I've installed caffe on a server a while ago, and back then it worked properly.
Now I'm following the LeNet MNIST tutorial again (http://caffe.berkeleyvision.org/gathered/examples/mnist.html), and running
./examples/mnist/create_mnist.sh
returns
build/examples/mnist/convert_mnist_data.bin: error while loading shared libraries: libglog.so.0: cannot open shared object file: No such file or directory
I've noticed that liibglog.so.0 is not in /lib which might be the reason for it, but I'm not allowed to copy that file into /lib directory, since I'm not a root user.
Is there workaround for this?
The easiest way to work around the lack of shared libraries in system directories is to use LD_LIBRARY_PATH with the directory where the shared library lives.
Before running the the command that requires a library, run the following in the following the same shell.
export LD_LIBRARY_PATH=~/local/lib
You can also stick this in your .bashrc for convenience.
An alternate solution is to use the following command line flag while compiling, but that requires mucking with other people's build scripts.
-Wl,-rpath,$(DEFAULT_LIB_INSTALL_PATH)
Related
I have one quick and very basic question about compiling modules in Cython: I have compiled a couple of modules using distutils and the command "build_ext --inplace". When I make a change to one of these modules, repeating "build_ext --inplace" leads to an error:
fatal error LNK1104: cannot open file 'C:\Users...\PycharmProjects...pyd'
When I close PyCharm and restart it, everything works fine - it seems like the current files cannot be deleted because they're still in use unless I restart everything. Thus, I was wondering if there is a way to avoid the restart and losing all the objects in memory?
Best,
T
I'm new to servers and programming in general, and I have a question regarding remote acces to a server, and how much I can actually do on it.
The thin is I have a working program on a linux server, which I acces with my windows machine using mobaxterm. I can acces the server, I see folders and a cmd line, where I can compile a makefile. Everything runs well, however when I run the makefile it just compiles, and doesn't do anything. No error messages, but also no opening of a program. I don't understand anything. Is it a delimitation of the servers structure, that it can only store files on it?
When you compile under linux using a make, it produces an executable but does not run it. Make builds executable objects, but it does not run them. You should include your makefile in the question (reduced to a minimum if it is large). Inside it, you will see that it generates a executable file with a specific name. To run it, you need to invoke this from the command line.
To find out what it is building, a quick way is to type "make clean" (press enter of course) to clean up any built objects. Then type the "ls" command to see what is in your directory.
Next, build the program with the "make" command, then type "ls" to see what has been added. Ignore any new files that end in .o or .a or .so and look for any new files. These are the files built by make and at least one of them is the program you built.
Assuming you found a new file called "myprogram". To run it, type:
./myprogram
I am trying to install RMySQL on my mac (mavericks) and it errors out when I try to build it from source, saying:
Configuration error: could not find the MySQL installation include
and/or library directories. Manually specify the location of the
MySQL libraries and the header files and re-run R CMD INSTALL.
INSTRUCTIONS:
Define and export the 2 shell variables PKG_CPPFLAGS and PKG_LIBS to include the directory for header files (*.h) and
libraries, for example (using Bourne shell syntax):
export PKG_CPPFLAGS="-I"
export PKG_LIBS="-L -lmysqlclient"
Re-run the R INSTALL command:
R CMD INSTALL RMySQL_.tar.gz
I tried to follow the instructions by entering:
export PKG_CPPFLAGS="-I/usr/local/mysql/include" export
PKG_LIBS="-L/usr/local/mysql/lib -lmysqlclient"
but when I re-run RMySQL it still doesn't work. Moreover, if I type
$PKG_LIBS
to see what that variable holds, I get
-bash: -L/usr/local/mysql/lib: No such file or directory'
I know that /usr/local/mysql/lib exists and it does contain a mySQL header. Am I misunderstanding the instructions?
I'm asking here only after a lot of effort to find solutions and/or work arounds. Sucks being a noob sometimes.
I am going to assume you're trying to get RmySQL to run on R 3.1.0 on Mavericks? Rather than worry about exporting variables etc, here is a simple clean solution for you that should avoid the headaches.
The RMySQL install link Pascal provided above really is your solution. You're probably just stumbling on syntax, or getting things to work from the terminal.
Even if you're a "noob", you should be able to get this working. I'll try to offer a "dummy's guide" walk through here, as I bet there are many others who have this problem too, even after trying to read the RMySQL installation readme.
I would bet with very high confidence the problem is just that you aren't specifying correctly the locations of the library and header folders for compiling. Read the errors carefully when you try to compile... the errors will probably tell you a file/header is missing, or some .so file (shared object) is missing.
One simple way compile RMySQL from source on R 3.1.0, mavericks is as follows (this does not require you to set any environmental variables, no editing of the Renviron file, etc):
Does MySQL work by itself? i.e. Can you open/run it no problems? If not, fix that first.
Find the precise location of your mysql installation. For me, on Mavericks, I see mysql installed at /usr/local/mysql-5.6.17-osx10.7-x86_64 (your version number may be different). There is also another folder /usr/local/mysql which is an alias to /usr/local/mysql-5.6.17-osx10.7-x86_64 (/usr/local/mysql finds the current version of mysql you are using, if multiple mysql file folders exist, I think). In this directory, I see two sub directories (among many) called "include" and "lib". Take a look; "include" will contain header files (include as in #include , etc, in simple C++ programs). The "lib" folder contains compiled source code of the mysql library.
An easy way to compile and install RMySQL which doesn't exactly follow the suggested way to do it in the installation guide is this. Note that this is doing the same thing as in the installation guide, just a little easier as it's one command line from the terminal, once you know where your mysql install folder is. Go to the terminal, and type the following exactly, with one space between each chunk (with your mysql folder name adjusted appropriately for the version number):
PKG_CPPFLAGS="-I/usr/local/mysql/include/" PKG_LIBS="-L/usr/local/mysql/lib/ -lmysqlclient" R CMD INSTALL RMySQL_0.9-3.tar.gz
OR (the same thing, just more typing)
PKG_CPPFLAGS="-I/usr/local/mysql-5.6.17-osx10.7-x86_64/include/" PKG_LIBS="-L/usr/local/mysql-5.6.17-osx10.7-x86_64/lib/ -lmysqlclient" R CMD INSTALL RMySQL_0.9-3.tar.gz
Note for dummies: Make sure when you run this command, that you are doing it from the terminal in the directory that contains the RMySQL_0.9-3.tar.gz file (or whatever the name of your folder is that contains the RMySQL source code)
and RMySQL compiles!
Don't be afraid about trying to compile source code -- it's not just for 'compiled language programmers' or 'computer science graduates'. Most of the time when compiling fails it's just because files are "missing" (there is no corruption on the source code) -- the user hasn't properly specified the locations of the header and libraries (shared objects). Now pull your big boy/girl panties up and just do it .... it's easy.
Notes for people clueless about compiling source code for packages in R:
a) pay special attention to the spacing in the above, otherwise it may not work. Do not have any spaces between the = and the variable/file names (e.g. don't try and have in the above PKG_CPPFLAGS ="-I/usr/local/mysql/include/" as it won't work)
b) When compiling, you want to specify the locations of the header files and the library files and this is what the "-I/ .... " and "-L/ ...." are doing. The -I directory specifies the location of the header files, and the -L the location of the library files. The library files also require the -l[name of library] extension (the -l is short for -lib in the library object names).
c) Note that in the directory /usr/local/mysql-5.6.17-osx10.7-x86_64/lib/ I do not see a file called "lmysqlclient", or even "libmysqlclient", but I do see files named (among others) "libmysqlclient.a" and "libmysqlclient.18.dylib". So don't worry about your MySQL installation not being correct if you don't see a file just called "libmysqlclient" in the lib folder.
I'm using starkit/starpack with tcl8.5 and expect 5.44.1.15 under linux, after creating the starkit and putting the directory for expect under lib directory of the created vfs directory and wrap it back to starkit file, I could create the starpack file, after checking that everything's working fine on my linux system, I use this standalone file on another linux system but there, it doesn't work and I have this error :
couldn't load file "/tmp/tclJ4M144": /lib/libc.so.6: version `GLIBC_2.7' not found (required by /tmp/tclJ4M144)
so trying to solve this, I've removed expect 5.44.1.15 directory from vfs directory and replaced it with expect 5.43 taken from the target linux system (where my standalone starpack file didn't work), I've also adapted its pkgIndex file before recreating the starkit and then the starpack, but this time I have this error :
segmentation fault
Anyone can help me on this ? What do I need to do to make it work on the target linux system ?
Thank you.
I am trying to read and write into app.config file of user-settings. I found a snippet of a code for working with confige file. I finally got it compiling and running, but it absolutely seems to be doing nothing to the App.config file.
Here is the code:
Method MainForm1.Button1.Click(sender: System.Object; e: System.EventArgs);
var
config : System.Configuration.Configuration;
begin
config:=ConfigurationManager.OpenExeConfiguration(ConfigurationUserLevel.None);
config.AppSettings.Settings.Add('PreferenceToRemember','value1');
config.Save(ConfigurationSaveMode.Modified);
ConfigurationManager.RefreshSection('appSettings');
end;
It is compiling without any errors, but I don't know if it is doing anything.
Is there anything wrong with the code? I need to be able to write/read a section and write/read a key/value. Thanks in advance.
UPDATE: Instead of using ConfigurationManager, I simply use Properties.Settings.Default. However, I am having bit of a problem writing into it and reading back from it, although program complies with without any errors and the code seems simple.
How do you read and write to Properties.Settings.Default from within your code?
Maybe you're looking at the wrong file?
The app.config you have in your solution will be copied to YourProgramFile.exe.config in the bin/Debug or bin/Release folder. When running your program it will update this file, not the app.config file in your solution.
Then perhaps you also should check write permissions on your application folder. Normally (Win Vista, Win 7) the User executing an application does not have write permissions in the Program Files folder where your application should reside, so updating the .config will most probably fail due to the lack of write permissions. This is even more true for Linux/Unix systems.
You should try to separate the elements you need to write and write an additional config file in a user-specific folder. You can take the defaults from the normal application config for that initially and just update the user-specific config file, this way you are not hindered by file permissions and every user can update their settings specifically.