Slow update Query - mysql

When i try to update my torrents table (My torrent site permits to share only open source stuff) with the following query
UPDATE `torrents` SET `leech` = '0', `seed` = '1' WHERE `id` = '26784'
It take approximaty 0.5 seconds to update a table which contains only 20,000 records . My other queries are executed in less than 0.0478s (SELECT queries)
CREATE TABLE IF NOT EXISTS `torrents` (
`id` int(11) NOT NULL,
`hash_info` varchar(255) NOT NULL,
`category_slug` varchar(255) NOT NULL,
`name` varchar(255) NOT NULL,
`size` bigint(20) NOT NULL,
`age` int(11) NOT NULL,
`description` text NOT NULL,
`trackers` longtext NOT NULL,
`magnet` longtext,
`files` longtext,
`parent_category` int(11) NOT NULL,
`category` int(11) NOT NULL,
`publish_date` int(11) DEFAULT NULL,
`uploader` int(11) NOT NULL,
`seed` int(11) DEFAULT '0',
`leech` int(11) DEFAULT '0',
`file_key` varchar(255) DEFAULT NULL,
`comments_count` int(11) DEFAULT '0'
) ENGINE=InnoDB AUTO_INCREMENT=26816 DEFAULT CHARSET=latin1;
Any solution ?

Lookups based on the indexed columns are much faster than the lookups on the non-indexed columns. This behavior can be case more visible with the growing amount of the data.
Create an index on Id column and check if it helps you improve the performance of the query.

id is declared to be an integer. So, first your comparison should be to an integer not a string:
UPDATE `torrents`
SET `leech` = '0', `seed` = '1'
WHERE `id` = 26784;
Second, you need an index on the id. You can create one by:
create index idx_torrents_id on torrents(id);
Alternatively, make it a primary key in the table.

Related

Long running Mysql Query on Indexes and sort by clause

I have a very long running MySql query. The query simply joins two tables which are very huge
bizevents - Nearly 34 Million rows
bizevents_actions - Nearly 17 million rows
Here is the query:
select
bizevent0_.id as id1_37_,
bizevent0_.json as json2_37_,
bizevent0_.account_id as account_3_37_,
bizevent0_.createdBy as createdB4_37_,
bizevent0_.createdOn as createdO5_37_,
bizevent0_.description as descript6_37_,
bizevent0_.iconCss as iconCss7_37_,
bizevent0_.modifiedBy as modified8_37_,
bizevent0_.modifiedOn as modified9_37_,
bizevent0_.name as name10_37_,
bizevent0_.version as version11_37_,
bizevent0_.fired as fired12_37_,
bizevent0_.preCreateFired as preCrea13_37_,
bizevent0_.entityRefClazz as entityR14_37_,
bizevent0_.entityRefIdAsStr as entityR15_37_,
bizevent0_.entityRefIdType as entityR16_37_,
bizevent0_.entityRefName as entityR17_37_,
bizevent0_.entityRefType as entityR18_37_,
bizevent0_.entityRefVersion as entityR19_37_
from
BizEvent bizevent0_
left outer join BizEvent_actions actions1_ on
bizevent0_.id = actions1_.BizEvent_id
where
bizevent0_.createdOn >= '1969-12-31 19:00:01.0'
and (actions1_.action <> 'SoftLock'
and actions1_.targetRefClazz = 'com.biznuvo.core.orm.domain.org.EmployeeGroup'
and actions1_.targetRefIdAsStr = '1'
or actions1_.action <> 'SoftLock'
and actions1_.objectRefClazz = 'com.biznuvo.core.orm.domain.org.EmployeeGroup'
and actions1_.objectRefIdAsStr = '1')
order by
bizevent0_.createdOn;
Below are the table definitions -- As you see i have defined the indexes well enough on these two tables on all the search columns plus the sort column. But still my queries are running for very very long time. Appreciate any more ideas either with respective indexing.
-- bizevent definition
CREATE TABLE `bizevent` (
`id` bigint(20) NOT NULL,
`json` longtext,
`account_id` int(11) DEFAULT NULL,
`createdBy` varchar(50) NOT NULL,
`createdon` datetime(3) DEFAULT NULL,
`description` varchar(255) DEFAULT NULL,
`iconCss` varchar(50) DEFAULT NULL,
`modifiedBy` varchar(50) NOT NULL,
`modifiedon` datetime(3) DEFAULT NULL,
`name` varchar(255) NOT NULL,
`version` int(11) NOT NULL,
`fired` bit(1) NOT NULL,
`preCreateFired` bit(1) NOT NULL,
`entityRefClazz` varchar(255) DEFAULT NULL,
`entityRefIdAsStr` varchar(255) DEFAULT NULL,
`entityRefIdType` varchar(25) DEFAULT NULL,
`entityRefName` varchar(255) DEFAULT NULL,
`entityRefType` varchar(50) DEFAULT NULL,
`entityRefVersion` int(11) DEFAULT NULL,
PRIMARY KEY (`id`),
KEY `IDXk9kxuuprilygwfwddr67xt1pw` (`createdon`),
KEY `IDXsf3ufmeg5t9ok7qkypppuey7y` (`entityRefIdAsStr`),
KEY `IDX5bxv4g72wxmjqshb770lvjcto` (`entityRefClazz`)
) ENGINE=InnoDB DEFAULT CHARSET=latin1;
-- bizevent_actions definition
CREATE TABLE `bizevent_actions` (
`BizEvent_id` bigint(20) NOT NULL,
`action` varchar(255) DEFAULT NULL,
`objectBizType` varchar(255) DEFAULT NULL,
`objectName` varchar(255) DEFAULT NULL,
`objectRefClazz` varchar(255) DEFAULT NULL,
`objectRefIdAsStr` varchar(255) DEFAULT NULL,
`objectRefIdType` int(11) DEFAULT NULL,
`objectRefVersion` int(11) DEFAULT NULL,
`targetBizType` varchar(255) DEFAULT NULL,
`targetName` varchar(255) DEFAULT NULL,
`targetRefClazz` varchar(255) DEFAULT NULL,
`targetRefIdAsStr` varchar(255) DEFAULT NULL,
`targetRefIdType` int(11) DEFAULT NULL,
`targetRefVersion` int(11) DEFAULT NULL,
`embedJson` longtext,
`actions_ORDER` int(11) NOT NULL,
PRIMARY KEY (`BizEvent_id`,`actions_ORDER`),
KEY `IDXa21hhagjogn3lar1bn5obl48gll` (`action`),
KEY `IDX7agsatk8u8qvtj37vhotja0ce77` (`targetRefClazz`),
KEY `IDXa7tktl678kqu3tk8mmkt1mo8lbo` (`targetRefIdAsStr`),
KEY `IDXa22eevu7m820jeb2uekkt42pqeu` (`objectRefClazz`),
KEY `IDXa33ba772tpkl9ig8ptkfhk18ig6` (`objectRefIdAsStr`),
CONSTRAINT `FKr9qjs61id11n48tdn1cdp3wot` FOREIGN KEY (`BizEvent_id`) REFERENCES `bizevent` (`id`)
) ENGINE=InnoDB DEFAULT CHARSET=latin1;>
By the way we are using Amazon RDS 5.7.33 MySql version. 16 GB RAM and 4 vCPU.
I also did a Explain Extended on the query and below is what it shows. Appreciate any help.
Initially the search of the bizevent_actions didn;t have the indexes defined. I have defined the indexes for them and tried the query but of no use.
One technique that worked for me in a similar situation was abandoning the idea of JOIN completely and switching to queries by PK. More detailed: find out which table in join would give less rows on average if you use only that table and related filter to query; get the primary keys from that table and then query the other one using WHERE pk IN ().
In your case one example would be:
SELECT
bizevent0_.id as id1_37_,
bizevent0_.json as json2_37_,
bizevent0_.account_id as account_3_37_,
...
FROM BizEvent bizevent0_
WHERE
bizevent0_.createdOn >= '1969-12-31 19:00:01.0'
AND bizevent0_.id IN (
SELECT BizEvent_id
FROM BizEvent_actions actions1_
WHERE
actions1_.action <> 'SoftLock'
and actions1_.targetRefClazz = 'com.biznuvo.core.orm.domain.org.EmployeeGroup'
and actions1_.targetRefIdAsStr = '1'
or actions1_.action <> 'SoftLock'
and actions1_.objectRefClazz = 'com.biznuvo.core.orm.domain.org.EmployeeGroup'
and actions1_.objectRefIdAsStr = '1')
ORDER BY
bizevent0_.createdOn;
This assumes that you're not actually willing to select 33+ Mio rows from BizEvent though - your code with LEFT OUTER JOIN would have done exactly this.

Extremely slow query- Using google sql cloud

Is there a way I can speed this up? Right now it's taking an unbelievably insane amount of time to query.
SELECT trades.*, trader1.user_name as trader1_name,
trader2.user_name as trader2_name FROM trades
LEFT JOIN logs_players trader1 ON trader1.user_id = trader1_account_id
LEFT JOIN logs_players trader2 ON trader2.user_id = trader2_account_id
ORDER BY time_added
LIMIT 20 OFFSET 0;
I've done as much as I could in terms of searching online for a solution. Or even just trying to get some more information why it's taking so long to execute.
The query takes about 45 seconds or so to complete.
Create statements:
CREATE TABLE `trades` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`trader1_account_id` int(11) DEFAULT NULL,
`trader2_account_id` int(11) DEFAULT NULL,
`trader1_value` bigint(20) DEFAULT NULL,
`trader2_value` bigint(20) DEFAULT NULL,
`trader1_ip` varchar(16) DEFAULT NULL,
`trader2_ip` varchar(16) DEFAULT NULL,
`world` int(11) DEFAULT NULL,
`x` int(11) DEFAULT NULL,
`z` int(11) DEFAULT NULL,
`level` int(11) DEFAULT NULL,
`trader1_user` varchar(12) DEFAULT NULL,
`trader2_user` varchar(12) DEFAULT NULL,
`time_added` timestamp NOT NULL DEFAULT CURRENT_TIMESTAMP,
PRIMARY KEY (`id`)
) ENGINE=InnoDB AUTO_INCREMENT=0 DEFAULT CHARSET=utf8
CREATE TABLE `logs_players` (
`id` int(11) NOT NULL AUTO_INCREMENT,
`user_id` int(11) DEFAULT NULL,
`user_name` varchar(20) DEFAULT NULL,
`world_stage` varchar(20) DEFAULT NULL,
`world_type` varchar(20) DEFAULT NULL,
`bank` longtext,
`inventory` longtext,
`equipment` longtext,
`total_wealth` mediumtext,
`total_play_time` mediumtext,
`rights` int(11) DEFAULT NULL,
`icon` int(11) DEFAULT NULL,
`ironmode` int(11) DEFAULT NULL,
`x` int(11) DEFAULT NULL,
`z` int(11) DEFAULT NULL,
`level` int(11) DEFAULT NULL,
`last_ip` varchar(16) DEFAULT NULL,
`last_online` timestamp NOT NULL DEFAULT CURRENT_TIMESTAMP ON UPDATE CURRENT_TIMESTAMP,
`muted_until` timestamp NULL DEFAULT NULL,
`banned_until` timestamp NULL DEFAULT NULL,
PRIMARY KEY (`id`)
) ENGINE=InnoDB AUTO_INCREMENT=0 DEFAULT CHARSET=utf8
I filled a sample database with 10k rows each, and found that a few indexes were what you needed:
ALTER TABLE `logs_players` ADD INDEX(`user_id`);
ALTER TABLE `trades` ADD INDEX(`time_added`);
The main index we need is an index on user_id. Changing that we went from a query time of 20.1390 seconds, to 0.0130 seconds:
We can even get that down further, by adding an index on time_added to make sorting a lot faster, now we ended up with an impressive query time:
Do some research on indexes! A simple EXPLAIN query would show you that you're using filesort (Which is rather bad!):
After indexes, this looks a lot better:

Large MySQL table slow to query column with unique index

I have a large MySQL table (36 million rows, 120 GB) that is unable to handle a simple query on an column with a UNIQUE KEY. Ex:
select * from items where item_id = 12345;
Is there some reason why the index isn't helping here or am I just way beyond what MySQL can handle in terms of table size? Any pointers?
Edit: My table create statement:
CREATE TABLE `items` (
`id` int(11) unsigned NOT NULL AUTO_INCREMENT,
`product_sku` int(11) DEFAULT NULL,
`item_id` varchar(19) NOT NULL DEFAULT '',
`title` tinytext NOT NULL,
`subtitle` tinytext,
`description` text,
`category_id` varchar(10) NOT NULL DEFAULT '',
`created_at` datetime NOT NULL,
`updated_at` datetime DEFAULT NULL,
PRIMARY KEY (`id`),
UNIQUE KEY `itemId` (`item_id`)
) ENGINE=InnoDB DEFAULT CHARSET=latin1;

Mysql Query is not giving good performance

I have a fairly simple query in MySQL but it is taking around 170 minutes to execute.
Can anyone help me here? I am tired of applying indexes on various keys but no benefit.
Update
H20_AUDIENCE_ADDRESS_LOG L
Join
TEMP_V_3064446579 T
Using
( ZS_AUDIENCE_ID, ZS_SOURCE_OBJECT_ID, ZS_ADDRESS_TYPE_ID )
Set
ZS_ACTIVE_PERIOD_END_DT = '2015-08-14 15:05:48',
ZS_IS_ACTIVE_PERIOD = False
Where
ZS_IS_ACTIVE_PERIOD = True
And
L.ZS_ADDRESS_ID <> T.ZS_ADDRESS_ID
And
T.ZS_SOURCE_TIMESTAMP > L.ZS_SOURCE_TIMESTAMP;
Creates:
CREATE TABLE `H20_AUDIENCE_ADDRESS_LOG` (
`ZS_AUDIENCE_ADDRESS_LOG_ID` bigint(20) unsigned NOT NULL AUTO_INCREMENT,
`ZS_AUDIENCE_ID` bigint(20) unsigned NOT NULL,
`ZS_SOURCE_OBJECT_ID` int(10) unsigned NOT NULL,
`ZS_INSERT_DT` datetime NOT NULL,
`ZS_ADDRESS_TYPE_ID` tinyint(3) unsigned NOT NULL,
`ZS_ADDRESS_ID` bigint(20) unsigned NOT NULL,
`ZS_SOURCE_TIMESTAMP` datetime NOT NULL,
`ZS_ACTIVE_PERIOD_START_DT` datetime DEFAULT NULL,
`ZS_ACTIVE_PERIOD_END_DT` datetime DEFAULT NULL,
`ZS_IS_ACTIVE_PERIOD` bit(1) DEFAULT NULL,
`ZS_ACTIVE_PRIORITY_PERIOD_START_DT` datetime DEFAULT NULL,
`ZS_ACTIVE_PRIORITY_PERIOD_END_DT` datetime DEFAULT NULL,
`ZS_IS_ACTIVE_PRIORITY_PERIOD` bit(1) DEFAULT NULL,
PRIMARY KEY (`ZS_AUDIENCE_ADDRESS_LOG_ID`),
KEY `IX_H20_AUDIENCE_ADDRESS_LOG` (`ZS_AUDIENCE_ID`,`ZS_SOURCE_OBJECT_ID`,`ZS_ADDRESS_TYPE_ID`,`ZS_ADDRESS_ID`),
KEY `IX_ADDRESS_ID` (`ZS_ADDRESS_ID`,`ZS_IS_ACTIVE_PERIOD`)
) ENGINE=InnoDB AUTO_INCREMENT=22920801 DEFAULT CHARSET=utf8;
CREATE TABLE `TEMP_V_3064446579` (
`ZS_AUDIENCE_ID` bigint(20) unsigned NOT NULL,
`ZS_SOURCE_OBJECT_ID` int(10) unsigned NOT NULL,
`ZS_ADDRESS_TYPE_ID` tinyint(3) unsigned NOT NULL,
`ZS_ADDRESS_ID` bigint(20) unsigned NOT NULL,
`ZS_SOURCE_TIMESTAMP` datetime NOT NULL,
UNIQUE KEY `IX_TEMP_V_3064446579` (`ZS_AUDIENCE_ID`,`ZS_SOURCE_OBJECT_ID`,`ZS_ADDRESS_TYPE_ID`,`ZS_ADDRESS_ID`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8;
Both tables circa 3m records
Something like this should work:
UPDATE
`H20_AUDIENCE_ADDRESS_LOG` `L`
SET
`ZS_ACTIVE_PERIOD_END_DT` = '2015-08-14 15:05:48',
`ZS_IS_ACTIVE_PERIOD` = False
WHERE
`ZS_IS_ACTIVE_PERIOD` = True AND
EXISTS (
SELECT
1
FROM
`TEMP_V_3064446579` `T`
WHERE
`L`.`ZS_ADDRESS_ID` <> `T`.`ZS_ADDRESS_ID` AND
`T`.`ZS_SOURCE_TIMESTAMP` > `L`.`ZS_SOURCE_TIMESTAMP`
LIMIT 1
);
(The ZS_ makes the SQL hard to read; suggest removing it.)
In TEMP_V_3064446579, change UNIQUE to PRIMARY.
Change
KEY `IX_H20_AUDIENCE_ADDRESS_LOG` (`ZS_AUDIENCE_ID`,`ZS_SOURCE_OBJECT_ID`,
`ZS_ADDRESS_TYPE_ID`,`ZS_ADDRESS_ID`)
to
KEY `IX_H20_AUDIENCE_ADDRESS_LOG` (`ZS_AUDIENCE_ID`,`ZS_SOURCE_OBJECT_ID`,
`ZS_ADDRESS_TYPE_ID`,`ZS_ADDRESS_ID`,
`ZS_SOURCE_TIMESTAMP`)
If you have a new enough version, please provide EXPLAIN UPDATE .... If not, please provide EXPLAIN SELECT ... where the SELECT is derived from the UPDATE, but without the SET.

Data Structure causing impossible joins

Tables:
nodes
data_texts
data_profiles
data_locations
data_profiles
data_media
data_products
data_metas
categories
tags
categories_nodes
tags_nodes
This question is a generalized question and is on the back of another question
Explanation:
Each of the "data" tables has a node_id that refers back to the id of the nodes table (hasMany/belongsTo association).
A "Node" can be anything - a TV Show, a Movie, a Person, an Article...etc (all generated via a CMS, so the user can control what type of "Nodes" they want).
When pulling data, I want to be able to query against certain fields. For example if they do a search, I want to be able to pull nodes that have data_texts.title = '%george%' or order by the datetime field in data_locations.
The problem is, when I do a join on all seven data tables (or more), the query has to hit so many combined rows that it just times out (even with a nearly empty database.... total 200 rows across the entire database).
I realize I can determine IF I need a join depending on what I'm doing - but even with five or six joins (once the database gets to 10k+ records), it's going to be horribly slow, if it works at all. Per this question, the query I'm using just doing a join on these tables times out completely.
Each node can have multiple rows of each data type (for multi-language reasons among others).
I'm completely defeated - I'm at the point where I think I need to restructure the entire thing, but don't have the time for that. I've thought about combining all into one table, but aren't sure how....etc
nodes
CREATE TABLE `nodes` (
`id` CHAR(36) NOT NULL,
`name` VARCHAR(100) NOT NULL,
`slug` VARCHAR(100) NOT NULL,
`node_type_id` CHAR(36) NOT NULL,
`site_id` CHAR(36) NOT NULL,
`created` DATETIME NOT NULL,
`modified` DATETIME NOT NULL,
PRIMARY KEY (`id`),
INDEX `nodeTypeId` (`node_type_id`),
INDEX `slug` (`slug`),
INDEX `nodeId` (`id`)
)
COLLATE='latin1_swedish_ci'
ENGINE=MyISAM;
data_texts:
CREATE TABLE `data_texts` (
`id` CHAR(36) NOT NULL,
`title` VARCHAR(250) NULL DEFAULT NULL,
`subtitle` VARCHAR(500) NULL DEFAULT NULL,
`content` LONGTEXT NULL,
`byline` VARCHAR(250) NULL DEFAULT NULL,
`language_id` CHAR(36) NULL DEFAULT NULL,
`foreign_key` CHAR(36) NULL DEFAULT NULL,
`model` VARCHAR(40) NULL DEFAULT NULL,
`node_id` CHAR(36) NULL DEFAULT NULL,
`created` DATETIME NOT NULL,
`modified` DATETIME NOT NULL,
PRIMARY KEY (`id`),
INDEX `nodeId` (`node_id`),
INDEX `languageId_nodeId` (`language_id`, `node_id`),
INDEX `foreignKey_model` (`foreign_key`, `model`)
)
COLLATE='utf8_general_ci'
ENGINE=MyISAM;
data_profiles
CREATE TABLE `data_profiles` (
`id` CHAR(36) NOT NULL,
`name` VARCHAR(80) NULL DEFAULT NULL,
`email_personal` VARCHAR(100) NULL DEFAULT NULL,
`email_business` VARCHAR(100) NULL DEFAULT NULL,
`email_other` VARCHAR(100) NULL DEFAULT NULL,
`title` VARCHAR(100) NULL DEFAULT NULL,
`description` LONGTEXT NULL,
`prefix` VARCHAR(40) NULL DEFAULT NULL,
`phone_home` VARCHAR(40) NULL DEFAULT NULL,
`phone_business` VARCHAR(40) NULL DEFAULT NULL,
`phone_mobile` VARCHAR(40) NULL DEFAULT NULL,
`phone_other` VARCHAR(40) NULL DEFAULT NULL,
`foreign_key` CHAR(36) NULL DEFAULT NULL,
`model` VARCHAR(40) NULL DEFAULT NULL,
`node_id` CHAR(36) NULL DEFAULT NULL,
`language_id` CHAR(36) NULL DEFAULT NULL,
`created` DATETIME NOT NULL,
`modified` DATETIME NOT NULL,
`user_id` CHAR(36) NULL DEFAULT NULL,
PRIMARY KEY (`id`),
INDEX `nodeId` (`node_id`),
INDEX `languageId_nodeId` (`node_id`, `language_id`),
INDEX `foreignKey_model` (`foreign_key`, `model`)
)
COLLATE='latin1_swedish_ci'
ENGINE=MyISAM;
categories
CREATE TABLE `categories` (
`id` CHAR(36) NOT NULL,
`name` VARCHAR(100) NOT NULL,
`node_type_id` CHAR(36) NOT NULL,
`site_id` CHAR(36) NOT NULL,
`slug` VARCHAR(100) NOT NULL,
`created` DATETIME NOT NULL,
`modified` DATETIME NOT NULL,
PRIMARY KEY (`id`),
INDEX `nodeTypeId` (`node_type_id`),
INDEX `slug` (`slug`)
)
COMMENT='Used to categorize nodes'
COLLATE='utf8_general_ci'
ENGINE=MyISAM;
categories_nodes
CREATE TABLE `categories_nodes` (
`id` CHAR(36) NOT NULL,
`category_id` CHAR(36) NOT NULL,
`node_id` CHAR(36) NOT NULL,
PRIMARY KEY (`id`),
INDEX `categoryId_nodeId` (`category_id`, `node_id`)
)
COLLATE='utf8_general_ci'
ENGINE=MyISAM;
node_tags
CREATE TABLE `node_tags` (
`id` CHAR(36) NOT NULL,
`name` VARCHAR(40) NOT NULL,
`site_id` CHAR(36) NOT NULL,
`created` DATETIME NOT NULL,
`modified` DATETIME NOT NULL,
PRIMARY KEY (`id`),
INDEX `siteId` (`site_id`)
)
COLLATE='utf8_general_ci'
ENGINE=MyISAM;
nodes_node_tags
CREATE TABLE `nodes_node_tags` (
`id` CHAR(36) NOT NULL,
`node_id` CHAR(36) NOT NULL,
`node_tag_id` CHAR(36) NOT NULL,
PRIMARY KEY (`id`),
INDEX `node_id_node_tag_id` (`node_id`, `node_tag_id`)
)
COLLATE='utf8_general_ci'
ENGINE=MyISAM;
MySQL:
SELECT `Node`.`id`, `Node`.`name`, `Node`.`slug`, `Node`.`node_type_id`, `Node`.`site_id`, `Node`.`created`, `Node`.`modified`
FROM `mysite`.`nodes` AS `Node`
LEFT JOIN `mysite`.`data_date_times` AS `DataDateTime` ON (`DataDateTime`.`node_id` = `Node`.`id`)
LEFT JOIN `mysite`.`data_locations` AS `DataLocation` ON (`DataLocation`.`node_id` = `Node`.`id`)
LEFT JOIN `mysite`.`data_media` AS `DataMedia` ON (`DataMedia`.`node_id` = `Node`.`id`)
LEFT JOIN `mysite`.`data_metas` AS `DataMeta` ON (`DataMeta`.`node_id` = `Node`.`id`)
LEFT JOIN `mysite`.`data_profiles` AS `DataProfile` ON (`DataProfile`.`node_id` = `Node`.`id`)
LEFT JOIN `mysite`.`data_products` AS `DataProduct` ON (`DataProduct`.`node_id` = `Node`.`id`)
LEFT JOIN `mysite`.`data_texts` AS `DataText` ON (`DataText`.`node_id` = `Node`.`id`)
WHERE 1=1
GROUP BY `Node`.`id`
Firstly, try InnoDB, not MyISAM.
Secondly, remove the group by, see how well it runs then, and how many rows are involved. Shouldn't be that many, but it's interesting.
You don't need the 'nodeId' index on node (as you already have it as a primary key). Again, shouldn't make any difference.
The where clause is irrelevant. You can remove it with no effect one way or another.
Thirdly, well, something is seriously broken.
Have a quick look on how to start profiling (e.g. http://dev.mysql.com/doc/refman/5.0/en/show-profile.html) , and run a profile command to see where all the time is going. Post it here if it doesn't immediately show that something is broken.
I'm unfortunately not in a position where I can do any tests right now. I'll just throw out some ideas. I might be able to do some tests later.
Be suspicious of different collations.
Some of your ids are useless. For example, you should drop the column categories_nodes.id, and put a primary key constraint on {category_id, node_id} instead.
Be suspicious of any design that requires joining all the tables at run time. There are better ways.
Use innodb and foreign key constraints.