indicative of the first registration being done, so the second one fails.
You may want to check if there isn't a Tyrus implementation present in the war file. There shouldn't be one, as it's provided by Payara.

I've run into the same issue. This seems to be a payara bug, but there is an easy workaround by using OmniFaces. All you have to do (apart from including OmniFaces in your project) is change your web.xml from:
<context-param>
<param-name>javax.faces.ENABLE_WEBSOCKET_ENDPOINT</param-name>
<param-value>true</param-value>
</context-param>
to
<context-param>
<param-name>org.omnifaces.SOCKET_ENDPOINT_ENABLED</param-name>
<param-value>true</param-value>
</context-param>
Then change your jsf tags from
<f:websocket channel="XYZ" ... />
to
<o:socket channel="XYZ" ... />
and lastly change the import of #Push and #PushContext from
import javax.faces.push.Push;
import javax.faces.push.PushContext;
to
import org.omnifaces.cdi.Push;
import org.omnifaces.cdi.PushContext;
So instead of using Tyrus (as provided by Payara) you can simply use the functionality provided by OmniFaces. That's because the JSR 356 implementation is largely based on the OmniFaces one. Hope this helps!

Related

GlassFish 4, JPA 2.0 - EclipseLink, MySQL, Java EE project works fine locally but error in remote deploy

This project runs fine locally, the trouble is when it's deployed in a VPS remotely, actually it can be deployed but an exception is logged (in GlassFish server.log) when trying to log-In to the application.
As you will find in the below logs it seems like a table is not founded, how ever it's in fact created at the beginning through a EJB and some data is aded as well (I can see it in the DB). I haven't been able to find the trouble. It's kind of strange since all the configuration is the same as the local environment, don't know if it could be the version of the GlassFish or something like that.
[2017-10-05T18:07:29.495-0400] [glassfish 4.1] [WARNING] [] [org.eclipse.persistence.default] [tid: _ThreadID=42 _ThreadName=admin-listener(3)] [timeMillis: 1507241249495] [levelValue: 900] [[
java.lang.NullPointerException
at org.eclipse.persistence.platform.server.ServerPlatformUtils.createServerPlatform(ServerPlatformUtils.java:99)
at org.eclipse.persistence.sessions.factories.SessionManager.init(SessionManager.java:77)
at org.eclipse.persistence.sessions.factories.SessionManager.<clinit>(SessionManager.java:71)
at org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.addSessionToGlobalSessionManager(EntityManagerSetupImpl.java:907)
at org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.initSession(EntityManagerSetupImpl.java:2671)
at org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.deploy(EntityManagerSetupImpl.java:675)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.getAbstractSession(EntityManagerFactoryDelegate.java:205)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.getDatabaseSession(EntityManagerFactoryDelegate.java:183)
at org.eclipse.persistence.internal.jpa.EntityManagerFactoryImpl.getDatabaseSession(EntityManagerFactoryImpl.java:528)
at org.eclipse.persistence.jpa.PersistenceProvider.createContainerEntityManagerFactoryImpl(PersistenceProvider.java:385)
at org.eclipse.persistence.jpa.PersistenceProvider.createContainerEntityManagerFactory(PersistenceProvider.java:313)
at org.glassfish.persistence.jpa.PersistenceUnitLoader.loadPU(PersistenceUnitLoader.java:199)
at org.glassfish.persistence.jpa.PersistenceUnitLoader.<init>(PersistenceUnitLoader.java:107)
at org.glassfish.persistence.jpa.JPADeployer$1.visitPUD(JPADeployer.java:223)
at org.glassfish.persistence.jpa.JPADeployer$PersistenceUnitDescriptorIterator.iteratePUDs(JPADeployer.java:510)
at org.glassfish.persistence.jpa.JPADeployer.createEMFs(JPADeployer.java:230)
at org.glassfish.persistence.jpa.JPADeployer.prepare(JPADeployer.java:168)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:925)
at org.glassfish.javaee.full.deployment.EarDeployer.prepareBundle(EarDeployer.java:309)
at org.glassfish.javaee.full.deployment.EarDeployer.access$200(EarDeployer.java:88)
at org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:155)
at org.glassfish.javaee.full.deployment.EarDeployer$1.doBundle(EarDeployer.java:152)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnBundles(EarDeployer.java:232)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnAllTypedBundles(EarDeployer.java:241)
at org.glassfish.javaee.full.deployment.EarDeployer.doOnAllBundles(EarDeployer.java:267)
at org.glassfish.javaee.full.deployment.EarDeployer.prepare(EarDeployer.java:152)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepareModule(ApplicationLifecycle.java:925)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:434)
at com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:539)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:535)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:534)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:565)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:557)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:556)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1464)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:109)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1846)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1722)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:253)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:231)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:275)
at org.glassfish.admin.rest.resources.TemplateListOfResource.createResource(TemplateListOfResource.java:133)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:144)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:161)
at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:160)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:99)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:389)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:347)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:102)
at org.glassfish.jersey.server.ServerRuntime$2.run(ServerRuntime.java:309)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)
at org.glassfish.jersey.internal.Errors.process(Errors.java:315)
at org.glassfish.jersey.internal.Errors.process(Errors.java:297)
at org.glassfish.jersey.internal.Errors.process(Errors.java:267)
at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:317)
at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:292)
at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1139)
at org.glassfish.jersey.grizzly2.httpserver.GrizzlyHttpContainer.service(GrizzlyHttpContainer.java:375)
at org.glassfish.admin.rest.adapter.RestAdapter$2.service(RestAdapter.java:316)
at org.glassfish.admin.rest.adapter.RestAdapter.service(RestAdapter.java:179)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:206)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:180)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:283)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:200)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:132)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:111)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.portunif.PUFilter.handleRead(PUFilter.java:231)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:283)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:200)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:132)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:111)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.portunif.PUFilter.handleRead(PUFilter.java:231)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:283)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:200)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:132)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:111)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:536)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:591)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:571)
at java.lang.Thread.run(Thread.java:748)
]]
[2017-10-05T18:07:29.539-0400] [glassfish 4.1] [INFO] [] [org.eclipse.persistence.session./file:/opt/appServers/glassfish4/glassfish/domains/domain1/applications/GlassFish_medApp_02/GlassFish_medApp_02-ejb_jar/_GlassFish_medApp_02-ejbPU] [tid: _ThreadID=42 _ThreadName=admin-listener(3)] [timeMillis: 1507241249539] [levelValue: 800] [[
EclipseLink, version: Eclipse Persistence Services - 2.6.1.v20150605-31e8258]]
[2017-10-05T18:07:30.309-0400] [glassfish 4.1] [INFO] [] [org.eclipse.persistence.session./file:/opt/appServers/glassfish4/glassfish/domains/domain1/applications/GlassFish_medApp_02/GlassFish_medApp_02-ejb_jar/_GlassFish_medApp_02-ejbPU.connection] [tid: _ThreadID=42 _ThreadName=admin-listener(3)] [timeMillis: 1507241250309] [levelValue: 800] [[
/file:/opt/appServers/glassfish4/glassfish/domains/domain1/applications/GlassFish_medApp_02/GlassFish_medApp_02-ejb_jar/_GlassFish_medApp_02-ejbPU login successful]]
[2017-10-05T18:07:32.337-0400] [glassfish 4.1] [INFO] [AS-EJB-00054] [javax.enterprise.ejb.container] [tid: _ThreadID=42 _ThreadName=admin-listener(3)] [timeMillis: 1507241252337] [levelValue: 800] [[
Portable JNDI names for EJB InterpretacionFacade: [java:global/GlassFish_medApp_02/GlassFish_medApp_02-ejb/InterpretacionFacade, java:global/GlassFish_medApp_02/GlassFish_medApp_02-ejb/InterpretacionFacade!datalayer.ejb.DAOsFacade.InterpretacionFacade]]]
[2017-10-05T18:07:32.539-0400] [glassfish 4.1] [INFO] [AS-EJB-00054] [javax.enterprise.ejb.container] [tid: _ThreadID=42 _ThreadName=admin-listener(3)] [timeMillis: 1507241252539] [levelValue: 800] [[
Portable JNDI names for EJB MediaFileFacade: [java:global/GlassFish_medApp_02/GlassFish_medApp_02-ejb/MediaFileFacade!datalayer.ejb.DAOsFacade.MediaFileFacade, java:global/GlassFish_medApp_02/GlassFish_medApp_02-ejb/MediaFileFacade]]]
[2017-10-05T18:09:24.223-0400] [glassfish 4.1] [WARNING] [] [org.eclipse.persistence.session./file:/opt/appServers/glassfish4/glassfish/domains/domain1/applications/GlassFish_medApp_02/GlassFish_medApp_02-ejb_jar/_GlassFish_medApp_02-ejbPU] [tid: _ThreadID=28 _ThreadName=http-listener-1(3)] [timeMillis: 1507241364223] [levelValue: 900] [[
Local Exception Stack:
Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.6.1.v20150605-31e8258): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table 'medapp02.usuario' doesn't exist
Error Code: 1146
Call: SELECT ex.ID from usuario u join administrador ad on u.ID = ad.ID join ADMINISTRADOR_EXPEDIENTE ad_ex on ad.ID = ad_ex.ADMINISTRADOR_ID join expediente ex on ad_ex.EXPEDIENTES_ID = ex.ID where u.ID = ?
bind => [1 parameter bound]
Query: DataReadQuery(sql="SELECT ex.ID from usuario u join administrador ad on u.ID = ad.ID join ADMINISTRADOR_EXPEDIENTE ad_ex on ad.ID = ad_ex.ADMINISTRADOR_ID join expediente ex on ad_ex.EXPEDIENTES_ID = ex.ID where u.ID = ?")
at org.eclipse.persistence.exceptions.DatabaseException.sqlException(DatabaseException.java:340)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.basicExecuteCall(DatabaseAccessor.java:684)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeCall(DatabaseAccessor.java:560)
at org.eclipse.persistence.internal.sessions.AbstractSession.basicExecuteCall(AbstractSession.java:2055)
at org.eclipse.persistence.sessions.server.ClientSession.executeCall(ClientSession.java:306)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeCall(DatasourceCallQueryMechanism.java:242)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeCall(DatasourceCallQueryMechanism.java:228)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeSelectCall(DatasourceCallQueryMechanism.java:299)
at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeSelect(DatasourceCallQueryMechanism.java:281)
at org.eclipse.persistence.queries.DataReadQuery.executeNonCursor(DataReadQuery.java:197)
at org.eclipse.persistence.queries.DataReadQuery.executeDatabaseQuery(DataReadQuery.java:152)
at org.eclipse.persistence.queries.DatabaseQuery.execute(DatabaseQuery.java:904)
at org.eclipse.persistence.queries.DataReadQuery.execute(DataReadQuery.java:137)
at org.eclipse.persistence.queries.DatabaseQuery.executeInUnitOfWork(DatabaseQuery.java:803)
at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.internalExecuteQuery(UnitOfWorkImpl.java:2896)
at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1857)
at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1839)
at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1804)
at org.eclipse.persistence.internal.jpa.QueryImpl.executeReadQuery(QueryImpl.java:258)
at org.eclipse.persistence.internal.jpa.QueryImpl.getResultList(QueryImpl.java:473)
at datalayer.ejb.DAOsFacade.ExpedienteFacade.getExpedientesListByAdminId(ExpedienteFacade.java:69)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)
at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)
at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786)
at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:64)
at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369)
at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758)
at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88)
at com.sun.proxy.$Proxy249.getExpedientesListByAdminId(Unknown Source)
at datalayer.ejb.DAOsFacade.__EJB31_Generated__ExpedienteFacade__Intf____Bean__.getExpedientesListByAdminId(Unknown Source)
at controller.jsf.expedientes.ExpBean_display.retriveExpedientes_sessionByAdmin(ExpBean_display.java:65)
at controller.jsf.expedientes.ExpBean_display$Proxy$_$$_WeldClientProxy.retriveExpedientes_sessionByAdmin(Unknown Source)
at controller.jsf.logIn.LogInBean.verificaUserAdmin(LogInBean.java:83)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at javax.el.ELUtil.invokeMethod(ELUtil.java:332)
at javax.el.BeanELResolver.invoke(BeanELResolver.java:537)
at javax.el.CompositeELResolver.invoke(CompositeELResolver.java:256)
at com.sun.el.parser.AstValue.invoke(AstValue.java:283)
at com.sun.el.MethodExpressionImpl.invoke(MethodExpressionImpl.java:304)
at org.jboss.weld.util.el.ForwardingMethodExpression.invoke(ForwardingMethodExpression.java:40)
at org.jboss.weld.el.WeldMethodExpression.invoke(WeldMethodExpression.java:50)
at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:105)
at javax.faces.component.MethodBindingMethodExpressionAdapter.invoke(MethodBindingMethodExpressionAdapter.java:87)
at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:102)
at javax.faces.component.UICommand.broadcast(UICommand.java:315)
at javax.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:790)
at javax.faces.component.UIViewRoot.processApplication(UIViewRoot.java:1282)
at com.sun.faces.lifecycle.InvokeApplicationPhase.execute(InvokeApplicationPhase.java:81)
at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:101)
at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:198)
at javax.faces.webapp.FacesServlet.service(FacesServlet.java:658)
at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1682)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:344)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
at org.primefaces.webapp.filter.FileUploadFilter.doFilter(FileUploadFilter.java:70)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:316)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:734)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:673)
at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:174)
at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:416)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:283)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:206)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:180)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:283)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:200)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:132)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:111)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:536)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:591)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:571)
at java.lang.Thread.run(Thread.java:748)
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table 'medapp02.usuario' doesn't exist
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:404)
at com.mysql.jdbc.Util.getInstance(Util.java:387)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:939)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3878)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3814)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2478)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2625)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2551)
at com.mysql.jdbc.PreparedStatement.executeInternal(PreparedStatement.java:1861)
at com.mysql.jdbc.PreparedStatement.executeQuery(PreparedStatement.java:1962)
at com.sun.gjc.spi.jdbc40.PreparedStatementWrapper40.executeQuery(PreparedStatementWrapper40.java:642)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeSelect(DatabaseAccessor.java:1009)
at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.basicExecuteCall(DatabaseAccessor.java:644)
... 110 more
Do someone has ever faced something like this before? Thanks for your help!!!
By the way the persistence.xml file is the following:
<?xml version="1.0" encoding="UTF-8"?>
<persistence version="2.1" xmlns="http://xmlns.jcp.org/xml/ns/persistence"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://xmlns.jcp.org/xml/ns/persistence
http://xmlns.jcp.org/xml/ns/persistence/persistence_2_1.xsd">
<persistence-unit name="GlassFish_medApp_02-ejbPU" transaction-type="JTA">
<jta-data-source>jdbc/mysql_medapp02</jta-data-source>
<exclude-unlisted-classes>false</exclude-unlisted-classes>
<shared-cache-mode>NONE</shared-cache-mode>
<properties>
<property name="javax.persistence.schema-generation.database.action" value="drop-and-create"/>
</properties>
</persistence-unit>
</persistence>

JPA Connection to MySQL Throws "TOO MANY CONNECTION" Error

i tries to connect to mysql database through the Application-Server Glassfish and JPA.
My persistence.xml looks like this:
<?xml version="1.0" encoding="UTF-8"?>
<persistence version="2.1"
xmlns="http://xmlns.jcp.org/xml/ns/persistence" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://xmlns.jcp.org/xml/ns/persistence http://xmlns.jcp.org/xml/ns/persistence/persistence_2_1.xsd">
<persistence-unit name="WEBSERVIE-EJB"
transaction-type="JTA">
<jta-data-source>AVS_TWO</jta-data-source>
<properties>
<property name="eclipselink.ddl-generation" value="create-or-extend-tables" />
</properties>
</persistence-unit>
</persistence>
But if i trie that, the console of eclipse gives me the following error:
Exception : Connection could not be allocated because: Data source
rejected establishment of connection, message from server: "Too many
connections"
Exception [EclipseLink-4019] (Eclipse Persistence Services -
2.5.0.v20130507-3faac2b): org.eclipse.persistence.exceptions.DatabaseException Exception
Description: Error while obtaining information about the database.
Refer to the nested exception for more details. at
org.eclipse.persistence.exceptions.DatabaseException.errorRetrieveDbMetadataThroughJDBCConnection(DatabaseException.java:368)
at
org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.setOrDetectDatasource(DatabaseSessionImpl.java:225)
at
org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.loginAndDetectDatasource(DatabaseSessionImpl.java:734)
at
org.eclipse.persistence.internal.jpa.EntityManagerFactoryProvider.login(EntityManagerFactoryProvider.java:239)
at
org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.deploy(EntityManagerSetupImpl.java:681)
at
org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.getAbstractSession(EntityManagerFactoryDelegate.java:204)
at
org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.createEntityManagerImpl(EntityManagerFactoryDelegate.java:304)
at
org.eclipse.persistence.internal.jpa.EntityManagerFactoryImpl.createEntityManagerImpl(EntityManagerFactoryImpl.java:336)
at
org.eclipse.persistence.internal.jpa.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:302)
at
org.glassfish.persistence.jpa.JPADeployer$2.visitPUD(JPADeployer.java:451)
at
org.glassfish.persistence.jpa.JPADeployer$PersistenceUnitDescriptorIterator.iteratePUDs(JPADeployer.java:510)
at
org.glassfish.persistence.jpa.JPADeployer.iterateInitializedPUsAtApplicationPrepare(JPADeployer.java:492)
at
org.glassfish.persistence.jpa.JPADeployer.event(JPADeployer.java:395)
at org.glassfish.kernel.event.EventsImpl.send(EventsImpl.java:131)
at
com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:484)
at
com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219)
at
org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:527)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:523)
at java.security.AccessController.doPrivileged(Native Method) at
javax.security.auth.Subject.doAs(Subject.java:360) at
com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:522)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:546)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1423)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1500(CommandRunnerImpl.java:108)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1762)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1674)
at
com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:534)
at
com.sun.enterprise.v3.admin.AdminAdapter.onMissingResource(AdminAdapter.java:224)
at
org.glassfish.grizzly.http.server.StaticHttpHandler.service(StaticHttpHandler.java:297)
at
com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:246)
at
org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:191)
at
org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:168)
at
org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:189)
at
org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at
org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:288)
at
org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:206)
at
org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:136)
at
org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:114)
at
org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at
org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:838)
at
org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:113)
at
org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:115)
at
org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:55)
at
org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:135)
at
org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:564)
at
org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:544)
at java.lang.Thread.run(Thread.java:745) Caused by:
com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException:
No operations allowed after connection closed. at
sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:404) at
com.mysql.jdbc.Util.getInstance(Util.java:387) at
com.mysql.jdbc.SQLError.createSQLException(SQLError.java:917) at
com.mysql.jdbc.SQLError.createSQLException(SQLError.java:896) at
com.mysql.jdbc.SQLError.createSQLException(SQLError.java:885) at
com.mysql.jdbc.SQLError.createSQLException(SQLError.java:860) at
com.mysql.jdbc.ConnectionImpl.throwConnectionClosedException(ConnectionImpl.java:1246)
at
com.mysql.jdbc.ConnectionImpl.checkClosed(ConnectionImpl.java:1241)
at
com.mysql.jdbc.ConnectionImpl.getMetaData(ConnectionImpl.java:2946)
at
com.mysql.jdbc.ConnectionImpl.getMetaData(ConnectionImpl.java:2941)
at
com.sun.gjc.spi.base.ConnectionHolder.getMetaData(ConnectionHolder.java:357)
at
com.sun.gjc.spi.jdbc40.ConnectionWrapper40.getMetaData(ConnectionWrapper40.java:114)
at
org.eclipse.persistence.internal.sessions.DatabaseSessionImpl.setOrDetectDatasource(DatabaseSessionImpl.java:209)
... 46 more Caused by:
com.mysql.jdbc.exceptions.jdbc4.CommunicationsException:
Communications link failure The last packet successfully received from
the server was 26.046 milliseconds ago. The last packet sent
successfully to the server was 0 milliseconds ago. at
sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:404) at
com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:988)
at com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO.java:3552) at
com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO.java:3452) at
com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3893) at
com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2526) at
com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2673) at
com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2545) at
com.mysql.jdbc.ConnectionImpl.setSessionMaxRows(ConnectionImpl.java:5432)
at
com.mysql.jdbc.PreparedStatement.executeQuery(PreparedStatement.java:1960)
at
com.sun.gjc.spi.jdbc40.PreparedStatementWrapper40.executeQuery(PreparedStatementWrapper40.java:642)
at
org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeSelect(DatabaseAccessor.java:1002)
at
org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.basicExecuteCall(DatabaseAccessor.java:641)
at
org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeCall(DatabaseAccessor.java:558)
at
org.eclipse.persistence.internal.sessions.AbstractSession.basicExecuteCall(AbstractSession.java:1995)
at
org.eclipse.persistence.sessions.server.ServerSession.executeCall(ServerSession.java:570)
at
org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeCall(DatasourceCallQueryMechanism.java:242)
at
org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeCall(DatasourceCallQueryMechanism.java:228)
at
org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeSelectCall(DatasourceCallQueryMechanism.java:299)
at
org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeSelect(DatasourceCallQueryMechanism.java:281)
at
org.eclipse.persistence.queries.DataReadQuery.executeNonCursor(DataReadQuery.java:197)
at
org.eclipse.persistence.queries.DataReadQuery.executeDatabaseQuery(DataReadQuery.java:152)
at
org.eclipse.persistence.queries.DatabaseQuery.execute(DatabaseQuery.java:899)
at
org.eclipse.persistence.queries.DataReadQuery.execute(DataReadQuery.java:137)
at
org.eclipse.persistence.internal.sessions.AbstractSession.internalExecuteQuery(AbstractSession.java:3207)
at
org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1797)
at
org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1779)
at
org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1730)
at
org.eclipse.persistence.tools.schemaframework.SchemaManager.checkTableExists(SchemaManager.java:477)
at
org.eclipse.persistence.tools.schemaframework.TableCreator.extendTables(TableCreator.java:431)
at
org.eclipse.persistence.tools.schemaframework.TableCreator.extendTablesAndConstraints(TableCreator.java:411)
at
org.eclipse.persistence.tools.schemaframework.TableCreator.extendTables(TableCreator.java:402)
at
org.eclipse.persistence.tools.schemaframework.SchemaManager.extendDefaultTables(SchemaManager.java:1189)
at
org.eclipse.persistence.internal.jpa.EntityManagerFactoryProvider.generateDefaultTables(EntityManagerFactoryProvider.java:108)
at
org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.writeDDLToDatabase(EntityManagerSetupImpl.java:3937)
at
org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.writeDDL(EntityManagerSetupImpl.java:3865)
at
org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.writeDDL(EntityManagerSetupImpl.java:3765)
at
org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.deploy(EntityManagerSetupImpl.java:724)
... 43 more Caused by: java.net.SocketException: Software caused
connection abort: recv failed at
java.net.SocketInputStream.socketRead0(Native Method) at
java.net.SocketInputStream.socketRead(SocketInputStream.java:116) at
java.net.SocketInputStream.read(SocketInputStream.java:170) at
java.net.SocketInputStream.read(SocketInputStream.java:141) at
com.mysql.jdbc.util.ReadAheadInputStream.fill(ReadAheadInputStream.java:101)
at
com.mysql.jdbc.util.ReadAheadInputStream.readFromUnderlyingStreamIfNecessary(ReadAheadInputStream.java:144)
at
com.mysql.jdbc.util.ReadAheadInputStream.read(ReadAheadInputStream.java:174)
at com.mysql.jdbc.MysqlIO.readFully(MysqlIO.java:3001) at
com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO.java:3462) ... 78
more
2016-08-03T13:09:47.479+0200|Schwerwiegend: Exception while deploying
the app [WEB] 2016-08-03T13:09:47.479+0200|Schwerwiegend: Exception
during lifecycle processing
org.glassfish.deployment.common.DeploymentException: Exception
[EclipseLink-4019] (Eclipse Persistence Services -
2.5.0.v20130507-3faac2b): org.eclipse.persistence.exceptions.DatabaseException Exception
Description: Error while obtaining information about the database.
Refer to the nested exception for more details. at
org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl.deploy(EntityManagerSetupImpl.java:762)
at
org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.getAbstractSession(EntityManagerFactoryDelegate.java:204)
at
org.eclipse.persistence.internal.jpa.EntityManagerFactoryDelegate.createEntityManagerImpl(EntityManagerFactoryDelegate.java:304)
at
org.eclipse.persistence.internal.jpa.EntityManagerFactoryImpl.createEntityManagerImpl(EntityManagerFactoryImpl.java:336)
at
org.eclipse.persistence.internal.jpa.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:302)
at
org.glassfish.persistence.jpa.JPADeployer$2.visitPUD(JPADeployer.java:451)
at
org.glassfish.persistence.jpa.JPADeployer$PersistenceUnitDescriptorIterator.iteratePUDs(JPADeployer.java:510)
at
org.glassfish.persistence.jpa.JPADeployer.iterateInitializedPUsAtApplicationPrepare(JPADeployer.java:492)
at
org.glassfish.persistence.jpa.JPADeployer.event(JPADeployer.java:395)
at org.glassfish.kernel.event.EventsImpl.send(EventsImpl.java:131)
at
com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:484)
at
com.sun.enterprise.v3.server.ApplicationLifecycle.deploy(ApplicationLifecycle.java:219)
at
org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:491)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:527)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:523)
at java.security.AccessController.doPrivileged(Native Method) at
javax.security.auth.Subject.doAs(Subject.java:360) at
com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:522)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:546)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1423)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1500(CommandRunnerImpl.java:108)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1762)
at
com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1674)
at
com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:534)
at
com.sun.enterprise.v3.admin.AdminAdapter.onMissingResource(AdminAdapter.java:224)
at
org.glassfish.grizzly.http.server.StaticHttpHandler.service(StaticHttpHandler.java:297)
at
com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:246)
at
org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:191)
at
org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:168)
at
org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:189)
at
org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at
org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:288)
at
org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:206)
at
org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:136)
at
org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:114)
at
org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at
org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:838)
at
org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:113)
at
org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:115)
at
org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:55)
at
org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:135)
at
org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:564)
at
org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:544)
at java.lang.Thread.run(Thread.java:745)
The "max_connections" in mysql is set to 600.
So that be enough.
Whats the problem?
Have you tried to use connection pool?
For eclipse link, you can take a look at this link
I connect to glassfish with JTA. So i have configure a JDBC Connection Pool in Glassfish. If i trigger the 'Ping' Button in glassfish for testing the connection, it works.
https://dev.mysql.com/doc/refman/5.5/en/too-many-connections.html
B.5.2.7 Too many connections
If you get a Too many connections error when you try to connect to the mysqld server, this means that all available connections are in use by other clients.
The number of connections permitted is controlled by the max_connections system variable. The default value is 151 to improve performance when MySQL is used with the Apache Web server. (Previously, the default was 100.) If you need to support more connections, you should set a larger value for this variable.

Why can't I ping my database from JDBC Connection Pool?

I've been following this link to set up a MySql connection pool for glassfish server (located on a Debian server machine).
When trying to ping the database (located on a CentOS server machine), I get the following error from glassfish server:
Ping Connection Pool failed for MySqlTrace. Class name is wrong or classpath is not set for : com.mysql.jdbc.jdbc2.optional.MysqlDataSource Please check the server.log for more details.
I should stress that I am accessing the DB remotely (from my Windows laptop) with a workbench client with no problem what so ever and with the same credentials (I quadruple checked!).
I'm also posting the domain1/logs/server.log
[2015-12-09T09:39:58.825+0000] [glassfish 4.0] [SEVERE] [jdbc.exc_cnfe_ds] [javax.enterprise.resource.resourceadapter.com.sun.gjc.util] [tid: _ThreadID=101 _ThreadName=admin-listener(12)] [timeMillis: 1449653998825] [levelValue: 1000] [[
RAR5099 : Wrong class name or classpath for Datasource Object
java.lang.ClassNotFoundException: com.mysql.jdbc.jdbc2.optional.MysqlDataSource
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:348)
at com.sun.gjc.common.DataSourceObjectBuilder.getDataSourceObject(DataSourceObjectBuilder.java:285)
at com.sun.gjc.common.DataSourceObjectBuilder.constructDataSourceObject(DataSourceObjectBuilder.java:114)
at com.sun.gjc.spi.ManagedConnectionFactoryImpl.getDataSource(ManagedConnectionFactoryImpl.java:1300)
at com.sun.gjc.spi.DSManagedConnectionFactory.getDataSource(DSManagedConnectionFactory.java:163)
at com.sun.gjc.spi.DSManagedConnectionFactory.createManagedConnection(DSManagedConnectionFactory.java:102)
at com.sun.enterprise.connectors.service.ConnectorConnectionPoolAdminServiceImpl.getUnpooledConnection(ConnectorConnectionPoolAdminServiceImpl.java:696)
at com.sun.enterprise.connectors.service.ConnectorConnectionPoolAdminServiceImpl.testConnectionPool(ConnectorConnectionPoolAdminServiceImpl.java:425)
at com.sun.enterprise.connectors.ConnectorRuntime.pingConnectionPool(ConnectorRuntime.java:1162)
at org.glassfish.connectors.admin.cli.PingConnectionPool.execute(PingConnectionPool.java:143)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:527)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:523)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:522)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:546)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1423)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1500(CommandRunnerImpl.java:108)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1762)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1674)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:235)
at org.glassfish.admin.rest.resources.TemplateExecCommand.executeCommandLegacyFormat(TemplateExecCommand.java:161)
at org.glassfish.admin.rest.resources.TemplateCommandGetResource.processGetLegacyFormat(TemplateCommandGetResource.java:75)
at sun.reflect.GeneratedMethodAccessor148.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:125)
at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:152)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:91)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:346)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:341)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:101)
at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:224)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)
at org.glassfish.jersey.internal.Errors.process(Errors.java:315)
at org.glassfish.jersey.internal.Errors.process(Errors.java:297)
at org.glassfish.jersey.internal.Errors.process(Errors.java:267)
at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:317)
at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:198)
at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:946)
at org.glassfish.jersey.grizzly2.httpserver.GrizzlyHttpContainer.service(GrizzlyHttpContainer.java:331)
at org.glassfish.admin.rest.adapter.RestAdapter$2.service(RestAdapter.java:318)
at org.glassfish.admin.rest.adapter.RestAdapter.service(RestAdapter.java:181)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:246)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:191)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:168)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:189)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:288)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:206)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:136)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:114)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.portunif.PUFilter.handleRead(PUFilter.java:231)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:288)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:206)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:136)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:114)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.portunif.PUFilter.handleRead(PUFilter.java:231)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:288)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:206)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:136)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:114)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:838)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:113)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:115)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:55)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:135)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:564)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:544)
at java.lang.Thread.run(Thread.java:745)
]]
[2015-12-09T09:39:58.829+0000] [glassfish 4.0] [WARNING] [test.connection.pool.failed] [javax.enterprise.resource.resourceadapter.com.sun.enterprise.connectors.service] [tid: _ThreadID=101 _ThreadName=admin-listener(12)] [timeMillis: 14$
RAR8054: Exception while creating an unpooled [test] connection for pool [ MySqlTrace ], Class name is wrong or classpath is not set for : com.mysql.jdbc.jdbc2.optional.MysqlDataSource]]
[2015-12-09T09:39:58.832+0000] [glassfish 4.0] [SEVERE] [] [org.glassfish.admingui] [tid: _ThreadID=102 _ThreadName=admin-listener(13)] [timeMillis: 1449653998832] [levelValue: 1000] [[
RestResponse.getResponse() gives FAILURE. endpoint = 'https://localhost:4848/management/domain/resources/ping-connection-pool.json'; attrs = '{id=MySqlTrace}']]
So what am I doing wrong here?
EDIT1:
root#trace glassfish/lib# ls
appclient endorsed nadmin
appserv-rt.jar gf-client.jar nadmin.bat
asadmin install package-appclient.xml
client javaee.jar registration
deployment jndi-properties.jar schemas
dtds monitor
embedded mysql-connector-java-5.1.38
Sounds like your glassfish server is missing the MySQL jdbc driver. Download mysql_xxx.jar to glashfish_home/lib.
See https://dev.mysql.com/downloads/connector/j/
This blog seems to give a step by step including the jdbc driver https://computingat40s.wordpress.com/how-to-setup-a-jdbc-connection-in-glassfish/

After a long idle server throws error 'Could not open JPA EntityManager for transaction' in spring-boot-starter-data-jpa with Mysql

After a long idle server without accessing the database, error occurs.
My build script:
springBootVersion = '1.3.0.M1'
"org.springframework.boot:spring-boot-starter-thymeleaf:${springBootVersion}",
"org.springframework.boot:spring-boot-starter-web:${springBootVersion}",
"org.springframework.boot:spring-boot-starter-data-jpa:${springBootVersion}",
"org.springframework.boot:spring-boot-devtools",
"mysql:mysql-connector-java:5.1.32"
application.properties:
spring.jpa.hibernate.ddl-auto=create-drop
spring.jpa.hibernate.naming-strategy=org.hibernate.cfg.ImprovedNamingStrategy
Stack Trace:
2015-06-22 06:22:45.109 ERROR 21982 --- [nio-8082-exec-4] o.a.c.c.C.[.[.[/].[dispatcherServlet] : Servlet.service() for servlet [dispatcherServlet] in context with path [] threw exception [Request processing failed; nested exception is org.springframework.transaction.CannotCreateTransactionException: Could not open JPA EntityManager for transaction; nested exception is javax.persistence.PersistenceException: org.hibernate.TransactionException: JDBC begin transaction failed: ] with root cause
java.net.SocketException: Broken pipe
at java.net.SocketOutputStream.socketWrite0(Native Method)
at java.net.SocketOutputStream.socketWrite(SocketOutputStream.java:109)
at java.net.SocketOutputStream.write(SocketOutputStream.java:153)
at java.io.BufferedOutputStream.flushBuffer(BufferedOutputStream.java:82)
at java.io.BufferedOutputStream.flush(BufferedOutputStream.java:140)
at com.mysql.jdbc.MysqlIO.send(MysqlIO.java:3946)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2578)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2758)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2820)
at com.mysql.jdbc.ConnectionImpl.setReadOnlyInternal(ConnectionImpl.java:5510)
at com.mysql.jdbc.ConnectionImpl.setReadOnly(ConnectionImpl.java:5503)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.apache.tomcat.jdbc.pool.ProxyConnection.invoke(ProxyConnection.java:126)
at org.apache.tomcat.jdbc.pool.JdbcInterceptor.invoke(JdbcInterceptor.java:108)
at org.apache.tomcat.jdbc.pool.DisposableConnectionFacade.invoke(DisposableConnectionFacade.java:81)
at com.sun.proxy.$Proxy53.setReadOnly(Unknown Source)
at org.springframework.jdbc.datasource.DataSourceUtils.prepareConnectionForTransaction(DataSourceUtils.java:155)
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.beginTransaction(HibernateJpaDialect.java:154)
at org.springframework.orm.jpa.JpaTransactionManager.doBegin(JpaTransactionManager.java:380)
at org.springframework.transaction.support.AbstractPlatformTransactionManager.getTransaction(AbstractPlatformTransactionManager.java:373)
at org.springframework.transaction.interceptor.TransactionAspectSupport.createTransactionIfNecessary(TransactionAspectSupport.java:427)
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:276)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:136)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.data.jpa.repository.support.CrudMethodMetadataPostProcessor$CrudMethodMetadataPopulatingMethodInterceptor.invoke(CrudMethodMetadataPostProcessor.java:121)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
at com.sun.proxy.$Proxy71.findAll(Unknown Source)
at org.springframework.data.jpa.repository.JpaRepository$findAll.call(Unknown Source)
at edu.netc.service.impl.StudentServiceImpl.findAll(StudentServiceImpl.groovy:21)
at edu.netc.service.StudentService$findAll.call(Unknown Source)
at edu.netc.controllers.StudentController.getAll(StudentController.groovy:35)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:221)
at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:137)
at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:111)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandleMethod(RequestMappingHandlerAdapter.java:799)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:728)
at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)
at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:860)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:622)
at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:729)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:291)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.springframework.web.filter.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:77)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:85)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:219)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:668)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1521)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1478)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
My ApplicationClass:
#SpringBootApplication
#EnableAutoConfiguration
#ComponentScan(basePackages = "")
#EnableJpaRepositories(basePackages = "")
#EnableTransactionManagement
public class EduCenterApplication {
public static void main(String[] args) {
SpringApplication.run(EduCenterApplication.class, args);
}
}
I found a solution to this problem by specifying additional parameters, such as:
hibernate.c3p0.idle_test_period = 100
hibernate.c3p0.timeout = 200
I'm not sure that they will help me.
Please tell me what the best solution to avoid this error,
Thanks in advance!
Solution:
spring.datasource.test-on-borrow=true
spring.datasource.validation-query=SELECT 1
This is what I have used to resolve this issue.
spring.datasource.testOnBorrow: true
spring.datasource.validationQuery: SELECT 1
I had:
spring.jpa.hibernate.ddl-auto=update
And I changed to
spring.jpa.hibernate.ddl-auto=none
And voila.

Unable to establish connection pool between Tomcat7 and MySQL on Amazon EC2

I am trying to establish a connection pool between Tomcat7 and MySQL on Amazon EC2 machine. I have copied Connector/J JAR file to WEB-INF/lib folder but I am getting the following error in catalina.out
Jul 15, 2012 6:49:10 PM org.apache.naming.NamingContext lookup
WARNING: Unexpected exception resolving reference
java.sql.SQLException: com.mysql.jdbc.Driver
at org.apache.tomcat.jdbc.pool.PooledConnection.connectUsingDriver(PooledConnection.java:242)
at org.apache.tomcat.jdbc.pool.PooledConnection.connect(PooledConnection.java:175)
at org.apache.tomcat.jdbc.pool.ConnectionPool.createConnection(ConnectionPool.java:684)
at org.apache.tomcat.jdbc.pool.ConnectionPool.borrowConnection(ConnectionPool.java:616)
at org.apache.tomcat.jdbc.pool.ConnectionPool.init(ConnectionPool.java:479)
at org.apache.tomcat.jdbc.pool.ConnectionPool.<init>(ConnectionPool.java:135)
at org.apache.tomcat.jdbc.pool.DataSourceProxy.pCreatePool(DataSourceProxy.java:114)
at org.apache.tomcat.jdbc.pool.DataSourceProxy.createPool(DataSourceProxy.java:101)
at org.apache.tomcat.jdbc.pool.DataSourceFactory.createDataSource(DataSourceFactory.java:501)
at org.apache.tomcat.jdbc.pool.DataSourceFactory.getObjectInstance(DataSourceFactory.java:224)
at org.apache.naming.factory.ResourceFactory.getObjectInstance(ResourceFactory.java:143)
at javax.naming.spi.NamingManager.getObjectInstance(NamingManager.java:321)
at org.apache.naming.NamingContext.lookup(NamingContext.java:843)
at org.apache.naming.NamingContext.lookup(NamingContext.java:154)
at org.apache.naming.NamingContext.lookup(NamingContext.java:831)
at org.apache.naming.NamingContext.lookup(NamingContext.java:168)
at org.apache.catalina.core.NamingContextListener.addResource(NamingContextListener.java:1061)
at org.apache.catalina.core.NamingContextListener.createNamingContext(NamingContextListener.java:671)
at org.apache.catalina.core.NamingContextListener.lifecycleEvent(NamingContextListener.java:270)
at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:90)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5161)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:895)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:871)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:615)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:962)
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:536)
at org.apache.catalina.startup.HostConfig.check(HostConfig.java:1471)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:301)
at com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:857)
at com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:795)
at org.apache.catalina.manager.ManagerServlet.check(ManagerServlet.java:1436)
at org.apache.catalina.manager.HTMLManagerServlet.upload(HTMLManagerServlet.java:334)
at org.apache.catalina.manager.HTMLManagerServlet.doPost(HTMLManagerServlet.java:211)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:641)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.filters.CsrfPreventionFilter.doFilter(CsrfPreventionFilter.java:186)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:108)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:225)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:169)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:581)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:168)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:927)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:407)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:999)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:565)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:307)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
at java.lang.Thread.run(Thread.java:679)
Caused by: java.lang.ClassNotFoundException: com.mysql.jdbc.Driver
at java.net.URLClassLoader$1.run(URLClassLoader.java:217)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:205)
at java.lang.ClassLoader.loadClass(ClassLoader.java:321)
at java.lang.ClassLoader.loadClass(ClassLoader.java:266)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:264)
at org.apache.tomcat.jdbc.pool.PooledConnection.connectUsingDriver(PooledConnection.java:235)
... 62 more
I could not think of possible error I am doing, any pointer will be great help.
Copy Connector/J to the $CATALINA_HOME/lib. This is also told in Tomcat documentation.